def test_construct_feature_dataframe_no_context(self):
objective_function_config = objective_function_config_store.get_config_by_name(
'three_level_quadratic')
objective_function = ObjectiveFunctionFactory.create_objective_function(
objective_function_config=objective_function_config)
output_space = SimpleHypergrid(name="output",
dimensions=[
ContinuousDimension(name='y',
min=-math.inf,
max=math.inf)
])
optimization_problem = OptimizationProblem(
parameter_space=objective_function.parameter_space,
objective_space=objective_function.output_space,
objectives=[Objective(name='y', minimize=True)])
n_samples = 100
parameter_df = optimization_problem.parameter_space.random_dataframe(
n_samples)
feature_df = optimization_problem.construct_feature_dataframe(
parameters_df=parameter_df)
assert feature_df.shape == (
n_samples,
len(optimization_problem.parameter_space.dimension_names) + 1)
expected_columns = sorted([
f"three_level_quadratic_config.{n}"
for n in optimization_problem.parameter_space.dimension_names
])
assert (
feature_df.columns[:-1].sort_values() == expected_columns).all()
assert feature_df.columns[-1] == "contains_context"
assert not feature_df.contains_context.any()
def test_hierarchical_quadratic_cold_start(self):
objective_function_config = objective_function_config_store.get_config_by_name(
'three_level_quadratic')
objective_function = ObjectiveFunctionFactory.create_objective_function(
objective_function_config=objective_function_config)
output_space = SimpleHypergrid(name="output",
dimensions=[
ContinuousDimension(name='y',
min=-math.inf,
max=math.inf)
])
optimization_problem = OptimizationProblem(
parameter_space=objective_function.parameter_space,
objective_space=output_space,
objectives=[Objective(name='y', minimize=True)])
num_restarts = 2
for restart_num in range(num_restarts):
optimizer_config = bayesian_optimizer_config_store.default
optimizer_config.min_samples_required_for_guided_design_of_experiments = 20
optimizer_config.homogeneous_random_forest_regression_model_config.n_estimators = 10
optimizer_config.homogeneous_random_forest_regression_model_config.decision_tree_regression_model_config.splitter = "best"
optimizer_config.homogeneous_random_forest_regression_model_config.decision_tree_regression_model_config.min_samples_to_fit = 10
optimizer_config.homogeneous_random_forest_regression_model_config.decision_tree_regression_model_config.n_new_samples_before_refit = 2
local_optimizer = self.bayesian_optimizer_factory.create_local_optimizer(
optimization_problem=optimization_problem,
optimizer_config=optimizer_config)
remote_optimizer = self.bayesian_optimizer_factory.create_remote_optimizer(
optimization_problem=optimization_problem,
optimizer_config=optimizer_config)
for bayesian_optimizer in [local_optimizer, remote_optimizer]:
num_guided_samples = 50
for i in range(num_guided_samples):
suggested_params = bayesian_optimizer.suggest()
y = objective_function.evaluate_point(suggested_params)
print(
f"[{i}/{num_guided_samples}] {suggested_params}, y: {y}"
)
input_values_df = pd.DataFrame({
param_name: [param_value]
for param_name, param_value in suggested_params
})
target_values_df = y.to_dataframe()
bayesian_optimizer.register(
feature_values_pandas_frame=input_values_df,
target_values_pandas_frame=target_values_df)
best_config_point, best_objective = bayesian_optimizer.optimum(
optimum_definition=OptimumDefinition.BEST_OBSERVATION)
print(
f"[Restart: {restart_num}/{num_restarts}] Optimum config: {best_config_point}, optimum objective: {best_objective}"
)
self.validate_optima(optimizer=bayesian_optimizer)
def __init__(self,
optimizer_evaluator_config: Point,
optimizer: OptimizerBase = None,
optimizer_config: Point = None,
objective_function: ObjectiveFunctionBase = None,
objective_function_config: Point = None):
assert optimizer_evaluator_config in optimizer_evaluator_config_store.parameter_space
assert (optimizer is None) != (
optimizer_config is None
), "A valid optimizer XOR a valid optimizer_config must be supplied."
assert (objective_function is None) != (objective_function_config is None),\
"A valid objective_function XOR a valid objective_function_config must be specified"
self.optimizer_evaluator_config = optimizer_evaluator_config
self.objective_function_config = None
self.objective_function = None
self.optimizer_config = None
self.optimizer = None
# Let's get the objective function assigned to self's fields.
#
if (objective_function_config
is not None) and (objective_function is None):
assert objective_function_config in objective_function_config_store.parameter_space
self.objective_function_config = objective_function_config
self.objective_function = ObjectiveFunctionFactory.create_objective_function(
objective_function_config)
elif (objective_function
is not None) and (objective_function_config is None):
self.objective_function_config = objective_function.objective_function_config
self.objective_function = objective_function
else:
# The assert above should have caught it but just in case someone removes or changes it.
#
assert False, "A valid objective_function XOR a valid objective_function_config must be specified"
# Let's get the optimizer and its config assigned to self's fields.
#
if (optimizer_config is not None) and (optimizer is None):
assert optimizer_config in bayesian_optimizer_config_store.parameter_space
optimization_problem = self.objective_function.default_optimization_problem
self.optimizer_config = optimizer_config
self.optimizer = BayesianOptimizerFactory().create_local_optimizer(
optimizer_config=optimizer_config,
optimization_problem=optimization_problem)
elif (optimizer is not None) and (optimizer_config is None):
# TODO: assert that the optimization problem in the optimizer matches the objective function.
# But this requires Hypergrid.__eq__.
#
self.optimizer_config = optimizer.optimizer_config
self.optimizer = optimizer
else:
# Again, the assert at the beginning of the constructor should have caught this. But more asserts => less bugs.
#
assert False, "A valid optimizer XOR a valid optimizer_config must be supplied."
def test_lasso_hierarchical_categorical_predictions(self):
objective_function_config = objective_function_config_store.get_config_by_name(
'three_level_quadratic')
objective_function = ObjectiveFunctionFactory.create_objective_function(
objective_function_config=objective_function_config)
rerf = RegressionEnhancedRandomForestRegressionModel(
model_config=self.model_config,
input_space=objective_function.parameter_space,
output_space=objective_function.output_space)
# fit model with same degree as true y
num_train_x = 100
x_train_df = objective_function.parameter_space.random_dataframe(
num_samples=num_train_x)
y_train_df = objective_function.evaluate_dataframe(x_train_df)
rerf.fit(x_train_df, y_train_df)
num_detected_features = len(rerf.detected_feature_indices_)
self.assertTrue(
rerf.root_model_gradient_coef_.shape ==
rerf.polynomial_features_powers_.shape,
'Gradient coefficient shape is incorrect')
self.assertTrue(
rerf.fit_X_.shape == (num_train_x,
rerf.polynomial_features_powers_.shape[0]),
'Design matrix shape is incorrect')
self.assertTrue(
rerf.partial_hat_matrix_.shape == (num_detected_features,
num_detected_features),
'Hat matrix shape is incorrect')
self.assertTrue(rerf.polynomial_features_powers_.shape == (28, 8),
'PolynomalFeature.power_ shape is incorrect')
# test predictions
predicted_value_col = Prediction.LegalColumnNames.PREDICTED_VALUE.value
num_test_x = 10
# by generating a single X feature on which to make the predictions, the
y_test_list = []
predicted_y_list = []
for _ in range(num_test_x):
x_test_df = objective_function.parameter_space.random_dataframe(
num_samples=1)
y_test_df = objective_function.evaluate_dataframe(x_test_df)
y_test_list.append(y_test_df['y'].values[0])
predictions = rerf.predict(x_test_df)
pred_df = predictions.get_dataframe()
predicted_y_list.append(pred_df[predicted_value_col].values[0])
predicted_y = np.array(predicted_y_list)
y_test = np.array(y_test_list)
residual_sum_of_squares = ((y_test - predicted_y)**2).sum()
total_sum_of_squares = ((y_test - y_test.mean())**2).sum()
unexplained_variance = residual_sum_of_squares / total_sum_of_squares
self.assertTrue(unexplained_variance < 10**-4,
'1 - R^2 larger than expected')
def test_lasso_hierarchical_categorical_predictions(self):
random.seed(11001)
objective_function_config = objective_function_config_store.get_config_by_name(
'three_level_quadratic')
objective_function = ObjectiveFunctionFactory.create_objective_function(
objective_function_config=objective_function_config)
rerf = RegressionEnhancedRandomForestRegressionModel(
model_config=self.model_config,
input_space=objective_function.parameter_space,
output_space=objective_function.output_space)
# fit model with same degree as true y
# The input space consists of 3 2-d domains 200 x 200 units. Hence random samples smaller than a certain size will produce too few points to
