def __init__(self, config):
super(SeqSupervisedNetwork, self).__init__()
self.base_path = config['base_path']
self.early_stopping = config['early_stopping']
self.lr = config.get('meta_lr', 1e-3)
self.weight_decay = config.get('meta_weight_decay', 0.0)
if 'seq' in config['learner_model']:
self.learner = RNNSequenceModel(config['learner_params'])
elif 'mlp' in config['learner_model']:
self.learner = MLPModel(config['learner_params'])
elif 'bert' in config['learner_model']:
self.learner = BERTSequenceModel(config['learner_params'])
self.dropout = nn.Dropout(config['learner_params']['dropout_ratio'])
self.classifier = nn.Linear(
config['learner_params']['embed_dim'],
config['learner_params']['num_outputs']['ner'])
self.num_outputs = config['learner_params']['num_outputs']
self.vectors = config.get('vectors', 'glove')
if self.vectors == 'elmo':
self.elmo = Elmo(
options_file=
"https://s3-us-west-2.amazonaws.com/allennlp/models/elmo/2x4096_512_2048cnn_2xhighway_5.5B/elmo_2x4096_512_2048cnn_2xhighway_5.5B_options.json",
weight_file=
"https://s3-us-west-2.amazonaws.com/allennlp/models/elmo/2x4096_512_2048cnn_2xhighway_5.5B/elmo_2x4096_512_2048cnn_2xhighway_5.5B_weights.hdf5",
num_output_representations=1,
dropout=0,
requires_grad=False)
elif self.vectors == 'glove':
self.glove = torchtext.vocab.GloVe(name='840B', dim=300)
elif self.vectors == 'bert':
self.bert_tokenizer = BertTokenizer.from_pretrained(
'bert-base-cased')
self.loss_fn = {}
for task in config['learner_params']['num_outputs']:
self.loss_fn[task] = nn.CrossEntropyLoss(ignore_index=-1)
if config.get('trained_learner', False):
self.learner.load_state_dict(
torch.load(
os.path.join(self.base_path, 'saved_models',
config['trained_learner'])))
self.classifier.load_state_dict(
torch.load(
os.path.join(self.base_path, 'saved_models',
config['trained_classifier'])))
logger.info('Loaded trained learner model {}'.format(
config['trained_learner']))
self.device = torch.device(config.get('device', 'cpu'))
self.to(self.device)
if self.vectors == 'elmo':
self.elmo.to(self.device)
self.initialize_optimizer_scheduler()
def __init__(self, config):
super(SeqMetaModel, self).__init__()
self.base_path = config['base_path']
self.learner_lr = config.get('learner_lr', 1e-3)
self.output_lr = config.get('output_lr', 0.1)
if 'seq' in config['learner_model']:
self.learner = RNNSequenceModel(config['learner_params'])
elif 'mlp' in config['learner_model']:
self.learner = MLPModel(config['learner_params'])
elif 'bert' in config['learner_model']:
self.learner = BERTSequenceModel(config['learner_params'])
self.proto_maml = config.get('proto_maml', False)
self.fomaml = config.get('fomaml', False)
self.vectors = config.get('vectors', 'glove')
if self.vectors == 'elmo':
self.elmo = Elmo(
options_file=
"https://s3-us-west-2.amazonaws.com/allennlp/models/elmo/2x4096_512_2048cnn_2xhighway_5.5B/elmo_2x4096_512_2048cnn_2xhighway_5.5B_options.json",
weight_file=
"https://s3-us-west-2.amazonaws.com/allennlp/models/elmo/2x4096_512_2048cnn_2xhighway_5.5B/elmo_2x4096_512_2048cnn_2xhighway_5.5B_weights.hdf5",
num_output_representations=1,
dropout=0,
requires_grad=False)
elif self.vectors == 'glove':
self.glove = torchtext.vocab.GloVe(name='840B', dim=300)
elif self.vectors == 'bert':
self.bert_tokenizer = BertTokenizer.from_pretrained(
'bert-base-cased')
self.learner_loss = {}
for task in config['learner_params']['num_outputs']:
self.learner_loss[task] = nn.CrossEntropyLoss(ignore_index=-1)
self.output_layer_weight = None
self.output_layer_bias = None
if config.get('trained_learner', False):
self.learner.load_state_dict(
torch.load(
os.path.join(self.base_path, 'saved_models',
config['trained_learner'])))
logger.info('Loaded trained learner model {}'.format(
config['trained_learner']))
self.device = torch.device(config.get('device', 'cpu'))
self.to(self.device)
if self.proto_maml:
logger.info(
