class TestSourcePlate():
test_plate = mt_echo.SourcePlate(filename='testplate.dat')
test_dir = os.path.dirname(os.path.realpath(__file__))
@pytest.mark.skip(reason="test not yet implemented")
def test_sanity(self):
assert 0
@pytest.mark.skip(reason="test not yet implemented")
def test_load_from_file(self):
assert 0
@pytest.mark.skip(reason="test not yet implemented")
def test_write_to_file(self):
assert 0
@pytest.mark.skip(reason="test not yet implemented")
def test_request_wells(self):
assert 0
@pytest.mark.skip(reason="test not yet implemented")
def test_increment_position(self):
assert 0
def test_load_csv_fails_for_missing_column_names(self):
with pytest.raises(AssertionError):
self.test_plate.load_well_definitions(
os.path.join(self.test_dir, 'test_def_bad_column_names.csv'))
def test_load_csv_passes_for_necessary_column_names(self):
try:
self.test_plate.load_well_definitions(
os.path.join(self.test_dir, 'test_def_good_column_names.csv'))
except AssertionError:
assert 0
assert 1
def test_get_chemical_location(self):
loc = self.test_plate.get_location('chemical')
assert loc == 'A1'
def test_get_chemical_and_conc_location(self):
loc = self.test_plate.get_location('chem', 10)
assert loc == 'A3'
loc = self.test_plate.get_location('chem', 100)
assert loc == 'A5'
def test_get_default_location_of_repeated_material(self):
loc = self.test_plate.get_location('h20')
assert loc == 'A6'
def test_get_one_location_of_repeated_material(self):
loc = self.test_plate.get_location('h20', i=1)
assert loc == 'A7'
def test_get_location_of_repeated_material_saturate_bounds(self):
loc = self.test_plate.get_location('h20', i=5)
assert loc == 'A8'
def test_increment_negative(self):
'''
Checks that exception is properly thrown when negative increments used.
'''
plate_in_file = os.path.join(self.test_dir, "deleteme.dat")
plate = mt_echo.SourcePlate(filename=plate_in_file)
with pytest.raises(ValueError):
plate.increment_position(-1)
def test_make_simple_picklist(test_dir):
# TODO Expand on assertions
dplate = mt_echo.DestinationPlate()
splate = mt_echo.SourcePlate()
splate.load_well_definitions(
os.path.join(test_dir, 'test_def_good_column_names.csv'))
rxns = [[['chem', 5, 10], ['h2o', 5]], [['chem', 5, 100], ['h2o', 5]]]
picklist, _ = dplate.make_picklist(splate, rxns)
assert picklist[0][0] == 'A3'
assert picklist[2][0] == 'A5'
def test_file_creation(self, tmpdir):
'''
Tests the case where no file exists yet for the plate.
'''
plate_file_name = tmpdir.mkdir("sub").join("hello.txt")
plate = mt_echo.SourcePlate(filename=plate_file_name)
plate.request_wells(5)
plate.write_to_file()
contents = ["A1", "A2", "A3", "A4", "A5", "A6"]
with open(plate_file_name, 'r') as plate_file:
for i, line in enumerate(plate_file):
assert contents[i] == line.strip()
def test_io(self):
'''
Checks that a plate file can be loaded and saved correctly.
'''
plate_in_file = os.path.join(self.test_dir,
"half_full_source_plate.dat")
plate_out_file = os.path.join(self.test_dir,
"half_full_source_plate_output.dat")
plate = mt_echo.SourcePlate(filename=plate_in_file)
reference_contents = np.zeros((16, 24))
used_locations = [(0, 0), (0, 1), (0, 2), (1, 3), (1, 4), (1, 5)]
for i, j in used_locations:
reference_contents[i, j] = 1
assert np.all(reference_contents == plate.wells_used)
plate.used_well_file = plate_out_file
plate.write_to_file()
with open(plate_in_file, 'r') as infile:
with open(plate_out_file, 'r') as outfile:
for in_line in infile:
out_line = next(outfile)
assert in_line.strip() == out_line.strip()
def test_increment_position_5(self):
'''
Checks that incrementing by 1 works properly.
'''
plate_in_file = os.path.join(self.test_dir, "deleteme.dat")
plate_types = ["384PP", "6"]
target_locations = [[(0, 0), (0, 5), (0, 10), (0, 15), (0, 20), (1, 1),
(1, 6), (1, 11), (1, 16), (1, 21), (2, 2), (2, 7),
(2, 12), (2, 17), (2, 22),
(3, 3), (3, 8), (3, 13), (3, 18), (3, 23), (4, 4),
(4, 9), (4, 14), (4, 19), (5, 0), (5, 5), (5, 10),
(5, 15), (5, 20),
(6, 1), (6, 6), (6, 11), (6, 16), (6, 21), (7, 2),
(7, 7), (7, 12), (7, 17), (7, 22), (8, 3), (8, 8),
(8, 13), (8, 18), (8, 23), (9, 4), (9, 9),
(9, 14), (9, 19), (10, 0), (10, 5), (10, 10),
(10, 15), (10, 20), (11, 1), (11, 6), (11, 11),
(11, 16), (11, 21), (12, 2), (12, 7), (12, 12),
(12, 17), (12, 22), (13, 3), (13, 8), (13, 13),
(13, 18), (13, 23), (14, 4), (14, 9), (14, 14),
(14, 19), (15, 0), (15, 5), (15, 10), (15, 15),
(15, 20)], [(0, 0), (1, 2)]]
for i, plate_type in enumerate(plate_types):
plate = mt_echo.SourcePlate(filename=plate_in_file,
SPtype=plate_type)
locs = target_locations[i]
assert plate.current_row == locs[0][0]
assert plate.current_col == locs[0][1]
for i in range(1, len(locs)):
plate.increment_position(5)
row, col = locs[i]
assert plate.current_row == row
assert plate.current_col == col
with pytest.raises(Exception):
plate.increment_position(5)
def test_io(self):
'''
Checks that a plate file can be loaded and saved correctly.
