def evset_all_spikes(cls, res, tag_selector, comment=None):
comment = comment or ''
traces = [trace for trace in res.get_traces()
if tag_selector(trace)]
spike_list = [SpikeFinder.find_spikes(tr, crossingthresh=0,
firingthres=None) for tr in traces]
spike_list = itertools.chain(*spike_list)
spikes = EventSet(spike_list, tags=['Spike', 'Event'],
comment='%s (All Spike)' % comment)
return spikes
def evset_nth_spike(cls, res, tag_selector, n, comment=None):
comment = comment or ''
traces = [trace for trace in res.get_traces()
if tag_selector(trace)]
spike_list = [SpikeFinder.find_spikes(tr, crossingthresh=0,
firingthres=None) for tr in traces]
spike_list = [spl[n] for spl in spike_list if len(spl) > n]
spikes = EventSet(spike_list, tags=['Spike', 'Event'],
comment='%s (%d Spike)' % (comment, n))
return spikes
def evset_all_spikes(cls, res, tag_selector, comment=None):
comment = comment or ''
traces = [trace for trace in res.get_traces() if tag_selector(trace)]
spike_list = [
SpikeFinder.find_spikes(tr, crossingthresh=0, firingthres=None)
for tr in traces
]
spike_list = itertools.chain(*spike_list)
spikes = EventSet(spike_list,
tags=['Spike', 'Event'],
comment='%s (All Spike)' % comment)
return spikes
def evset_nth_spike(cls, res, tag_selector, n, comment=None):
comment = comment or ''
traces = [trace for trace in res.get_traces() if tag_selector(trace)]
spike_list = [
SpikeFinder.find_spikes(tr, crossingthresh=0, firingthres=None)
for tr in traces
]
spike_list = [spl[n] for spl in spike_list if len(spl) > n]
spikes = EventSet(spike_list,
tags=['Spike', 'Event'],
comment='%s (%d Spike)' % (comment, n))
return spikes
def evset_nth_spike(cls, res, tag_selector, n, comment=None, comment_incl_nspikes=False, evset_tags=None, evset_name=None):
comment = comment or ''
if evset_tags is None:
evset_tags = []
evset_tags.extend( ['Spike', 'Event'] )
traces = [trace for trace in res.get_traces()
if tag_selector(trace)]
spike_list = [SpikeFinder.find_spikes(tr, crossingthresh=0,
firingthres=None) for tr in traces]
spike_list = [spl[n] for spl in spike_list if len(spl) > n]
comment = '%s (%dth Spike)' % (comment, n)
if comment_incl_nspikes:
comment += ' (NSpikes: %d'%len(spike_list)
spikes = EventSet(spike_list, tags=evset_tags, name=evset_name, comment=comment)
return spikes
def evset_all_spikes(cls, res, tag_selector, comment=None, comment_incl_nspikes=False, evset_tags=None, evset_name=None):
if evset_tags is None:
evset_tags = []
evset_tags.extend( ['Spike', 'Event'] )
comment = comment or ''
traces = [trace for trace in res.get_traces()
if tag_selector(trace)]
spike_list = [SpikeFinder.find_spikes(tr, crossingthresh=0, firingthres=None) for tr in traces]
spike_list = list(itertools.chain(*spike_list) )
#print ' -- SL', spike_list
comment='%s (All Spike)' if not comment else comment
if comment_incl_nspikes:
comment += ' (NSpikes: %d'%len(list(spike_list) )
spikes = EventSet(spike_list, tags=evset_tags, comment=comment, name=evset_name)
return spikes