'Initialization of output layer weights as per prototypical networks turned on'
)
params = [p for p in self.learner.parameters() if p.requires_grad]
self.learner_optimizer = optim.SGD(params, lr=self.learner_lr)
def __init__(self, config):
self.vectors = config.get('vectors', 'elmo')
self.device = torch.device(config.get('device', 'cpu'))
if self.vectors == 'elmo':
self.elmo = Elmo(
options_file=
"https://s3-us-west-2.amazonaws.com/allennlp/models/elmo/2x4096_512_2048cnn_2xhighway_5.5B/elmo_2x4096_512_2048cnn_2xhighway_5.5B_options.json",
weight_file=
"https://s3-us-west-2.amazonaws.com/allennlp/models/elmo/2x4096_512_2048cnn_2xhighway_5.5B/elmo_2x4096_512_2048cnn_2xhighway_5.5B_weights.hdf5",
num_output_representations=1,
dropout=0,
requires_grad=False)
self.elmo.to(self.device)
elif self.vectors == 'glove':
self.glove = torchtext.vocab.GloVe(name='840B', dim=300)
elif self.vectors == 'bert':
self.bert_tokenizer = BertTokenizer.from_pretrained(
'bert-base-cased')
self.bert = BERTSequenceModel(config['learner_params'])
self.bert.to(self.device)
logger.info('Nearest neighbor classifier instantiated')
class SeqPrototypicalNetwork(nn.Module):
def __init__(self, config):
super(SeqPrototypicalNetwork, self).__init__()
self.base_path = config['base_path']
self.early_stopping = config['early_stopping']
self.lr = config.get('meta_lr', 1e-3)
self.weight_decay = config.get('meta_weight_decay', 0.0)
if 'seq' in config['learner_model']:
self.learner = RNNSequenceModel(config['learner_params'])
elif 'mlp' in config['learner_model']:
self.learner = MLPModel(config['learner_params'])
elif 'bert' in config['learner_model']:
self.learner = BERTSequenceModel(config['learner_params'])
self.num_outputs = config['learner_params']['num_outputs']
self.vectors = config.get('vectors', 'glove')
if self.vectors == 'elmo':
self.elmo = Elmo(options_file="https://s3-us-west-2.amazonaws.com/allennlp/models/elmo/2x4096_512_2048cnn_2xhighway_5.5B/elmo_2x4096_512_2048cnn_2xhighway_5.5B_options.json",
weight_file="https://s3-us-west-2.amazonaws.com/allennlp/models/elmo/2x4096_512_2048cnn_2xhighway_5.5B/elmo_2x4096_512_2048cnn_2xhighway_5.5B_weights.hdf5",
num_output_representations=1,
dropout=0,
requires_grad=False)
elif self.vectors == 'glove':
self.glove = torchtext.vocab.GloVe(name='840B', dim=300)
elif self.vectors == 'bert':
self.bert_tokenizer = BertTokenizer.from_pretrained('bert-base-cased')
self.loss_fn = {}
for task in config['learner_params']['num_outputs']:
self.loss_fn[task] = nn.CrossEntropyLoss(ignore_index=-1)
if config.get('trained_learner', False):
self.learner.load_state_dict(torch.load(
os.path.join(self.base_path, 'saved_models', config['trained_learner'])
))
logger.info('Loaded trained learner model {}'.format(config['trained_learner']))
self.device = torch.device(config.get('device', 'cpu'))
self.to(self.device)
if self.vectors == 'elmo':
self.elmo.to(self.device)
self.initialize_optimizer_scheduler()
def initialize_optimizer_scheduler(self):
learner_params = [p for p in self.learner.parameters() if p.requires_grad]
if isinstance(self.learner, BERTSequenceModel):
self.optimizer = AdamW(learner_params, lr=self.lr, weight_decay=self.weight_decay)
self.lr_scheduler = get_constant_schedule_with_warmup(self.optimizer, num_warmup_steps=100)
else:
self.optimizer = optim.Adam(learner_params, lr=self.lr, weight_decay=self.weight_decay)
self.lr_scheduler = optim.lr_scheduler.StepLR(self.optimizer, step_size=500, gamma=0.5)
def vectorize(self, batch_x, batch_len, batch_y):
with torch.no_grad():
if self.vectors == 'elmo':
char_ids = batch_to_ids(batch_x)
char_ids = char_ids.to(self.device)
batch_x = self.elmo(char_ids)['elmo_representations'][0]
elif self.vectors == 'glove':
max_batch_len = max(batch_len)
vec_batch_x = torch.ones((len(batch_x), max_batch_len, 300))
for i, sent in enumerate(batch_x):
sent_emb = self.glove.get_vecs_by_tokens(sent, lower_case_backup=True)
vec_batch_x[i, :len(sent_emb)] = sent_emb