# train reliable models.
# TODO: Good place to use a non-random training set design
num_train_x = 600
x_train_df = objective_function.parameter_space.random_dataframe(
num_samples=num_train_x)
y_train_df = objective_function.evaluate_dataframe(x_train_df)
rerf.fit(x_train_df, y_train_df)
num_detected_features = len(rerf.detected_feature_indices_)
self.assertTrue(
rerf.root_model_gradient_coef_.shape ==
rerf.polynomial_features_powers_.shape,
'Gradient coefficient shape is incorrect')
self.assertTrue(
rerf.fit_X_.shape == (num_train_x,
rerf.polynomial_features_powers_.shape[0]),
'Design matrix shape is incorrect')
self.assertTrue(
rerf.partial_hat_matrix_.shape == (num_detected_features,
num_detected_features),
'Hat matrix shape is incorrect')
self.assertTrue(rerf.polynomial_features_powers_.shape == (34, 9),
'PolynomalFeature.power_ shape is incorrect')
# test predictions
predicted_value_col = Prediction.LegalColumnNames.PREDICTED_VALUE.value
num_test_x = 50
x_test_df = objective_function.parameter_space.random_dataframe(
num_samples=num_test_x)
predictions = rerf.predict(x_test_df)
pred_df = predictions.get_dataframe()
predicted_y = pred_df[predicted_value_col].to_numpy()
y_test = objective_function.evaluate_dataframe(
x_test_df).to_numpy().reshape(-1)
residual_sum_of_squares = ((y_test - predicted_y)**2).sum()
total_sum_of_squares = ((y_test - y_test.mean())**2).sum()
unexplained_variance = residual_sum_of_squares / total_sum_of_squares
test_threshold = 10**-3
self.assertTrue(
unexplained_variance < test_threshold,
f'1 - R^2 = {unexplained_variance} larger than expected ({test_threshold})'
)
def setup_class(cls):
""" Set's up all the objects needed to test the RandomSearchOptimizer
To test the RandomSearchOptimizer we need to first construct:
* an optimization problem
* a utility function
To construct a utility function we need the same set up as in the TestConfidenceBoundUtilityFunction
test.
:return:
"""
global_values.declare_singletons()
global_values.tracer = Tracer(actor_id=cls.__name__, thread_id=0)
objective_function_config = objective_function_config_store.get_config_by_name(
'2d_quadratic_concave_up')
objective_function = ObjectiveFunctionFactory.create_objective_function(
objective_function_config=objective_function_config)
cls.input_space = objective_function.parameter_space
cls.output_space = objective_function.output_space
cls.input_values_dataframe = objective_function.parameter_space.random_dataframe(
num_samples=2500)
cls.output_values_dataframe = objective_function.evaluate_dataframe(
cls.input_values_dataframe)
cls.model_config = homogeneous_random_forest_config_store.default
print(cls.model_config)
cls.model = MultiObjectiveHomogeneousRandomForest(
model_config=cls.model_config,
input_space=cls.input_space,
output_space=cls.output_space)
cls.model.fit(cls.input_values_dataframe,
cls.output_values_dataframe,
iteration_number=len(cls.input_values_dataframe.index))
cls.utility_function_config = Point(
utility_function_name="upper_confidence_bound_on_improvement",
alpha=0.05)
cls.optimization_problem = OptimizationProblem(
parameter_space=cls.input_space,
objective_space=cls.output_space,
objectives=[Objective(name='y', minimize=True)])
cls.utility_function = ConfidenceBoundUtilityFunction(
function_config=cls.utility_function_config,
surrogate_model=cls.model,
minimize=cls.optimization_problem.objectives[0].minimize)
def test_default_config(self, objective_function_config_name):
objective_function_config = objective_function_config_store.get_config_by_name(objective_function_config_name)
objective_function = ObjectiveFunctionFactory.create_objective_function(objective_function_config)
lasso_model_config = lasso_cross_validated_config_store.default
multi_objective_rf = MultiObjectiveLassoCrossValidated(
model_config=lasso_model_config,
input_space=objective_function.parameter_space,
output_space=objective_function.output_space,
logger=self.logger
)
if objective_function_config_name == '2d_hypersphere_minimize_some':
num_training_samples = 25
num_testing_samples = 10
elif objective_function_config_name == '10d_hypersphere_minimize_some':
num_training_samples = 50
num_testing_samples = 10
elif objective_function_config_name == '5_mutually_exclusive_polynomials':
num_training_samples = 100
num_testing_samples = 50
else:
assert False
train_params_df = objective_function.parameter_space.random_dataframe(num_samples=num_training_samples)
train_objectives_df = objective_function.evaluate_dataframe(train_params_df)
test_params_df = objective_function.parameter_space.random_dataframe(num_samples=num_testing_samples)
test_objectives_df = objective_function.evaluate_dataframe(test_params_df)
multi_objective_rf.fit(features_df=train_params_df, targets_df=train_objectives_df, iteration_number=num_training_samples)
multi_objective_predictions = multi_objective_rf.predict(features_df=train_params_df, include_only_valid_rows=True)
# TRAINING DATA
#
print("------------------------------------------------------------------------------------")
print("--------------------------------------- TRAIN --------------------------------------")
print("------------------------------------------------------------------------------------")
training_gof = multi_objective_rf.compute_goodness_of_fit(features_df=train_params_df, targets_df=train_objectives_df, data_set_type=DataSetType.TRAIN)
for objective_name in objective_function.output_space.dimension_names:
print("------------------------------------------------------------------------------------")
print(objective_name)
print(training_gof[objective_name].to_json(indent=2))
# TESTING DATA
print("------------------------------------------------------------------------------------")
print("--------------------------------------- TEST ---------------------------------------")
print("------------------------------------------------------------------------------------")
testing_gof = multi_objective_rf.compute_goodness_of_fit(features_df=test_params_df, targets_df=test_objectives_df, data_set_type=DataSetType.TEST_KNOWN_RANDOM)
for objective_name in objective_function.output_space.dimension_names:
print("------------------------------------------------------------------------------------")
print(objective_name)
print(testing_gof[objective_name].to_json(indent=2))
def test_lasso_hierarchical_categorical_predictions(self):
random.seed(11001)
objective_function_config = objective_function_config_store.get_config_by_name(
'three_level_quadratic')
objective_function = ObjectiveFunctionFactory.create_objective_function(
objective_function_config=objective_function_config)
polynomial_features_adapter = ContinuousToPolynomialBasisHypergridAdapter(
adaptee=objective_function.parameter_space,
degree=2,
include_bias=True,
interaction_only=False)
lasso_cross_validated_model = LassoCrossValidatedRegressionModel(
model_config=self.model_config,
input_space=polynomial_features_adapter,
output_space=objective_function.output_space)
# since the model input_space stacked the polynomial basis function on in the original input space, we can skip validating input features
lasso_cross_validated_model.skip_input_filtering_on_predict = True
# fit model with same degree as true y
# The input space consists of 3 2-d domains 200 x 200 units. Hence random samples smaller than a certain size will produce too few points to
