def test_gwas_from_data(self):
gwas = GWASUtilities.gwas_from_data(SampleData.sample_gwas_data_1())
assert_gwas_1(self, gwas)
gwas = GWASUtilities.gwas_from_data(SampleData.sample_gwas_data_2())
assert_gwas_2(self, gwas)
gwas = GWASUtilities.gwas_from_data(SampleData.sample_gwas_data_1_e(), extra_columns=[("number",6), ("character",7)])
assert_gwas_1_e(self, gwas)
def test_gwas_from_data(self):
gwas = GWASUtilities.gwas_from_data(SampleData.sample_gwas_data_1())
assert_gwas_1(self, gwas)
gwas = GWASUtilities.gwas_from_data(SampleData.sample_gwas_data_2())
assert_gwas_2(self, gwas)
gwas = GWASUtilities.gwas_from_data(SampleData.sample_gwas_data_1_e(),
extra_columns=[("number", 6),
("character", 7)])
assert_gwas_1_e(self, gwas)
def test_extract(self):
gwas = GWASUtilities.gwas_from_data(SampleData.sample_gwas_data_3())
g = GWAS.extract(gwas, ["rs3", "rs6", "rs7"])
assert_gwas_extracted_from_data_3(self, g)
def test_extract(self):
gwas = GWASUtilities.gwas_from_data(SampleData.sample_gwas_data_3())
g = GWAS.extract(gwas, ["rs3", "rs6", "rs7"])
assert_gwas_extracted_from_data_3(self, g)