batch_x = vec_batch_x.to(self.device)
elif self.vectors == 'bert':
max_batch_len = max(batch_len) + 2
input_ids = torch.zeros((len(batch_x), max_batch_len)).long()
for i, sent in enumerate(batch_x):
sent_token_ids = self.bert_tokenizer.encode(sent, add_special_tokens=True)
input_ids[i, :len(sent_token_ids)] = torch.tensor(sent_token_ids)
batch_x = input_ids.to(self.device)
batch_len = torch.tensor(batch_len).to(self.device)
batch_y = torch.tensor(batch_y).to(self.device)
return batch_x, batch_len, batch_y
def forward(self, episodes, updates=1, testing=False):
query_losses, query_accuracies, query_precisions, query_recalls, query_f1s = [], [], [], [], []
n_episodes = len(episodes)
for episode_id, episode in enumerate(episodes):
batch_x, batch_len, batch_y = next(iter(episode.support_loader))
batch_x, batch_len, batch_y = self.vectorize(batch_x, batch_len, batch_y)
self.train()
support_repr, support_label = [], []
batch_x_repr = self.learner(batch_x, batch_len)
support_repr.append(batch_x_repr)
support_label.append(batch_y)
prototypes = self._build_prototypes(support_repr, support_label, episode.n_classes)
# Run on query
query_loss = 0.0
all_predictions, all_labels = [], []
for module in self.learner.modules():
if isinstance(module, nn.Dropout):
module.eval()
for n_batch, (batch_x, batch_len, batch_y) in enumerate(episode.query_loader):
batch_x, batch_len, batch_y = self.vectorize(batch_x, batch_len, batch_y)
batch_x_repr = self.learner(batch_x, batch_len)
output = self._normalized_distances(prototypes, batch_x_repr)
output = output.view(output.size()[0] * output.size()[1], -1)
batch_y = batch_y.view(-1)
loss = self.loss_fn[episode.base_task](output, batch_y)
query_loss += loss.item()
if not testing:
self.optimizer.zero_grad()
loss.backward(retain_graph=True)
self.optimizer.step()
self.lr_scheduler.step()
relevant_indices = torch.nonzero(batch_y != -1).view(-1).detach()
all_predictions.extend(make_prediction(output[relevant_indices]).cpu())
all_labels.extend(batch_y[relevant_indices].cpu())
query_loss /= n_batch + 1
# Calculate metrics
accuracy, precision, recall, f1_score = utils.calculate_metrics(all_predictions,
all_labels, binary=False)
logger.info('Episode {}/{}, task {} [query set]: Loss = {:.5f}, accuracy = {:.5f}, precision = {:.5f}, '
'recall = {:.5f}, F1 score = {:.5f}'.format(episode_id + 1, n_episodes, episode.task_id,
query_loss, accuracy, precision, recall, f1_score))
query_losses.append(query_loss)
query_accuracies.append(accuracy)
query_precisions.append(precision)
query_recalls.append(recall)
query_f1s.append(f1_score)
return query_losses, query_accuracies, query_precisions, query_recalls, query_f1s
def _build_prototypes(self, data_repr, data_label, num_outputs):
print (data_repr[0].shape)
n_dim = data_repr[0].shape[2]
data_repr = torch.cat(tuple([x.view(-1, n_dim) for x in data_repr]), dim=0)
data_label = torch.cat(tuple([y.view(-1) for y in data_label]), dim=0)
prototypes = torch.zeros((num_outputs, n_dim), device=self.device)
for c in range(num_outputs):
idx = torch.nonzero(data_label == c).view(-1)
if idx.nelement() != 0:
prototypes[c] = torch.mean(data_repr[idx], dim=0)
return prototypes
def _normalized_distances(self, prototypes, q):
d = torch.stack(
tuple([q.sub(p).pow(2).sum(dim=-1) for p in prototypes]),
dim=-1
)
return d.neg()
class SeqMetaModel(nn.Module):
def __init__(self, config):
super(SeqMetaModel, self).__init__()
self.base_path = config['base_path']
self.learner_lr = config.get('learner_lr', 1e-3)
self.output_lr = config.get('output_lr', 0.1)
if 'seq' in config['learner_model']:
self.learner = RNNSequenceModel(config['learner_params'])
elif 'mlp' in config['learner_model']:
self.learner = MLPModel(config['learner_params'])
elif 'bert' in config['learner_model']:
self.learner = BERTSequenceModel(config['learner_params'])
self.proto_maml = config.get('proto_maml', False)
self.fomaml = config.get('fomaml', False)