# train reliable models.
# TODO: Good place to use a non-random training set design
num_train_x = 300
x_train_df = objective_function.parameter_space.random_dataframe(
num_samples=num_train_x)
y_train_df = objective_function.evaluate_dataframe(x_train_df)
lasso_cross_validated_model.fit(x_train_df,
y_train_df,
iteration_number=0)
# test predictions
num_test_x = 50
x_test_df = objective_function.parameter_space.random_dataframe(
num_samples=num_test_x)
y_test = objective_function.evaluate_dataframe(
x_test_df).to_numpy().reshape(-1)
predictions = lasso_cross_validated_model.predict(x_test_df)
pred_df = predictions.get_dataframe()
predicted_value_col = Prediction.LegalColumnNames.PREDICTED_VALUE.value
predicted_y = pred_df[predicted_value_col].to_numpy()
residual_sum_of_squares = ((y_test - predicted_y)**2).sum()
total_sum_of_squares = ((y_test - y_test.mean())**2).sum()
unexplained_variance = residual_sum_of_squares / total_sum_of_squares
test_threshold = 10**-6
print(f'Asserting {unexplained_variance} < {test_threshold}')
assert unexplained_variance < test_threshold, f'1 - R^2 = {unexplained_variance} larger than expected ({test_threshold})'
def test_bayesian_optimizer_on_simple_2d_quadratic_function_pre_heated(
self):
""" Tests the bayesian optimizer on a simple quadratic function first feeding the optimizer a lot of data.
"""
objective_function_config = objective_function_config_store.get_config_by_name(
'2d_quadratic_concave_up')
objective_function = ObjectiveFunctionFactory.create_objective_function(
objective_function_config)
random_params_df = objective_function.parameter_space.random_dataframe(
num_samples=10000)
y_df = objective_function.evaluate_dataframe(random_params_df)
optimization_problem = OptimizationProblem(
parameter_space=objective_function.parameter_space,
objective_space=objective_function.output_space,
objectives=[Objective(name='y', minimize=True)])
bayesian_optimizer = BayesianOptimizer(
optimization_problem=optimization_problem,
optimizer_config=bayesian_optimizer_config_store.default,
logger=self.logger)
bayesian_optimizer.register(random_params_df, y_df)
num_guided_samples = 20
for i in range(num_guided_samples):
# Suggest the parameters
suggested_params = bayesian_optimizer.suggest()
target_value = objective_function.evaluate_point(suggested_params)
self.logger.info(
f"[{i}/{num_guided_samples}] suggested params: {suggested_params}, target: {target_value}"
)
# Register the observation with the optimizer
bayesian_optimizer.register(suggested_params.to_dataframe(),
target_value.to_dataframe())
self.validate_optima(bayesian_optimizer)
best_config_point, best_objective = bayesian_optimizer.optimum()
self.logger.info(
f"Optimum: {best_objective} Best Configuration: {best_config_point}"
)
trace_output_path = os.path.join(self.temp_dir, "PreHeatedTrace.json")
self.logger.info(f"Writing trace to {trace_output_path}")
global_values.tracer.dump_trace_to_file(
output_file_path=trace_output_path)
global_values.tracer.clear_events()
def test_glow_worm_on_three_level_quadratic(self):
output_space = SimpleHypergrid(name="output",
dimensions=[
ContinuousDimension(name='y',
min=-math.inf,
max=math.inf)
])
objective_function_config = objective_function_config_store.get_config_by_name(
'three_level_quadratic')
objective_function = ObjectiveFunctionFactory.create_objective_function(
objective_function_config=objective_function_config)
# Let's warm up the model a bit
#
num_warmup_samples = 1000
random_params_df = objective_function.parameter_space.random_dataframe(
num_samples=num_warmup_samples)
y = objective_function.evaluate_dataframe(random_params_df)
model = HomogeneousRandomForestRegressionModel(
model_config=self.model_config,
input_space=objective_function.parameter_space,
output_space=output_space)
model.fit(feature_values_pandas_frame=random_params_df,
target_values_pandas_frame=y,
iteration_number=num_warmup_samples)
optimization_problem = OptimizationProblem(
parameter_space=objective_function.parameter_space,
objective_space=output_space,
objectives=[Objective(name='y', minimize=True)])
utility_function = ConfidenceBoundUtilityFunction(
function_config=self.utility_function_config,
surrogate_model=model,
minimize=optimization_problem.objectives[0].minimize)
glow_worm_swarm_optimizer = GlowWormSwarmOptimizer(
optimization_problem=optimization_problem,
utility_function=utility_function,
optimizer_config=glow_worm_swarm_optimizer_config_store.default)
num_iterations = 5
for i in range(num_iterations):
suggested_params = glow_worm_swarm_optimizer.suggest()
print(f"[{i+1}/{num_iterations}] {suggested_params.to_json()}")
self.assertTrue(
suggested_params in objective_function.parameter_space)
def test_named_configs(self, config_name):
objective_function_config = objective_function_config_store.get_config_by_name(
config_name)
print(objective_function_config.to_json(indent=2))
objective_function = ObjectiveFunctionFactory.create_objective_function(
objective_function_config=objective_function_config)
for _ in range(100):
random_point = objective_function.parameter_space.random()
value = objective_function.evaluate_point(random_point)
assert value in objective_function.output_space
for i in range(1, 100):
random_dataframe = objective_function.parameter_space.random_dataframe(
num_samples=i)
values_df = objective_function.evaluate_dataframe(random_dataframe)
assert values_df.index.equals(random_dataframe.index)
def test_bayesian_optimizer_on_simple_2d_quadratic_function_cold_start(
self):
""" Tests the bayesian optimizer on a simple quadratic function with no prior data.
