예제 #1
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def test_macaque_alleles():
    allele_name = "Mamu-B*082:02"
    eq_(normalize_allele_name(allele_name), "Mamu-B*82:02")
    eq_(compact_allele_name(allele_name), "B8202")

    # expect 3rd zero in the family "007" to be trimmed in the normalized form
    # of this allele
    allele_name = "Mamu-B*007:02"
    eq_(normalize_allele_name(allele_name), "Mamu-B*07:02")
    eq_(compact_allele_name(allele_name), "B0702")
예제 #2
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def test_mouse_class1_alleles_H2_Db():
    # H2-Db
    eq_(parse_allele_name("H2-Db"),
        AlleleName("H-2", "D", "", "b"))
    eq_(normalize_allele_name("H2-Db"), "H-2-Db")
    eq_(compact_allele_name("H2-Db"), "Db")

    # with hyphen in "H-2"
    eq_(parse_allele_name("H-2-Db"),
        AlleleName("H-2", "D", "", "b"))
    eq_(normalize_allele_name("H-2-Db"), "H-2-Db")
    eq_(compact_allele_name("H-2-Db"), "Db")
예제 #3
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def test_mouse_class1_alleles_H2_Kk():
    # H2-Kk
    eq_(parse_allele_name("H2-Kk"),
        AlleleName("H-2", "K", "", "k"))
    eq_(normalize_allele_name("H2-Kk"), "H-2-Kk")
    eq_(compact_allele_name("H-2-Kk"), "Kk")

    # with a hyphen in "H-2"
    eq_(parse_allele_name("H-2-Kk"),
        AlleleName("H-2", "K", "", "k"))
    eq_(normalize_allele_name("H-2-Kk"), "H-2-Kk")
    eq_(compact_allele_name("H-2-Kk"), "Kk")
예제 #4
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def test_mouse_class2_alleles():
    # H2-IAb
    eq_(parse_allele_name("H2-IAb"),
        AlleleName("H-2", "IA", "", "b"))
    eq_(normalize_allele_name("H2-IAb"), "H-2-IAb")
    eq_(compact_allele_name("H2-IAb"), "IAb")

    # with hyphen in "H-2"
    eq_(parse_allele_name("H-2-IAb"),
        AlleleName("H-2", "IA", "", "b"))
    eq_(normalize_allele_name("H-2-IAb"), "H-2-IAb")
    eq_(compact_allele_name("H-2-IAb"), "IAb")
예제 #5
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def test_human_class2_alpha_beta():
    expected = "HLA-DPA1*01:05-DPB1*100:01"
    expected_compact = "DPA10105-DPB110001"
    for name in ["DPA10105-DPB110001",
                 "HLA-DPA1*01:05-DPB1*100:01",
                 "hla-dpa1*0105-dpb1*10001",
                 "dpa1*0105-dpb1*10001",
                 "HLA-DPA1*01:05/DPB1*100:01"]:
        eq_(normalize_allele_name(name), expected)
        eq_(compact_allele_name(name), expected_compact)
예제 #6
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def test_human_class2():
    expected = "HLA-DRB1*01:02"
    expected_compact = "DRB10102"
    for name in ["DRB1_0102",
                 "DRB101:02",
                 "HLA-DRB1_0102",
                 "DRB10102",
                 "DRB1*0102",
                 "HLA-DRB1*0102",
                 "HLA-DRB1*01:02"]:
        eq_(normalize_allele_name(name), expected)
        eq_(compact_allele_name(name), expected_compact)
예제 #7
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def test_hla_short_names():
    expected = "A0201"
    for name in hla_02_01_names:
        result = compact_allele_name(name)
        eq_(result, expected)