self.vectors = config.get('vectors', 'glove')
if self.vectors == 'elmo':
self.elmo = Elmo(options_file="https://s3-us-west-2.amazonaws.com/allennlp/models/elmo/2x4096_512_2048cnn_2xhighway_5.5B/elmo_2x4096_512_2048cnn_2xhighway_5.5B_options.json",
weight_file="https://s3-us-west-2.amazonaws.com/allennlp/models/elmo/2x4096_512_2048cnn_2xhighway_5.5B/elmo_2x4096_512_2048cnn_2xhighway_5.5B_weights.hdf5",
num_output_representations=1,
dropout=0,
requires_grad=False)
elif self.vectors == 'glove':
self.glove = torchtext.vocab.GloVe(name='840B', dim=300)
elif self.vectors == 'bert':
self.bert_tokenizer = BertTokenizer.from_pretrained('bert-base-cased')
self.learner_loss = {}
for task in config['learner_params']['num_outputs']:
self.learner_loss[task] = nn.CrossEntropyLoss(ignore_index=-1)
self.output_layer_weight = None
self.output_layer_bias = None
if config.get('trained_learner', False):
self.learner.load_state_dict(torch.load(
os.path.join(self.base_path, 'saved_models', config['trained_learner'])
))
logger.info('Loaded trained learner model {}'.format(config['trained_learner']))
self.device = torch.device(config.get('device', 'cpu'))
self.to(self.device)
if self.proto_maml:
logger.info('Initialization of output layer weights as per prototypical networks turned on')
params = [p for p in self.learner.parameters() if p.requires_grad]
self.learner_optimizer = optim.SGD(params, lr=self.learner_lr)
def vectorize(self, batch_x, batch_len, batch_y):
with torch.no_grad():
if self.vectors == 'elmo':
char_ids = batch_to_ids(batch_x)
char_ids = char_ids.to(self.device)
batch_x = self.elmo(char_ids)['elmo_representations'][0]
elif self.vectors == 'glove':
max_batch_len = max(batch_len)
vec_batch_x = torch.ones((len(batch_x), max_batch_len, 300))
for i, sent in enumerate(batch_x):
sent_emb = self.glove.get_vecs_by_tokens(sent, lower_case_backup=True)
vec_batch_x[i, :len(sent_emb)] = sent_emb
batch_x = vec_batch_x.to(self.device)
elif self.vectors == 'bert':
max_batch_len = max(batch_len) + 2
input_ids = torch.zeros((len(batch_x), max_batch_len)).long()
for i, sent in enumerate(batch_x):
sent_token_ids = self.bert_tokenizer.encode(sent, add_special_tokens=True)
input_ids[i, :len(sent_token_ids)] = torch.tensor(sent_token_ids)
batch_x = input_ids.to(self.device)
batch_len = torch.tensor(batch_len).to(self.device)
batch_y = torch.tensor(batch_y).to(self.device)
return batch_x, batch_len, batch_y
def forward(self, episodes, updates=1, testing=False):
support_losses = []
query_losses, query_accuracies, query_precisions, query_recalls, query_f1s = [], [], [], [], []
n_episodes = len(episodes)
for episode_id, episode in enumerate(episodes):
self.initialize_output_layer(episode.n_classes)
batch_x, batch_len, batch_y = next(iter(episode.support_loader))
batch_x, batch_len, batch_y = self.vectorize(batch_x, batch_len, batch_y)
if self.proto_maml:
output_repr = self.learner(batch_x, batch_len)
init_weights, init_bias = self._initialize_with_proto_weights(output_repr, batch_y, episode.n_classes)
else:
init_weights, init_bias = 0, 0
with torch.backends.cudnn.flags(enabled=self.fomaml or testing or not isinstance(self.learner, RNNSequenceModel)), \
higher.innerloop_ctx(self.learner, self.learner_optimizer,
copy_initial_weights=False,
track_higher_grads=(not self.fomaml and not testing)) as (flearner, diffopt):
all_predictions, all_labels = [], []
self.train()
flearner.train()
flearner.zero_grad()
for i in range(updates):
output = flearner(batch_x, batch_len)
output = self.output_layer(output, init_weights, init_bias)
output = output.view(output.size()[0] * output.size()[1], -1)
batch_y = batch_y.view(-1)
loss = self.learner_loss[episode.base_task](output, batch_y)
# Update the output layer parameters
output_weight_grad, output_bias_grad = torch.autograd.grad(loss, [self.output_layer_weight, self.output_layer_bias], retain_graph=True)
