def create_parser():
parser = argparse.ArgumentParser(description='Interactive time-series viewer',
formatter_class=argparse.RawTextHelpFormatter,
epilog=EXAMPLE)
parser.add_argument('file', nargs='+',
help='time-series file to display\n'
'i.e.: timeseries_ERA5_ramp_demErr.h5 (MintPy)\n'
' LS-PARAMS.h5 (GIAnT)\n'
' S1_IW12_128_0593_0597_20141213_20180619.he5 (HDF-EOS5)')
parser.add_argument('--label', dest='file_label', nargs='*', help='labels to display for multiple input files')
parser.add_argument('--ylim', dest='ylim', nargs=2, metavar=('YMIN', 'YMAX'), type=float, help='Y limits for point plotting.')
parser.add_argument('--tick-right', dest='tick_right', action='store_true', help='set tick and tick label to the right')
parser.add_argument('-l','--lookup', dest='lookup_file', type=str, help='lookup table file')
parser.add_argument('-n', dest='idx', metavar='NUM', type=int, help='Epoch/slice number for initial display.')
parser.add_argument('--error', dest='error_file', help='txt file with error for each date.')
# time info
parser.add_argument('--start-date', dest='start_date', type=str, help='start date of displacement to display')
parser.add_argument('--end-date', dest='end_date', type=str, help='end date of displacement to display')
parser.add_argument('--exclude', '--ex', dest='ex_date_list', nargs='*', default=['exclude_date.txt'], help='Exclude date shown as gray.')
parser.add_argument('--zf', '--zero-first', dest='zero_first', action='store_true', help='Set displacement at first acquisition to zero.')
parser.add_argument('--off','--offset', dest='offset', type=float, help='Offset for each timeseries file.')
parser.add_argument('--noverbose', dest='print_msg', action='store_false', help='Disable the verbose message printing.')
# temporal model fitting
parser.add_argument('--nomodel', '--nofit', dest='plot_model', action='store_false',
help='Do not plot the prediction of the time function (deformation model) fitting.')
parser.add_argument('--plot-model-conf-int', '--plot-fit-conf-int', dest='plot_model_conf_int', action='store_true',
help='Plot the time function prediction confidence intervals.\n'
'[!-- Preliminary feature alert! --!]\n'
'[!-- This feature is NOT throughly checked. Read the code before use. Interpret at your own risk! --!]')
parser = arg_group.add_timefunc_argument(parser)
# pixel of interest
pixel = parser.add_argument_group('Pixel Input')
pixel.add_argument('--yx', type=int, metavar=('Y', 'X'), nargs=2, help='initial pixel to plot in Y/X coord')
pixel.add_argument('--lalo', type=float, metavar=('LAT', 'LON'), nargs=2, help='initial pixel to plot in lat/lon coord')
pixel.add_argument('--marker', type=str, default='o', help='marker style (default: %(default)s).')
pixel.add_argument('--ms', '--markersize', dest='marker_size', type=float, default=6.0, help='marker size (default: %(default)s).')
pixel.add_argument('--lw', '--linewidth', dest='linewidth', type=float, default=0, help='line width (default: %(default)s).')
pixel.add_argument('--ew', '--edgewidth', dest='edge_width', type=float, default=1.0, help='Edge width for the error bar (default: %(default)s)')
# other groups
parser = arg_group.add_data_disp_argument(parser)
parser = arg_group.add_dem_argument(parser)
parser = arg_group.add_figure_argument(parser)
parser = arg_group.add_gps_argument(parser)
parser = arg_group.add_mask_argument(parser)
parser = arg_group.add_map_argument(parser)
parser = arg_group.add_memory_argument(parser)
parser = arg_group.add_reference_argument(parser)
parser = arg_group.add_save_argument(parser)
parser = arg_group.add_subset_argument(parser)
return parser
def create_parser():
parser = argparse.ArgumentParser(description='Estimate velocity / time functions from time-series.',
formatter_class=argparse.RawTextHelpFormatter,
epilog=TEMPLATE+'\n'+REFERENCE+'\n'+EXAMPLE)
parser.add_argument('timeseries_file',
help='Time series file for velocity inversion.')
parser.add_argument('--template', '-t', dest='template_file', help='template file with options')
parser.add_argument('-o', '--output', dest='outfile', help='output file name')
parser.add_argument('--update', dest='update_mode', action='store_true',
help='Enable update mode, and skip estimation if:\n'+
'1) output velocity file already exists, readable '+
'and newer than input file\n' +
'2) all configuration parameters are the same.')
parser.add_argument('--ts-std-file', dest='ts_std_file',
help='Time-series STD file for velocity STD calculation.')
# reference in time and space
# for input file without reference info, e.g. ERA5.h5
parser.add_argument('--ref-yx', dest='ref_yx', metavar=('Y', 'X'), type=int, nargs=2,
help='Change referene point Y X for estimation.')
parser.add_argument('--ref-date', dest='ref_date', metavar='DATE',
help='Change reference date for estimation.')
# dates of interest
date = parser.add_argument_group('dates of interest')
date.add_argument('--start-date','-s', dest='startDate',
help='start date for velocity estimation')
date.add_argument('--end-date','-e', dest='endDate',
help='end date for velocity estimation')
date.add_argument('--exclude', '--ex', dest='excludeDate', nargs='+', default=[],
help='date(s) not included in velocity estimation, i.e.:\n' +
'--exclude 20040502 20060708 20090103\n' +
'--exclude exclude_date.txt\n'+DROP_DATE_TXT)
# bootstrap
bootstrap = parser.add_argument_group('bootstrapping', 'estimating the mean / STD of the velocity estimator')
bootstrap.add_argument('--bootstrap', '--bootstrapping', dest='bootstrap', action='store_true',
help='Enable bootstrapping to estimate the mean and STD of the velocity estimator.')
bootstrap.add_argument('--bc', '--bootstrap-count', dest='bootstrapCount', type=int, default=400,
help='number of iterations for bootstrapping (default: %(default)s).')
# time functions
parser = arg_group.add_timefunc_argument(parser)
# computing
parser = arg_group.add_memory_argument(parser)
return parser