def report_erps(self, evoked: mne.Evoked, erp_name: str):
# set report and condition name
name_info = erp_name.split('_')
report_name = name_info[-1]
report_name = self.folder_tracker(['erp', self.header],
f'report_{report_name}.h5')
cnd_name = '_'.join(map(str, name_info[:-1]))
# check whether report exists
if os.path.isfile(report_name):
with mne.open_report(report_name) as report:
# if section exists delete it first
report.remove(title=cnd_name)
report.add_evokeds(evokeds=evoked,
titles=cnd_name,
n_time_points=21)
report.save(report_name.rsplit(".", 1)[0] + '.html',
overwrite=True)
else:
report = mne.Report(title='Single subject evoked overview')
report.add_evokeds(evokeds=evoked,
titles=cnd_name,
n_time_points=21)
report.save(report_name)
report.save(report_name.rsplit(".", 1)[0] + '.html')
ics = len(fig_numbers) - 5
for fig in range(1, 1 + ics):
globals()['ic' + str(fig)] = pyplot.figure(fig + 3) # because we have 3 other plots before ICA plots
freq_after = pyplot.figure(len(fig_numbers))
all_comps = pyplot.figure(len(fig_numbers) - 1)
path_report = data_deriv_dir / os.path.join('sub-' + str(subjects[i]) + '/', 'ses-' + str(sessions[i]) + '/',
'meg/')
report = mne.Report(verbose=True)
report.parse_folder(path_report, pattern='*.fif', render_bem=False)
report.save(str(os.path.join(path_report, 'report.h5')), overwrite=True, open_browser=False)
with mne.open_report(str(os.path.join(path_report, 'report.h5'))) as report:
report.add_figs_to_section(freq_before,
section='Power Spectrum Density',
captions='Before filtering',
replace=True)
report.save(str(os.path.join(path_report, 'report.h5')), overwrite=True)
with mne.open_report(str(os.path.join(path_report, 'report.h5'))) as report:
report.add_figs_to_section(freq_after,
section='Power Spectrum Density',
captions='After filtering',
replace=True)
report.save(str(os.path.join(path_report, 'report.h5')), overwrite=True)
with mne.open_report(str(os.path.join(path_report, 'report.h5'))) as report:
report.add_figs_to_section(bad_ch,