self.output_layer_weight = self.output_layer_weight - self.output_lr * output_weight_grad
self.output_layer_bias = self.output_layer_bias - self.output_lr * output_bias_grad
# Update the shared parameters
diffopt.step(loss)
relevant_indices = torch.nonzero(batch_y != -1).view(-1).detach()
pred = make_prediction(output[relevant_indices].detach()).cpu()
all_predictions.extend(pred)
all_labels.extend(batch_y[relevant_indices].cpu())
support_loss = loss.item()
accuracy, precision, recall, f1_score = utils.calculate_metrics(all_predictions,
all_labels, binary=False)
logger.info('Episode {}/{}, task {} [support_set]: Loss = {:.5f}, accuracy = {:.5f}, precision = {:.5f}, '
'recall = {:.5f}, F1 score = {:.5f}'.format(episode_id + 1, n_episodes, episode.task_id,
support_loss, accuracy, precision, recall, f1_score))
query_loss = 0.0
all_predictions, all_labels = [], []
# Disable dropout
for module in flearner.modules():
if isinstance(module, nn.Dropout):
module.eval()
for n_batch, (batch_x, batch_len, batch_y) in enumerate(episode.query_loader):
batch_x, batch_len, batch_y = self.vectorize(batch_x, batch_len, batch_y)
output = flearner(batch_x, batch_len)
output = self.output_layer(output, init_weights, init_bias)
output = output.view(output.size()[0] * output.size()[1], -1)
batch_y = batch_y.view(-1)
loss = self.learner_loss[episode.base_task](output, batch_y)
if not testing:
if self.fomaml:
meta_grads = torch.autograd.grad(loss, [p for p in flearner.parameters() if p.requires_grad], retain_graph=self.proto_maml)
else:
meta_grads = torch.autograd.grad(loss, [p for p in flearner.parameters(time=0) if p.requires_grad], retain_graph=self.proto_maml)
if self.proto_maml:
proto_grads = torch.autograd.grad(loss, [p for p in self.learner.parameters() if p.requires_grad])
meta_grads = [mg + pg for (mg, pg) in zip(meta_grads, proto_grads)]
query_loss += loss.item()
relevant_indices = torch.nonzero(batch_y != -1).view(-1).detach()
pred = make_prediction(output[relevant_indices].detach()).cpu()
all_predictions.extend(pred)
all_labels.extend(batch_y[relevant_indices].cpu())
query_loss /= n_batch + 1
accuracy, precision, recall, f1_score = utils.calculate_metrics(all_predictions,
all_labels, binary=False)
logger.info('Episode {}/{}, task {} [query set]: Loss = {:.5f}, accuracy = {:.5f}, precision = {:.5f}, '
'recall = {:.5f}, F1 score = {:.5f}'.format(episode_id + 1, n_episodes, episode.task_id,
query_loss, accuracy, precision, recall, f1_score))
support_losses.append(support_loss)
query_losses.append(query_loss)
query_accuracies.append(accuracy)
query_precisions.append(precision)
query_recalls.append(recall)
query_f1s.append(f1_score)
if not testing:
for param, meta_grad in zip([p for p in self.learner.parameters() if p.requires_grad], meta_grads):
if param.grad is not None:
param.grad += meta_grad.detach()
else:
param.grad = meta_grad.detach()
# Average the accumulated gradients
if not testing:
for param in self.learner.parameters():
if param.requires_grad:
param.grad /= len(query_accuracies)
if testing:
return support_losses, query_accuracies, query_precisions, query_recalls, query_f1s
else:
return query_losses, query_accuracies, query_precisions, query_recalls, query_f1s
def initialize_output_layer(self, n_classes):
if isinstance(self.learner, RNNSequenceModel):
stdv = 1.0 / math.sqrt(self.learner.hidden_size // 4)
self.output_layer_weight = -2 * stdv * torch.rand((n_classes, self.learner.hidden_size // 4), device=self.device) + stdv
self.output_layer_bias = -2 * stdv * torch.rand(n_classes, device=self.device) + stdv
elif isinstance(self.learner, MLPModel) or isinstance(self.learner, BERTSequenceModel):
stdv = 1.0 / math.sqrt(self.learner.hidden_size)
self.output_layer_weight = -2 * stdv * torch.rand((n_classes, self.learner.hidden_size),
device=self.device) + stdv
self.output_layer_bias = -2 * stdv * torch.rand(n_classes, device=self.device) + stdv
self.output_layer_weight.requires_grad = True