"""
objective_function_config = objective_function_config_store.get_config_by_name(
'2d_quadratic_concave_up')
objective_function = ObjectiveFunctionFactory.create_objective_function(
objective_function_config)
optimization_problem = OptimizationProblem(
parameter_space=objective_function.parameter_space,
objective_space=objective_function.output_space,
objectives=[Objective(name='y', minimize=True)])
bayesian_optimizer = BayesianOptimizer(
optimization_problem=optimization_problem,
optimizer_config=bayesian_optimizer_config_store.default,
logger=self.logger)
num_guided_samples = 1000
for i in range(num_guided_samples):
suggested_params = bayesian_optimizer.suggest()
target_value = objective_function.evaluate_point(suggested_params)
self.logger.info(
f"[{i}/{num_guided_samples}] suggested params: {suggested_params}, target: {target_value}"
)
bayesian_optimizer.register(suggested_params.to_dataframe(),
target_value.to_dataframe())
if i > 20 and i % 20 == 0:
best_config_point, best_objective = bayesian_optimizer.optimum(
)
self.logger.info(
f"[{i}/{num_guided_samples}] Optimum config: {best_config_point}, optimum objective: {best_objective}"
)
self.validate_optima(bayesian_optimizer)
best_config, optimum = bayesian_optimizer.optimum()
assert objective_function.parameter_space.contains_point(best_config)
assert objective_function.output_space.contains_point(optimum)
_, all_targets = bayesian_optimizer.get_all_observations()
assert optimum.y == all_targets.min()[0]
self.logger.info(
f"Optimum: {optimum} best configuration: {best_config}")
def setUp(self):
self.logger = create_logger(self.__class__.__name__)
# Start up the gRPC service.
#
self.server = OptimizerMicroserviceServer(port=50051, num_threads=10)
self.server.start()
self.optimizer_service_channel = grpc.insecure_channel('localhost:50051')
self.bayesian_optimizer_factory = BayesianOptimizerFactory(grpc_channel=self.optimizer_service_channel, logger=self.logger)
self.optimizer_monitor = OptimizerMonitor(grpc_channel=self.optimizer_service_channel, logger=self.logger)
objective_function_config = objective_function_config_store.get_config_by_name('2d_quadratic_concave_up')
self.objective_function = ObjectiveFunctionFactory.create_objective_function(objective_function_config)
self.optimization_problem = OptimizationProblem(
parameter_space=self.objective_function.parameter_space,
objective_space=self.objective_function.output_space,
objectives=[Objective(name='y', minimize=True)]
)
def test_hierarchical_quadratic_cold_start(self):
objective_function_config = objective_function_config_store.get_config_by_name(
'three_level_quadratic')
objective_function = ObjectiveFunctionFactory.create_objective_function(
objective_function_config=objective_function_config)
output_space = SimpleHypergrid(name="output",
dimensions=[
ContinuousDimension(name='y',
min=-math.inf,
max=math.inf)
])
optimization_problem = OptimizationProblem(
parameter_space=objective_function.parameter_space,
objective_space=output_space,
objectives=[Objective(name='y', minimize=True)])
num_restarts = 1000
for restart_num in range(num_restarts):
bayesian_optimizer = BayesianOptimizer(
optimization_problem=optimization_problem,
optimizer_config=bayesian_optimizer_config_store.default,
logger=self.logger)
num_guided_samples = 200
for i in range(num_guided_samples):
suggested_params = bayesian_optimizer.suggest()
y = objective_function.evaluate_point(suggested_params)
self.logger.info(
f"[{i}/{num_guided_samples}] {suggested_params}, y: {y}")
input_values_df = suggested_params.to_dataframe()
target_values_df = y.to_dataframe()
bayesian_optimizer.register(input_values_df, target_values_df)
self.validate_optima(bayesian_optimizer)
best_config_point, best_objective = bayesian_optimizer.optimum()
self.logger.info(
f"[{restart_num}/{num_restarts}] Optimum config: {best_config_point}, optimum objective: {best_objective}"
)
def __init__(
self,
model_config: Point,
input_space: Hypergrid = None,
output_space: Hypergrid = None,
logger=None
):
assert model_config in multi_objective_pass_through_model_config_store.parameter_space
self.objective_function = ObjectiveFunctionFactory.create_objective_function(objective_function_config=model_config.objective_function_config)
MultiObjectiveRegressionModel.__init__(
self,
model_type=type(self),
model_config=model_config,
input_space=self.objective_function.default_optimization_problem.feature_space,
output_space=self.objective_function.output_space
)
if logger is None:
logger = create_logger(self.__class__.__name__)
self.logger = logger
def test_bayesian_optimizer_with_random_near_incumbent(self):
objective_function_config = objective_function_config_store.get_config_by_name(
'multi_objective_waves_3_params_2_objectives_half_pi_phase_difference'
)
objective_function = ObjectiveFunctionFactory.create_objective_function(
objective_function_config=objective_function_config)
optimization_problem = objective_function.default_optimization_problem
optimizer_config = bayesian_optimizer_config_store.get_config_by_name(
'default_with_random_near_incumbent_config')
assert optimizer_config.experiment_designer_config.numeric_optimizer_implementation == "RandomNearIncumbentOptimizer"
optimizer_config.experiment_designer_config.fraction_random_suggestions = 0
# Let's give it a little more resolution.
#
optimizer_config.experiment_designer_config.multi_objective_probability_of_improvement_config.num_monte_carlo_samples = 200
bayesian_optimizer = self.bayesian_optimizer_factory.create_local_optimizer(
optimization_problem=optimization_problem,
optimizer_config=optimizer_config)
random_params_df = objective_function.parameter_space.random_dataframe(
num_samples=1000)
objectives_df = objective_function.evaluate_dataframe(random_params_df)
bayesian_optimizer.register(
parameter_values_pandas_frame=random_params_df,
target_values_pandas_frame=objectives_df)
num_suggestions = 10
for suggestion_number in range(num_suggestions):
parameters = bayesian_optimizer.suggest()
objectives = objective_function.evaluate_point(parameters)
self.logger.info(
f"[{suggestion_number}/{num_suggestions}] parameters: {parameters}, objectives: {objectives}"
)
bayesian_optimizer.register(
parameter_values_pandas_frame=parameters.to_dataframe(),
target_values_pandas_frame=objectives.to_dataframe())
def setup_method(self, method):
self.logger = create_logger(self.__class__.__name__)
# Start up the gRPC service. Try a bunch of times before giving up.
#
max_num_tries = 100
num_tries = 0
for port in range(50051, 50051 + max_num_tries):
num_tries += 1
try:
self.server = OptimizerServicesServer(port=port,
num_threads=10)
self.server.start()
self.port = port
break
except:
self.logger.info(
f"Failed to create OptimizerMicroserviceServer on port {port}"
)
if num_tries == max_num_tries:
raise
self.optimizer_service_channel = grpc.insecure_channel(
f'localhost:{self.port}')
self.bayesian_optimizer_factory = BayesianOptimizerFactory(
grpc_channel=self.optimizer_service_channel, logger=self.logger)
self.optimizer_monitor = OptimizerMonitor(
grpc_channel=self.optimizer_service_channel, logger=self.logger)
objective_function_config = objective_function_config_store.get_config_by_name(
'2d_quadratic_concave_up')
self.objective_function = ObjectiveFunctionFactory.create_objective_function(
objective_function_config)
self.optimization_problem = OptimizationProblem(
parameter_space=self.objective_function.parameter_space,
objective_space=self.objective_function.output_space,
objectives=[Objective(name='y', minimize=True)])
def test_named_configs(self):
named_configs = objective_function_config_store.list_named_configs()
objective_function_configs_to_test = [
named_config.config_point for named_config in named_configs
]
for objective_function_config in objective_function_configs_to_test:
print(objective_function_config.to_json(indent=2))
objective_function = ObjectiveFunctionFactory.create_objective_function(
objective_function_config=objective_function_config)
default_polynomials_domain = objective_function.parameter_space
for _ in range(100):
random_point = default_polynomials_domain.random()
value = objective_function.evaluate_point(random_point)
self.assertTrue(value in objective_function.output_space)
for i in range(1, 100):
random_dataframe = default_polynomials_domain.random_dataframe(
num_samples=i)
values_df = objective_function.evaluate_dataframe(
random_dataframe)
self.assertTrue(values_df.index.equals(random_dataframe.index))
def test_rerf_hierarchical_categorical_predictions(self):
random.seed(11001)
objective_function_config = objective_function_config_store.get_config_by_name('three_level_quadratic')
objective_function = ObjectiveFunctionFactory.create_objective_function(objective_function_config=objective_function_config)
rerf = RegressionEnhancedRandomForestRegressionModel(
model_config=self.model_config,
input_space=objective_function.parameter_space,
output_space=objective_function.output_space
)
# fit model with same degree as true y
# The input space consists of 3 2-d domains 200 x 200 units. Hence random samples smaller than a certain size will produce too few points to
