def test_macaque_alleles():
allele_name = "Mamu-B*082:02"
eq_(normalize_allele_name(allele_name), "Mamu-B*82:02")
eq_(compact_allele_name(allele_name), "B8202")
# expect 3rd zero in the family "007" to be trimmed in the normalized form
# of this allele
allele_name = "Mamu-B*007:02"
eq_(normalize_allele_name(allele_name), "Mamu-B*07:02")
eq_(compact_allele_name(allele_name), "B0702")
def test_mouse_class1_alleles_H2_Db():
# H2-Db
eq_(parse_allele_name("H2-Db"),
AlleleName("H-2", "D", "", "b"))
eq_(normalize_allele_name("H2-Db"), "H-2-Db")
eq_(compact_allele_name("H2-Db"), "Db")
# with hyphen in "H-2"
eq_(parse_allele_name("H-2-Db"),
AlleleName("H-2", "D", "", "b"))
eq_(normalize_allele_name("H-2-Db"), "H-2-Db")
eq_(compact_allele_name("H-2-Db"), "Db")
def test_mouse_class1_alleles_H2_Kk():
# H2-Kk
eq_(parse_allele_name("H2-Kk"),
AlleleName("H-2", "K", "", "k"))
eq_(normalize_allele_name("H2-Kk"), "H-2-Kk")
eq_(compact_allele_name("H-2-Kk"), "Kk")
# with a hyphen in "H-2"
eq_(parse_allele_name("H-2-Kk"),
AlleleName("H-2", "K", "", "k"))
eq_(normalize_allele_name("H-2-Kk"), "H-2-Kk")
eq_(compact_allele_name("H-2-Kk"), "Kk")
def test_mouse_class2_alleles():
# H2-IAb
eq_(parse_allele_name("H2-IAb"),
AlleleName("H-2", "IA", "", "b"))
eq_(normalize_allele_name("H2-IAb"), "H-2-IAb")
eq_(compact_allele_name("H2-IAb"), "IAb")
# with hyphen in "H-2"
eq_(parse_allele_name("H-2-IAb"),
AlleleName("H-2", "IA", "", "b"))
eq_(normalize_allele_name("H-2-IAb"), "H-2-IAb")
eq_(compact_allele_name("H-2-IAb"), "IAb")
def test_human_class2_alpha_beta():
expected = "HLA-DPA1*01:05-DPB1*100:01"
expected_compact = "DPA10105-DPB110001"
for name in ["DPA10105-DPB110001",
"HLA-DPA1*01:05-DPB1*100:01",
"hla-dpa1*0105-dpb1*10001",
"dpa1*0105-dpb1*10001",
"HLA-DPA1*01:05/DPB1*100:01"]:
eq_(normalize_allele_name(name), expected)
eq_(compact_allele_name(name), expected_compact)
def test_human_class2():
expected = "HLA-DRB1*01:02"
expected_compact = "DRB10102"
for name in ["DRB1_0102",
"DRB101:02",
"HLA-DRB1_0102",
"DRB10102",
"DRB1*0102",
"HLA-DRB1*0102",
"HLA-DRB1*01:02"]:
eq_(normalize_allele_name(name), expected)
eq_(compact_allele_name(name), expected_compact)
def test_hla_short_names():
expected = "A0201"
for name in hla_02_01_names:
result = compact_allele_name(name)
eq_(result, expected)