self.output_layer_bias.requires_grad = True
def _initialize_with_proto_weights(self, support_repr, support_label, n_classes):
prototypes = self._build_prototypes(support_repr, support_label, n_classes)
weight = 2 * prototypes
bias = -torch.norm(prototypes, dim=1)**2
self.output_layer_weight = torch.zeros_like(weight, requires_grad=True)
self.output_layer_bias = torch.zeros_like(bias, requires_grad=True)
return weight, bias
def _build_prototypes(self, data_repr, data_label, num_outputs):
n_dim = data_repr.shape[2]
data_repr = data_repr.view(-1, n_dim)
data_label = data_label.view(-1)
prototypes = torch.zeros((num_outputs, n_dim), device=self.device)
for c in range(num_outputs):
idx = torch.nonzero(data_label == c).view(-1)
if idx.nelement() != 0:
prototypes[c] = torch.mean(data_repr[idx], dim=0)
return prototypes
def output_layer(self, input, weight, bias):
return F.linear(input, self.output_layer_weight + weight, self.output_layer_bias + bias)
class NearestNeighborClassifier():
def __init__(self, config):
self.vectors = config.get('vectors', 'elmo')
self.device = torch.device(config.get('device', 'cpu'))
if self.vectors == 'elmo':
self.elmo = Elmo(
options_file=
"https://s3-us-west-2.amazonaws.com/allennlp/models/elmo/2x4096_512_2048cnn_2xhighway_5.5B/elmo_2x4096_512_2048cnn_2xhighway_5.5B_options.json",
weight_file=
"https://s3-us-west-2.amazonaws.com/allennlp/models/elmo/2x4096_512_2048cnn_2xhighway_5.5B/elmo_2x4096_512_2048cnn_2xhighway_5.5B_weights.hdf5",
num_output_representations=1,
dropout=0,
requires_grad=False)
self.elmo.to(self.device)
elif self.vectors == 'glove':
self.glove = torchtext.vocab.GloVe(name='840B', dim=300)
elif self.vectors == 'bert':
self.bert_tokenizer = BertTokenizer.from_pretrained(
'bert-base-cased')
self.bert = BERTSequenceModel(config['learner_params'])
self.bert.to(self.device)
logger.info('Nearest neighbor classifier instantiated')
def vectorize(self, batch_x, batch_len, batch_y):
with torch.no_grad():
if self.vectors == 'elmo':
char_ids = batch_to_ids(batch_x)
char_ids = char_ids.to(self.device)
batch_x = self.elmo(char_ids)['elmo_representations'][0]
elif self.vectors == 'glove':
max_batch_len = max(batch_len)
vec_batch_x = torch.ones((len(batch_x), max_batch_len, 300))
for i, sent in enumerate(batch_x):
sent_emb = self.glove.get_vecs_by_tokens(
sent, lower_case_backup=True)
vec_batch_x[i, :len(sent_emb)] = sent_emb
batch_x = vec_batch_x.to(self.device)
elif self.vectors == 'bert':
max_batch_len = max(batch_len) + 2
input_ids = torch.zeros((len(batch_x), max_batch_len)).long()
for i, sent in enumerate(batch_x):
sent_token_ids = self.bert_tokenizer.encode(
sent, add_special_tokens=True)
input_ids[i, :len(sent_token_ids)] = torch.tensor(
sent_token_ids)
batch_x = input_ids.to(self.device)
batch_x = self.bert(batch_x, max_batch_len)
batch_len = torch.tensor(batch_len).to(self.device)
batch_y = torch.tensor(batch_y).to(self.device)
return batch_x, batch_len, batch_y
def training(self, train_episodes, val_episodes):
return 0
def testing(self, test_episodes, label_map):
self.bert.load_state_dict(
torch.load(
'MetaLearningForNER/saved_models/SupervisedLearner-stable.h5'))
map_to_label = {v: k for k, v in label_map.items()}
# episode_accuracies, episode_precisions, episode_recalls, episode_f1s = [], [], [], []
all_true_labels = []
all_predictions = []
for episode_id, episode in enumerate(tqdm(test_episodes)):
batch_x, batch_len, batch_y = next(iter(episode.support_loader))
support_repr, _, support_labels = self.vectorize(
batch_x, batch_len, batch_y)
support_repr = support_repr.reshape(
support_repr.shape[0] * support_repr.shape[1], -1)
support_labels = support_labels.view(-1)
support_repr = support_repr[support_labels != -1].cpu().numpy()
support_labels = support_labels[support_labels != -1].cpu().numpy()
batch_x, batch_len, batch_y = next(iter(episode.query_loader))
query_repr, _, true_labels = self.vectorize(