# train reliable models.
# TODO: Good place to use a non-random training set design
num_train_x = 300
x_train_df = objective_function.parameter_space.random_dataframe(num_samples=num_train_x)
y_train_df = objective_function.evaluate_dataframe(x_train_df)
rerf.fit(x_train_df, y_train_df)
# test predictions
predicted_value_col = Prediction.LegalColumnNames.PREDICTED_VALUE.value
num_test_x = 50
x_test_df = objective_function.parameter_space.random_dataframe(num_samples=num_test_x)
y_test = objective_function.evaluate_dataframe(x_test_df).to_numpy().reshape(-1)
predictions = rerf.predict(x_test_df)
pred_df = predictions.get_dataframe()
predicted_y = pred_df[predicted_value_col].to_numpy()
residual_sum_of_squares = ((y_test - predicted_y) ** 2).sum()
total_sum_of_squares = ((y_test - y_test.mean()) ** 2).sum()
unexplained_variance = residual_sum_of_squares / total_sum_of_squares
test_threshold = 10**-6
print(unexplained_variance, test_threshold)
assert unexplained_variance < test_threshold, f'1 - R^2 = {unexplained_variance} larger than expected ({test_threshold})'
def test_optimizer_with_random_config_random_objective(self, i):
objective_function_config = objective_function_config_store.parameter_space.random(
)
objective_function = ObjectiveFunctionFactory.create_objective_function(
objective_function_config)
optimization_problem = objective_function.default_optimization_problem
optimizer_config = bayesian_optimizer_config_store.parameter_space.random(
)
optimizer_config.min_samples_required_for_guided_design_of_experiments = max(
min(
optimizer_config.
min_samples_required_for_guided_design_of_experiments, 100),
20)
if optimizer_config.surrogate_model_implementation == "HomogeneousRandomForestRegressionModel":
rf_config = optimizer_config.homogeneous_random_forest_regression_model_config
rf_config.n_estimators = min(rf_config.n_estimators, 20)
if optimizer_config.surrogate_model_implementation == MultiObjectiveRegressionEnhancedRandomForest.__name__:
optimizer_config.min_samples_required_for_guided_design_of_experiments = 25
rerf_model_config = optimizer_config.regression_enhanced_random_forest_regression_model_config
rerf_model_config.max_basis_function_degree = min(
rerf_model_config.max_basis_function_degree, 2)
# increased polynomial degree requires more data to estimate model parameters (poly term coefficients)
optimizer_config.min_samples_required_for_guided_design_of_experiments += 25 * (
rerf_model_config.max_basis_function_degree - 1)
rf_model_config = rerf_model_config.sklearn_random_forest_regression_model_config
rf_model_config.perform_initial_random_forest_hyper_parameter_search = False
rf_model_config.max_depth = min(rf_model_config.max_depth, 10)
rf_model_config.n_jobs = min(rf_model_config.n_jobs, 4)
print(
f"[{i+1}] Creating a bayesian optimizer with config: {optimizer_config} \n\n\nObjective function config: {objective_function_config}"
)
bayesian_optimizer = self.bayesian_optimizer_factory.create_remote_optimizer(
optimization_problem=optimization_problem,
optimizer_config=optimizer_config)
registered_params_df, registered_objectives_df = self.optimize_objective_function(
optimizer=bayesian_optimizer,
objective_function=objective_function,
num_iterations=20)
# Apparently the to_json/from_json loses precision so we explicitly lose it here so that we can do the comparison.
#
registered_features_json = registered_params_df.to_json(
orient='index', double_precision=15)
registered_objectives_json = registered_objectives_df.to_json(
orient='index', double_precision=15)
# Apparently the jitter is too good and we actually have to use the json strings or they will be optimized away.
#
assert len(registered_features_json) > 0
assert len(registered_objectives_json) > 0
registered_params_df = pd.read_json(registered_features_json,
orient='index')
registered_objectives_df = pd.read_json(registered_objectives_json,
orient='index')
observed_params_df, observed_objectives_df, _ = bayesian_optimizer.get_all_observations(
)
numeric_params_names = [
dimension.name
for dimension in optimization_problem.parameter_space.dimensions
if (isinstance(dimension, (ContinuousDimension, DiscreteDimension))
or (isinstance(dimension, CategoricalDimension)
and dimension.is_numeric)) and (
dimension.name in registered_params_df.columns) and (
dimension.name in observed_params_df.columns)
]
numeric_params_df = registered_params_df[numeric_params_names]
observed_numeric_params_df = observed_params_df[numeric_params_names]
assert (np.abs(
numeric_params_df.fillna(0) - observed_numeric_params_df.fillna(0))
< 0.00000001).all().all()
assert (np.abs(registered_objectives_df - observed_objectives_df) <
0.00000001).all().all()
def test_hyperspheres(self, minimize, num_output_dimensions, num_points):
"""Uses a hypersphere to validate that ParetoFrontier can correctly identify pareto-optimal points."""
hypersphere_radius = 10
objective_function_config = Point(
implementation=Hypersphere.__name__,
hypersphere_config=Point(
num_objectives=num_output_dimensions,
minimize=minimize,
radius=hypersphere_radius
)
)
objective_function = ObjectiveFunctionFactory.create_objective_function(objective_function_config=objective_function_config)
optimization_problem = objective_function.default_optimization_problem
random_params_df = optimization_problem.parameter_space.random_dataframe(num_points)
# Let's randomly subsample 10% of points in random_params_df and make those points pareto optimal.
#
optimal_points_index = random_params_df.sample(
frac=0.1,
replace=False,
axis='index'
).index
random_params_df.loc[optimal_points_index, ['radius']] = hypersphere_radius
objectives_df = objective_function.evaluate_dataframe(dataframe=random_params_df)
# Conveniently, we can double check all of our math by invoking Pythagoras. Basically:
#
# assert y0**2 + y1**2 + ... == radius**2
#
assert (np.power(objectives_df, 2).sum(axis=1) - np.power(random_params_df["radius"], 2) < 0.000001).all()
# Just a few more sanity checks before we do the pareto computation.
#
if minimize == "all":
assert (objectives_df <= 0).all().all()
elif minimize == "none":
assert (objectives_df >= 0).all().all()
else:
for column, minimize_column in zip(objectives_df, objective_function.minimize_mask):
if minimize_column:
assert (objectives_df[column] <= 0).all()
else:
assert (objectives_df[column] >= 0).all()
pareto_frontier = ParetoFrontier(
optimization_problem=optimization_problem,
objectives_df=objectives_df,
parameters_df=random_params_df
)
pareto_df = pareto_frontier.pareto_df
# We know that all of the pareto efficient points must be on the frontier.
#
assert optimal_points_index.difference(pareto_df.index.intersection(optimal_points_index)).empty
assert len(pareto_df.index) >= len(optimal_points_index)
# If we flip all minimized objectives, we can assert on even more things.
#
for column, minimize_column in zip(objectives_df, objective_function.minimize_mask):
if minimize_column:
objectives_df[column] = -objectives_df[column]
pareto_df[column] = - pareto_df[column]
non_pareto_index = objectives_df.index.difference(pareto_df.index)
for i, row in pareto_df.iterrows():
# Now let's make sure that no point in pareto is dominated by any non-pareto point.
#
assert (objectives_df.loc[non_pareto_index] < row).any(axis=1).sum() == len(non_pareto_index)
# Let's also make sure that no point on the pareto is dominated by any other point there.
#
other_rows = pareto_df.index.difference([i])
assert (pareto_df.loc[other_rows] > row).all(axis=1).sum() == 0
def test_pareto_frontier_volume_on_hyperspheres(self, minimize, num_dimensions):
"""Uses a known formula for the volume of the hyperspheres to validate the accuracy of the pareto frontier estimate.
