def delete_sample(sample_id):
"""
Delete sample, required admin role.
:param sample_id: id of the sample
:type sample_id: int
:raises SampleNotFoundException: when sample id is not found
:return: form to edit sample
:rtype: dict
"""
from run import config
sample = Sample.query.filter(Sample.id == sample_id).first()
if sample is not None:
# Process or render form
form = DeleteSampleForm(request.form)
if form.validate_on_submit():
# Delete all files (sample, media info & additional files
basedir = os.path.join(config.get('SAMPLE_REPOSITORY', ''),
'TestFiles')
os.remove(os.path.join(basedir, 'media', sample.sha + '.xml'))
for extra in sample.extra_files:
os.remove(os.path.join(basedir, 'extra', extra.filename))
os.remove(os.path.join(basedir, sample.filename))
g.db.delete(sample)
g.db.commit()
g.log.warning(f'sample with id: {sample_id} deleted')
return redirect(url_for('.index'))
return {'sample': sample, 'form': form}
raise SampleNotFoundException(
'Sample with id {id} not found'.format(id=sample_id))
def delete_sample(sample_id):
from run import config
sample = Sample.query.filter(Sample.id == sample_id).first()
if sample is not None:
# Process or render form
form = DeleteSampleForm(request.form)
if form.validate_on_submit():
# Delete all files (sample, media info & additional files
basedir = os.path.join(config.get('SAMPLE_REPOSITORY', ''),
'TestFiles')
os.remove(os.path.join(basedir, 'media', sample.sha + '.xml'))
for extra in sample.extra_files:
os.remove(os.path.join(basedir, 'extra', extra.filename))
os.remove(os.path.join(basedir, sample.filename))
g.db.delete(sample)
g.db.commit()
return redirect(url_for('.index'))
return {'sample': sample, 'form': form}
raise SampleNotFoundException('Sample with id %s not found' % sample_id)
def delete_sample(sample_id):
from run import config
sample = Sample.query.filter(Sample.id == sample_id).first()
if sample is not None:
# Process or render form
form = DeleteSampleForm(request.form)
if form.validate_on_submit():
# Delete all files (sample, media info & additional files
basedir = os.path.join(config.get('SAMPLE_REPOSITORY', ''), 'TestFiles')
os.remove(os.path.join(basedir, 'media', sample.sha + '.xml'))
for extra in sample.extra_files:
os.remove(os.path.join(basedir, 'extra', extra.filename))
os.remove(os.path.join(basedir, sample.filename))
g.db.delete(sample)
g.db.commit()
return redirect(url_for('.index'))
return {
'sample': sample,
'form': form
}
raise SampleNotFoundException('Sample with id {id} not found'.format(id=sample_id))