batch_x, batch_len, batch_y)
query_bs, query_seqlen = query_repr.shape[0], query_repr.shape[1]
query_repr = query_repr.reshape(
query_repr.shape[0] * query_repr.shape[1], -1)
true_labels = true_labels.view(-1)
# query_repr = query_repr[true_labels != -1].cpu().numpy()
query_repr = query_repr.cpu().numpy()
# true_labels = true_labels[true_labels != -1].cpu().numpy()
true_labels = true_labels.cpu().numpy()
dist = cdist(query_repr, support_repr, metric='cosine')
nearest_neighbor = np.argmin(dist, axis=1)
predictions = support_labels[nearest_neighbor]
true_labels = true_labels.reshape(query_bs, query_seqlen)
predictions = predictions.reshape(query_bs, query_seqlen)
seq_true_labels, seq_predictions = [], []
for i in range(len(true_labels)):
true_i = true_labels[i]
pred_i = predictions[i]
seq_predictions.append(
[map_to_label[val] for val in pred_i[true_i != -1]])
seq_true_labels.append(
[map_to_label[val] for val in true_i[true_i != -1]])
all_predictions.extend(seq_predictions)
all_true_labels.extend(seq_true_labels)
accuracy = accuracy_score(seq_true_labels, seq_predictions)
precision = precision_score(seq_true_labels, seq_predictions)
recall = recall_score(seq_true_labels, seq_predictions)
f1 = f1_score(seq_true_labels, seq_predictions)
# logger.info('Episode {}/{}, task {} [query set]: Accuracy = {:.5f}, precision = {:.5f}, '
# 'recall = {:.5f}, F1 score = {:.5f}'.format(episode_id + 1, len(test_episodes), episode.task_id,
# accuracy, precision, recall, f1))
# episode_accuracies.append(accuracy)
# episode_precisions.append(precision)
# episode_recalls.append(recall)
# episode_f1s.append(f1_score)
accuracy = accuracy_score(all_true_labels, all_predictions)
precision = precision_score(all_true_labels, all_predictions)
recall = recall_score(all_true_labels, all_predictions)
f1 = f1_score(all_true_labels, all_predictions)
logger.info(
'Avg meta-testing metrics: Accuracy = {:.5f}, precision = {:.5f}, recall = {:.5f}, '
'F1 score = {:.5f}'.format(accuracy, precision, recall, f1))
return f1
class SeqSupervisedNetwork(nn.Module):
def __init__(self, config):
super(SeqSupervisedNetwork, self).__init__()
self.base_path = config['base_path']
self.early_stopping = config['early_stopping']
self.lr = config.get('meta_lr', 1e-3)
self.weight_decay = config.get('meta_weight_decay', 0.0)
if 'seq' in config['learner_model']:
self.learner = RNNSequenceModel(config['learner_params'])
elif 'mlp' in config['learner_model']:
self.learner = MLPModel(config['learner_params'])
elif 'bert' in config['learner_model']:
self.learner = BERTSequenceModel(config['learner_params'])
self.dropout = nn.Dropout(config['learner_params']['dropout_ratio'])
self.classifier = nn.Linear(
config['learner_params']['embed_dim'],
config['learner_params']['num_outputs']['ner'])
self.num_outputs = config['learner_params']['num_outputs']
self.vectors = config.get('vectors', 'glove')
if self.vectors == 'elmo':
self.elmo = Elmo(
options_file=
"https://s3-us-west-2.amazonaws.com/allennlp/models/elmo/2x4096_512_2048cnn_2xhighway_5.5B/elmo_2x4096_512_2048cnn_2xhighway_5.5B_options.json",
weight_file=
"https://s3-us-west-2.amazonaws.com/allennlp/models/elmo/2x4096_512_2048cnn_2xhighway_5.5B/elmo_2x4096_512_2048cnn_2xhighway_5.5B_weights.hdf5",
num_output_representations=1,
dropout=0,
requires_grad=False)
elif self.vectors == 'glove':
self.glove = torchtext.vocab.GloVe(name='840B', dim=300)
elif self.vectors == 'bert':
self.bert_tokenizer = BertTokenizer.from_pretrained(
'bert-base-cased')
self.loss_fn = {}
for task in config['learner_params']['num_outputs']:
self.loss_fn[task] = nn.CrossEntropyLoss(ignore_index=-1)
if config.get('trained_learner', False):
self.learner.load_state_dict(
torch.load(
os.path.join(self.base_path, 'saved_models',
config['trained_learner'])))
self.classifier.load_state_dict(
torch.load(
os.path.join(self.base_path, 'saved_models',
config['trained_classifier'])))