:return:
"""
hypersphere_radius = 10
inscribed_hypersphere_radius = 7 # For computing lower bound on volume
# In order to validate the estimates, we must know the allowable upper and lower bounds.
# We know that the estimate should not be higher than the volume of the n-ball (ball in n-dimensions).
# We can also come up with a lower bound, by computing a volume of a slightly smaller ball inscribed
# into the hypersphere. Note that the volume of an n-ball can be computed recursively, so we keep track
# of n-ball volumes in lower dimensions.
upper_bounds_on_sphere_volume_by_num_dimensions = {}
lower_bounds_on_sphere_volume_by_num_dimensions = {}
# Compute the base cases for the recursion.
#
upper_bounds_on_sphere_volume_by_num_dimensions[2] = np.pi * (hypersphere_radius ** 2)
upper_bounds_on_sphere_volume_by_num_dimensions[3] = (4 / 3) * np.pi * (hypersphere_radius ** 3)
lower_bounds_on_sphere_volume_by_num_dimensions[2] = np.pi * (inscribed_hypersphere_radius ** 2)
lower_bounds_on_sphere_volume_by_num_dimensions[3] = (4 / 3) * np.pi * (inscribed_hypersphere_radius ** 3)
# Compute the recursive values.
#
for n in range(4, num_dimensions + 1):
upper_bounds_on_sphere_volume_by_num_dimensions[n] = upper_bounds_on_sphere_volume_by_num_dimensions[n-2] * 2 * np.pi * (hypersphere_radius ** 2) / n
lower_bounds_on_sphere_volume_by_num_dimensions[n] = lower_bounds_on_sphere_volume_by_num_dimensions[n-2] * 2 * np.pi * (inscribed_hypersphere_radius ** 2) / n
objective_function_config = Point(
implementation=Hypersphere.__name__,
hypersphere_config=Point(
num_objectives=num_dimensions,
minimize=minimize,
radius=hypersphere_radius
)
)
objective_function = ObjectiveFunctionFactory.create_objective_function(objective_function_config)
parameter_space = objective_function.parameter_space
num_points = max(4, num_dimensions)
linspaces = []
for dimension in parameter_space.dimensions:
if dimension.name == 'radius':
linspaces.append(np.array([hypersphere_radius]))
else:
linspaces.append(dimension.linspace(num_points))
meshgrids = np.meshgrid(*linspaces)
reshaped_meshgrids = [meshgrid.reshape(-1) for meshgrid in meshgrids]
params_df = pd.DataFrame({
dim_name: reshaped_meshgrids[i]
for i, dim_name
in enumerate(parameter_space.dimension_names)
})
objectives_df = objective_function.evaluate_dataframe(params_df)
pareto_frontier = ParetoFrontier(
optimization_problem=objective_function.default_optimization_problem,
objectives_df=objectives_df,
parameters_df=params_df
)
print("Num points in pareto frontier: ", len(objectives_df.index))
assert len(pareto_frontier.pareto_df.index) == len(objectives_df.index)
pareto_volume_estimator = pareto_frontier.approximate_pareto_volume(num_samples=1000000)
ci_lower_bound, ci_upper_bound = pareto_volume_estimator.get_two_sided_confidence_interval_on_pareto_volume(alpha=0.05)
lower_bound_on_pareto_volume = lower_bounds_on_sphere_volume_by_num_dimensions[num_dimensions] / (2**num_dimensions)
upper_bound_on_pareto_volume = upper_bounds_on_sphere_volume_by_num_dimensions[num_dimensions] / (2**num_dimensions)
print("True bounds:", lower_bound_on_pareto_volume, upper_bound_on_pareto_volume)
print("CI bounds: ", ci_lower_bound, ci_upper_bound)
assert lower_bound_on_pareto_volume <= ci_lower_bound <= ci_upper_bound <= upper_bound_on_pareto_volume
def test_hierarchical_quadratic_cold_start_random_configs(self):
objective_function_config = objective_function_config_store.get_config_by_name(
'three_level_quadratic')
objective_function = ObjectiveFunctionFactory.create_objective_function(
objective_function_config=objective_function_config)
output_space = SimpleHypergrid(name="output",
dimensions=[
ContinuousDimension(name='y',
min=-math.inf,
max=math.inf)
])
optimization_problem = OptimizationProblem(
parameter_space=objective_function.parameter_space,
objective_space=output_space,
objectives=[Objective(name='y', minimize=True)])
random_state = random.Random()
num_restarts = 200
for restart_num in range(num_restarts):
# Let's set up random seeds so that we can easily repeat failed experiments
#
random_state.seed(restart_num)
bayesian_optimizer_config_store.parameter_space.random_state = random_state
objective_function.parameter_space.random_state = random_state
optimizer_config = bayesian_optimizer_config_store.parameter_space.random(
)
# The goal here is to make sure the optimizer works with a lot of different configurations.
# So let's make sure each run is not too long.
#
optimizer_config.min_samples_required_for_guided_design_of_experiments = 50
if optimizer_config.surrogate_model_implementation == HomogeneousRandomForestRegressionModel.__name__:
random_forest_config = optimizer_config.homogeneous_random_forest_regression_model_config
random_forest_config.n_estimators = min(
random_forest_config.n_estimators, 5)
decision_tree_config = random_forest_config.decision_tree_regression_model_config
decision_tree_config.min_samples_to_fit = 10
decision_tree_config.n_new_samples_before_refit = 10
if optimizer_config.experiment_designer_config.numeric_optimizer_implementation == GlowWormSwarmOptimizer.__name__:
optimizer_config.experiment_designer_config.glow_worm_swarm_optimizer_config.num_iterations = 5
self.logger.info(
f"[Restart: {restart_num}/{num_restarts}] Creating a BayesianOptimimizer with the following config: "
)
self.logger.info(
f"Optimizer config: {optimizer_config.to_json(indent=2)}")
bayesian_optimizer = BayesianOptimizer(
optimization_problem=optimization_problem,
optimizer_config=optimizer_config,
logger=self.logger)
num_guided_samples = optimizer_config.min_samples_required_for_guided_design_of_experiments + 50
for i in range(num_guided_samples):
suggested_params = bayesian_optimizer.suggest()
y = objective_function.evaluate_point(suggested_params)
self.logger.info(
f"[Restart: {restart_num}/{num_restarts}][Sample: {i}/{num_guided_samples}] {suggested_params}, y: {y}"
)
input_values_df = suggested_params.to_dataframe()
target_values_df = y.to_dataframe()
bayesian_optimizer.register(input_values_df, target_values_df)
best_config_point, best_objective = bayesian_optimizer.optimum()
self.logger.info(
f"[Restart: {restart_num}/{num_restarts}] Optimum config: {best_config_point}, optimum objective: {best_objective}"
)
def test_optimizers_against_untrained_models(self, objective_function_config_name, utility_function_type_name, utility_function_optimizer_type_name):
"""Tests that the utility function optimizers throw appropriate exceptions when the utility function cannot be evaluated.
