def build_hh_cell(sim, cell_area=None):
if cell_area is None:
cell_area = unit('5000:um2')
morphology = MorphologyBuilder.get_single_section_soma(area=cell_area)
cell = sim.create_cell(morphology=morphology)
# Apply the channels uniformly over the cell
env = sim.environment
modelsrc = StandardModels.HH52
cell.apply_channel(
ChannelLibrary.get_channel(modelsrc=modelsrc,
celltype=None,
channeltype="Na",
env=env))
cell.apply_channel(
ChannelLibrary.get_channel(modelsrc=modelsrc,
celltype=None,
channeltype="K",
env=env))
cell.apply_channel(
ChannelLibrary.get_channel(modelsrc=modelsrc,
celltype=None,
channeltype="Lk",
env=env))
return cell
def build_hh_cell(sim, cell_area=None):
if cell_area is None:
cell_area = unit('5000:um2')
morphology = MorphologyBuilder.get_single_section_soma(area = cell_area)
cell = sim.create_cell(morphology=morphology)
# Apply the channels uniformly over the cell
env = sim.environment
modelsrc=StandardModels.HH52
cell.apply_channel( ChannelLibrary.get_channel(modelsrc=modelsrc, celltype=None, channeltype="Na", env=env) )
cell.apply_channel( ChannelLibrary.get_channel(modelsrc=modelsrc, celltype=None, channeltype="K", env=env) )
cell.apply_channel( ChannelLibrary.get_channel(modelsrc=modelsrc, celltype=None, channeltype="Lk", env=env) )
return cell
)
return na_chl
@cached_functor
def get_sample_k(env):
kStateVars = {'n': {'alpha': [-0.55, -0.01, -1.00, 55.0, -10.00],
'beta': [0.125, 0, 0, 65, 80]}}
k_chl = env.Channel(
StdChlAlphaBeta,
name='KChl',
ion='k',
equation='n*n*n*n',
conductance=qty('36:mS/cm2'),
reversalpotential=qty('-77:mV'),
statevars=kStateVars,
)
return k_chl
ChannelLibrary.register_channel(modelsrc=StandardModels.HH52,
channeltype='Na',
chl_functor=get_sample_na)
ChannelLibrary.register_channel(modelsrc=StandardModels.HH52,
channeltype='K',
chl_functor=get_sample_k)
ChannelLibrary.register_channel(modelsrc=StandardModels.HH52,
channeltype='Lk',
chl_functor=get_sample_lk)
)
return na_chl
@cached_functor
def get_sample_k(env):
kStateVars = {'n': {'alpha': [-0.55, -0.01, -1.00, 55.0, -10.00],
'beta': [0.125, 0, 0, 65, 80]}}
k_chl = env.Channel(
StdChlAlphaBeta,
name='KChl',
ion='k',
equation='n*n*n*n',
conductance=unit('36:mS/cm2'),
reversalpotential=unit('-77:mV'),
statevars=kStateVars,
)
return k_chl
ChannelLibrary.register_channel(modelsrc=StandardModels.HH52,
channeltype='Na',
chl_functor=get_sample_na)
ChannelLibrary.register_channel(modelsrc=StandardModels.HH52,
channeltype='K',
chl_functor=get_sample_k)
ChannelLibrary.register_channel(modelsrc=StandardModels.HH52,
channeltype='Lk',
chl_functor=get_sample_lk)