logger.info('Loaded trained learner model {}'.format(
config['trained_learner']))
self.device = torch.device(config.get('device', 'cpu'))
self.to(self.device)
if self.vectors == 'elmo':
self.elmo.to(self.device)
self.initialize_optimizer_scheduler()
def initialize_optimizer_scheduler(self):
learner_params = [
p for p in self.learner.parameters() if p.requires_grad
]
learner_params += self.dropout.parameters()
learner_params += self.classifier.parameters()
if isinstance(self.learner, BERTSequenceModel):
self.optimizer = AdamW(learner_params,
lr=self.lr,
weight_decay=self.weight_decay)
self.lr_scheduler = get_constant_schedule_with_warmup(
self.optimizer, num_warmup_steps=100)
else:
self.optimizer = optim.Adam(learner_params,
lr=self.lr,
weight_decay=self.weight_decay)
self.lr_scheduler = optim.lr_scheduler.StepLR(self.optimizer,
step_size=500,
gamma=0.5)
def vectorize(self, batch_x, batch_len, batch_y):
with torch.no_grad():
if self.vectors == 'elmo':
char_ids = batch_to_ids(batch_x)
char_ids = char_ids.to(self.device)
batch_x = self.elmo(char_ids)['elmo_representations'][0]
elif self.vectors == 'glove':
max_batch_len = max(batch_len)
vec_batch_x = torch.ones((len(batch_x), max_batch_len, 300))
for i, sent in enumerate(batch_x):
sent_emb = self.glove.get_vecs_by_tokens(
sent, lower_case_backup=True)
vec_batch_x[i, :len(sent_emb)] = sent_emb
batch_x = vec_batch_x.to(self.device)
elif self.vectors == 'bert':
max_batch_len = max(batch_len) + 2
input_ids = torch.zeros((len(batch_x), max_batch_len)).long()
for i, sent in enumerate(batch_x):
sent_token_ids = self.bert_tokenizer.encode(
sent, add_special_tokens=True)
input_ids[i, :len(sent_token_ids)] = torch.tensor(
sent_token_ids)
batch_x = input_ids.to(self.device)
batch_len = torch.tensor(batch_len).to(self.device)
batch_y = torch.tensor(batch_y).to(self.device)
return batch_x, batch_len, batch_y
def forward(self, dataloader, tags=None, testing=False, writer=None):
if not testing:
self.train()
else:
self.eval()
avg_loss = 0
all_predictions, all_labels = [], []
for batch_id, batch in enumerate(dataloader):
batch_x, batch_len, batch_y = next(iter(batch))
batch_x, batch_len, batch_y = self.vectorize(
batch_x, batch_len, batch_y)
batch_x_repr = self.learner(batch_x, batch_len)
output = self.dropout(batch_x_repr)
output = self.classifier(output)
batch_size, seq_len = output.shape[0], output.shape[1]
output = output.view(batch_size * seq_len, -1)
batch_y = batch_y.view(-1)
loss = self.loss_fn['ner'](output, batch_y)
avg_loss += loss.item()
if not testing:
self.optimizer.zero_grad()
loss.backward(retain_graph=True)
self.optimizer.step()
self.lr_scheduler.step()
output = output.view(batch_size, seq_len, -1)
batch_y = batch_y.view(batch_size, seq_len)
predictions, labels = [], []
for bid in range(batch_size):
relevant_indices = torch.nonzero(
batch_y[bid] != -1).view(-1).detach()
predictions.append(
list(
make_prediction(
output[bid]
[relevant_indices]).detach().cpu().numpy()))
# pdb.set_trace()
labels.append(
list(
batch_y[bid][relevant_indices].detach().cpu().numpy()))
accuracy, precision, recall, f1_score = utils.calculate_seqeval_metrics(
predictions, labels, tags, binary=False)
if writer is not None:
writer.add_scalar('Loss/iter',
avg_loss / (batch_id + 1),
global_step=batch_id + 1)
writer.add_scalar('F1/iter',
f1_score,
global_step=batch_id + 1)
if (batch_id + 1) % 100 == 0:
logger.info(
'Batch {}/{}, task {} [supervised]: Loss = {:.5f}, accuracy = {:.5f}, precision = {:.5f}, '
'recall = {:.5f}, F1 score = {:.5f}'.format(
batch_id + 1, len(dataloader), 'ner', loss.item(),
accuracy, precision, recall, f1_score))
all_predictions.extend(predictions)
all_labels.extend(labels)
avg_loss /= len(dataloader)
# Calculate metrics
accuracy, precision, recall, f1_score = utils.calculate_seqeval_metrics(
all_predictions, all_labels, binary=False)
return avg_loss, accuracy, precision, recall, f1_score