:return:
"""
self.logger.info(f"Creating test artifacts for objective function: {objective_function_config_name}, utility_function: {utility_function_optimizer_type_name}, optimizer: {utility_function_optimizer_type_name}.")
model_config = homogeneous_random_forest_config_store.default
objective_function_config = objective_function_config_store.get_config_by_name(objective_function_config_name)
objective_function = ObjectiveFunctionFactory.create_objective_function(objective_function_config=objective_function_config)
optimization_problem = objective_function.default_optimization_problem
model = MultiObjectiveHomogeneousRandomForest(
model_config=model_config,
input_space=optimization_problem.feature_space,
output_space=optimization_problem.objective_space,
logger=self.logger
)
pareto_frontier = ParetoFrontier(optimization_problem=optimization_problem)
if utility_function_type_name == ConfidenceBoundUtilityFunction.__name__:
utility_function_config = Point(utility_function_name="upper_confidence_bound_on_improvement", alpha=0.05)
utility_function = ConfidenceBoundUtilityFunction(
function_config=utility_function_config,
surrogate_model=model,
minimize=optimization_problem.objectives[0].minimize,
logger=self.logger
)
elif utility_function_type_name == MultiObjectiveProbabilityOfImprovementUtilityFunction.__name__:
utility_function_config = multi_objective_probability_of_improvement_utility_function_config_store.default
utility_function = MultiObjectiveProbabilityOfImprovementUtilityFunction(
function_config=utility_function_config,
pareto_frontier=pareto_frontier,
surrogate_model=model,
logger=self.logger
)
else:
assert False
if utility_function_optimizer_type_name == RandomSearchOptimizer.__name__:
utility_function_optimizer_config = random_search_optimizer_config_store.default
elif utility_function_optimizer_type_name == GlowWormSwarmOptimizer.__name__:
utility_function_optimizer_config = glow_worm_swarm_optimizer_config_store.default
elif utility_function_optimizer_type_name == RandomNearIncumbentOptimizer.__name__:
utility_function_optimizer_config = random_near_incumbent_optimizer_config_store.default
else:
assert False, f"Unknown utility_function_optimizer_type_name: {utility_function_optimizer_type_name}"
utility_function_optimizer = UtilityFunctionOptimizerFactory.create_utility_function_optimizer(
utility_function=utility_function,
optimizer_type_name=utility_function_optimizer_type_name,
optimizer_config=utility_function_optimizer_config,
optimization_problem=optimization_problem,
pareto_frontier=pareto_frontier,
logger=self.logger
)
assert not model.trained
self.logger.info("Asserting the optimizer is throwing appropriate exceptions.")
num_failed_suggestions = 3
for i in range(num_failed_suggestions):
with pytest.raises(expected_exception=UnableToProduceGuidedSuggestionException):
utility_function_optimizer.suggest()
self.logger.info(f"[{i+1}/{num_failed_suggestions}] worked.")
# Now let's train the model a bit and make sure that we can produce the suggestions afterwards
#
random_params_df = optimization_problem.parameter_space.random_dataframe(1000)
objectives_df = objective_function.evaluate_dataframe(random_params_df)
features_df = optimization_problem.construct_feature_dataframe(parameters_df=random_params_df)
self.logger.info("Training the model")
model.fit(features_df=features_df, targets_df=objectives_df, iteration_number=1000)
assert model.trained
self.logger.info("Model trained.")
self.logger.info("Updating pareto.")
pareto_frontier.update_pareto(objectives_df=objectives_df, parameters_df=random_params_df)
self.logger.info("Pareto updated.")
self.logger.info("Asserting suggestions work.")
num_successful_suggestions = 3
for i in range(num_successful_suggestions):
suggestion = utility_function_optimizer.suggest()
assert suggestion in optimization_problem.parameter_space
self.logger.info(f"[{i+1}/{num_successful_suggestions}] successfully produced suggestion: {suggestion}")
self.logger.info(f"Done testing. Objective function: {objective_function_config_name}, utility_function: {utility_function_optimizer_type_name}, optimizer: {utility_function_optimizer_type_name}.")
def test_default_config(self, objective_function_config_name):
objective_function_config = objective_function_config_store.get_config_by_name(
objective_function_config_name)
objective_function = ObjectiveFunctionFactory.create_objective_function(
objective_function_config)
rf_config = homogeneous_random_forest_config_store.default
multi_objective_rf = MultiObjectiveHomogeneousRandomForest(
model_config=rf_config,
input_space=objective_function.parameter_space,
output_space=objective_function.output_space,
logger=self.logger)
num_training_samples = 1000
num_testing_samples = 100
train_params_df = objective_function.parameter_space.random_dataframe(
num_samples=num_training_samples)
train_objectives_df = objective_function.evaluate_dataframe(
train_params_df)
test_params_df = objective_function.parameter_space.random_dataframe(
num_samples=num_testing_samples)
test_objectives_df = objective_function.evaluate_dataframe(
test_params_df)
multi_objective_rf.fit(features_df=train_params_df,
targets_df=train_objectives_df,
iteration_number=num_training_samples)
multi_objective_predictions = multi_objective_rf.predict(
features_df=train_params_df, include_only_valid_rows=True)
# TRAINING DATA
#
print(
"------------------------------------------------------------------------------------"
)
print(
"--------------------------------------- TRAIN --------------------------------------"
)
print(
"------------------------------------------------------------------------------------"
)
training_gof = multi_objective_rf.compute_goodness_of_fit(
features_df=train_params_df,
targets_df=train_objectives_df,
data_set_type=DataSetType.TRAIN)
for objective_name in objective_function.output_space.dimension_names:
print(
"------------------------------------------------------------------------------------"
)
print(objective_name)
print(training_gof[objective_name].to_json(indent=2))
# TESTING DATA
print(
"------------------------------------------------------------------------------------"
)
print(
"--------------------------------------- TEST ---------------------------------------"
)
print(
"------------------------------------------------------------------------------------"
)
testing_gof = multi_objective_rf.compute_goodness_of_fit(
features_df=test_params_df,
targets_df=test_objectives_df,
data_set_type=DataSetType.TEST_KNOWN_RANDOM)
for objective_name in objective_function.output_space.dimension_names:
print(
"------------------------------------------------------------------------------------"
)
print(objective_name)
print(testing_gof[objective_name].to_json(indent=2))
def test_hierarchical_quadratic_cold_start_random_configs(
self, restart_num, use_remote_optimizer):
objective_function_config = objective_function_config_store.get_config_by_name(
'three_level_quadratic')
objective_function = ObjectiveFunctionFactory.create_objective_function(
objective_function_config=objective_function_config)
output_space = SimpleHypergrid(name="output",
dimensions=[
ContinuousDimension(name='y',
min=-math.inf,
max=math.inf)
])
optimization_problem = OptimizationProblem(
parameter_space=objective_function.parameter_space,
objective_space=output_space,
objectives=[Objective(name='y', minimize=True)])
random_state = random.Random()
# Let's set up random seeds so that we can easily repeat failed experiments
#
random_state.seed(restart_num)
bayesian_optimizer_config_store.parameter_space.random_state = random_state
objective_function.parameter_space.random_state = random_state
optimizer_config = bayesian_optimizer_config_store.parameter_space.random(
)
# We can make this test more useful as a Unit Test by restricting its duration.
#
optimizer_config.min_samples_required_for_guided_design_of_experiments = 20
if optimizer_config.surrogate_model_implementation == HomogeneousRandomForestRegressionModel.__name__:
random_forest_config = optimizer_config.homogeneous_random_forest_regression_model_config
random_forest_config.n_estimators = min(
random_forest_config.n_estimators, 5)
decision_tree_config = random_forest_config.decision_tree_regression_model_config
decision_tree_config.min_samples_to_fit = 10
decision_tree_config.n_new_samples_before_refit = 10
if optimizer_config.experiment_designer_config.numeric_optimizer_implementation == GlowWormSwarmOptimizer.__name__:
optimizer_config.experiment_designer_config.glow_worm_swarm_optimizer_config.num_iterations = 5
if optimizer_config.experiment_designer_config.numeric_optimizer_implementation == RandomSearchOptimizer.__name__:
optimizer_config.experiment_designer_config.random_search_optimizer_config.num_samples_per_iteration = min(
optimizer_config.experiment_designer_config.
random_search_optimizer_config.num_samples_per_iteration, 1000)
print(
f"[Restart: {restart_num}] Creating a BayesianOptimimizer with the following config: "
)
print(optimizer_config.to_json(indent=2))
if not use_remote_optimizer:
bayesian_optimizer = self.bayesian_optimizer_factory.create_local_optimizer(
optimization_problem=optimization_problem,
optimizer_config=optimizer_config)
else:
bayesian_optimizer = self.bayesian_optimizer_factory.create_remote_optimizer(
optimization_problem=optimization_problem,
optimizer_config=optimizer_config)
num_guided_samples = optimizer_config.min_samples_required_for_guided_design_of_experiments + 5
for i in range(num_guided_samples):
suggested_params = bayesian_optimizer.suggest()
y = objective_function.evaluate_point(suggested_params)
print(
f"[Restart: {restart_num}][Sample: {i}/{num_guided_samples}] {suggested_params}, y: {y}"
)
input_values_df = pd.DataFrame({
param_name: [param_value]
for param_name, param_value in suggested_params
})
target_values_df = y.to_dataframe()
bayesian_optimizer.register(
parameter_values_pandas_frame=input_values_df,
target_values_pandas_frame=target_values_df)
best_config_point, best_objective = bayesian_optimizer.optimum(
optimum_definition=OptimumDefinition.BEST_OBSERVATION)
print(
f"[Restart: {restart_num}] Optimum config: {best_config_point}, optimum objective: {best_objective}"
)
self.validate_optima(optimizer=bayesian_optimizer)
if not use_remote_optimizer:
# Test if pickling works
#
pickled_optimizer = pickle.dumps(bayesian_optimizer)
unpickled_optimizer = pickle.loads(pickled_optimizer)
assert unpickled_optimizer.suggest(
) in bayesian_optimizer.optimization_problem.parameter_space
def test_multi_objective_optimization(self,
objective_function_implementation,
minimize, num_output_dimensions,
num_points):
if objective_function_implementation == Hypersphere:
hypersphere_radius = 10
objective_function_config = Point(
implementation=Hypersphere.__name__,
hypersphere_config=Point(num_objectives=num_output_dimensions,
minimize=minimize,
radius=hypersphere_radius))
else:
objective_function_config = Point(
implementation=MultiObjectiveNestedPolynomialObjective.
__name__,
multi_objective_nested_polynomial_config=Point(
num_objectives=num_output_dimensions,
objective_function_implementation=NestedPolynomialObjective
.__name__,
nested_polynomial_objective_config=Point(
num_nested_polynomials=2,
nested_function_implementation=PolynomialObjective.
__name__,
polynomial_objective_config=Point(
seed=17,
input_domain_dimension=2,
input_domain_min=-2**10,
input_domain_width=2**11,
max_degree=2,
include_mixed_coefficients=True,
percent_coefficients_zeroed=0.0,
coefficient_domain_min=-10.0,
coefficient_domain_width=9.0,
include_noise=False,
noise_coefficient_of_variation=0.0))))
objective_function = ObjectiveFunctionFactory.create_objective_function(
objective_function_config)
optimization_problem = objective_function.default_optimization_problem
if objective_function_implementation == MultiObjectiveNestedPolynomialObjective:
# We need to modify the default optimization problem to respect the "minimize" argument.
#
objectives = []
for i, default_objective in enumerate(
optimization_problem.objectives):
if minimize == "all":
minimize = True
elif minimize == "some":
minimize = ((i % 2) == 0)
else:
minimize = False
new_objective = Objective(name=default_objective.name,
minimize=minimize)
objectives.append(new_objective)
optimization_problem.objectives = objectives
optimizer_config = bayesian_optimizer_config_store.get_config_by_name(
"default_multi_objective_optimizer_config")
self.logger.info(optimizer_config)
optimizer = self.bayesian_optimizer_factory.create_local_optimizer(
optimization_problem=optimization_problem,
optimizer_config=optimizer_config)
assert optimizer.optimizer_config.surrogate_model_implementation == MultiObjectiveHomogeneousRandomForest.__name__
# We can now go through the optimization loop, at each point validating that:
# 1) The suggested point is valid.
# 2) The volume of the pareto frontier is monotonically increasing.
lower_bounds_on_pareto_volume = []
upper_bounds_on_pareto_volume = []
for i in range(num_points):
suggestion = optimizer.suggest()
assert suggestion in optimization_problem.parameter_space
objectives = objective_function.evaluate_point(suggestion)
optimizer.register(
parameter_values_pandas_frame=suggestion.to_dataframe(),
target_values_pandas_frame=objectives.to_dataframe())
if i > 10:
pareto_volume_estimator = optimizer.pareto_frontier.approximate_pareto_volume(
num_samples=1000000)
lower_bound, upper_bound = pareto_volume_estimator.get_two_sided_confidence_interval_on_pareto_volume(
alpha=0.95)
lower_bounds_on_pareto_volume.append(lower_bound)
upper_bounds_on_pareto_volume.append(upper_bound)
pareto_volumes_over_time_df = pd.DataFrame({
'lower_bounds':
lower_bounds_on_pareto_volume,
'upper_bounds':
upper_bounds_on_pareto_volume
})
# If we had precise volume measurements, we would want to ascertain that the volume of the pareto frontier is monotonically increasing.
# However, we only have estimates so we cannot assert that they are monotonic. But we can assert that they are approximately monotonic:
# we can make sure that any dip between consecutive volumes is smaller than some small number. Actually we can make sure that there
# is no drift, by looking over larger windows too.
#
threshold = -0.1
for periods in [1, 10, 20]:
min_pct_increase_in_lower_bound = pareto_volumes_over_time_df[
'lower_bounds'].pct_change(periods=periods).fillna(0).min()
if not (min_pct_increase_in_lower_bound > threshold):
print(pareto_volumes_over_time_df)
assert min_pct_increase_in_lower_bound > threshold
min_pct_increase_in_upper_bound = pareto_volumes_over_time_df[
'upper_bounds'].pct_change(periods=periods).fillna(0).min()
if not (min_pct_increase_in_upper_bound > threshold):
print(pareto_volumes_over_time_df)
assert min_pct_increase_in_upper_bound > threshold