'''
plate_in_file = os.path.join(self.test_dir,
"half_full_source_plate.dat")
plate_out_file = os.path.join(self.test_dir,
"half_full_source_plate_output.dat")
plate = mt_echo.SourcePlate(filename=plate_in_file)
reference_contents = dict()
used_locations = ["A1", "A2", "A3", "B4", "B5", "B6"]
for well in used_locations:
reference_contents[well] = True
well_used = plate.wells_used
assert reference_contents == plate.wells_used
plate.used_well_file = plate_out_file
plate.write_to_file()
with open(plate_in_file, 'r') as infile:
with open(plate_out_file, 'r') as outfile:
for in_line in infile:
out_line = next(outfile)
assert in_line.strip() == out_line.strip()
class TestSourcePlate():
test_dir = os.path.join(os.path.dirname(os.path.realpath(__file__)),
'data')
test_plate = mt_echo.SourcePlate(
filename=os.path.join(test_dir, 'testplate.dat'))
def test_io(self):
'''
Checks that a plate file can be loaded and saved correctly.
'''
plate_in_file = os.path.join(self.test_dir,
"half_full_source_plate.dat")
plate_out_file = os.path.join(self.test_dir,
"half_full_source_plate_output.dat")
plate = mt_echo.SourcePlate(filename=plate_in_file)
reference_contents = np.zeros((16, 24))
used_locations = [(0, 0), (0, 1), (0, 2), (1, 3), (1, 4), (1, 5)]
for i, j in used_locations:
reference_contents[i, j] = 1
assert np.all(reference_contents == plate.wells_used)
plate.used_well_file = plate_out_file
plate.write_to_file()
with open(plate_in_file, 'r') as infile:
with open(plate_out_file, 'r') as outfile:
for in_line in infile:
out_line = next(outfile)
assert in_line.strip() == out_line.strip()
def test_file_creation(self, tmpdir):
'''
Tests the case where no file exists yet for the plate.
'''
plate_file_name = tmpdir.mkdir("sub").join("hello.txt")
plate = mt_echo.SourcePlate(filename=plate_file_name)
plate.request_wells(5)
plate.write_to_file()
contents = ["A1", "A2", "A3", "A4", "A5", "A6"]
with open(plate_file_name, 'r') as plate_file:
for i, line in enumerate(plate_file):
assert contents[i] == line.strip()
@pytest.mark.skip(reason="test not yet implemented")
def test_request_wells(self):
assert 0
@pytest.mark.skip(reason="test not yet implemented")
def test_request_wells_skip_line(self):
assert 0
def test_increment_negative(self):
'''
Checks that exception is properly thrown when negative increments used.
'''
plate_in_file = os.path.join(self.test_dir, "deleteme.dat")
plate = mt_echo.SourcePlate(filename=plate_in_file)
with pytest.raises(ValueError):
plate.increment_position(-1)
def test_increment_position_1(self):
'''
Checks that incrementing by 1 works properly.
'''
plate_in_file = os.path.join(self.test_dir, "deleteme.dat")
plate_types = ["384PP", "6"]
target_locations = [[(0, 0), (0, 1), (0, 2), (0, 3), (0, 4), (0, 5),
(0, 6), (0, 7), (0, 8), (0, 9), (0, 10), (0, 11),
(0, 12), (0, 13), (0, 14), (0, 15), (0, 16),
(0, 17), (0, 18), (0, 19), (0, 20), (0, 21),
(0, 22), (0, 23), (1, 0), (1, 1), (1, 2), (1, 3),
(1, 4), (1, 5), (1, 6), (1, 7), (1, 8), (1, 9),
(1, 10), (1, 11), (1, 12), (1, 13), (1, 14),
(1, 15), (1, 16), (1, 17), (1, 18), (1, 19),
(1, 20), (1, 21), (1, 22), (1, 23), (2, 0),
(2, 1), (2, 2), (2, 3), (2, 4), (2, 5), (2, 6),
(2, 7), (2, 8), (2, 9), (2, 10), (2, 11), (2, 12),
(2, 13), (2, 14), (2, 15), (2, 16), (2, 17),
(2, 18), (2, 19), (2, 20), (2, 21), (2, 22),
(2, 23), (3, 0), (3, 1), (3, 2), (3, 3), (3, 4),
(3, 5), (3, 6), (3, 7), (3, 8), (3, 9), (3, 10),
(3, 11), (3, 12), (3, 13), (3, 14), (3, 15),
(3, 16), (3, 17), (3, 18), (3, 19), (3, 20),
(3, 21), (3, 22), (3, 23), (4, 0), (4, 1), (4, 2),
(4, 3), (4, 4), (4, 5), (4, 6), (4, 7), (4, 8),
(4, 9), (4, 10), (4, 11), (4, 12),
(4, 13), (4, 14), (4, 15), (4, 16), (4, 17),
(4, 18), (4, 19), (4, 20), (4, 21), (4, 22),
(4, 23), (5, 0), (5, 1), (5, 2), (5, 3), (5, 4),
(5, 5), (5, 6), (5, 7), (5, 8), (5, 9), (5, 10),
(5, 11), (5, 12), (5, 13), (5, 14), (5, 15),
(5, 16), (5, 17), (5, 18), (5, 19), (5, 20),
(5, 21), (5, 22), (5, 23), (6, 0), (6, 1), (6, 2),
(6, 3), (6, 4), (6, 5), (6, 6), (6, 7), (6, 8),
(6, 9), (6, 10), (6, 11), (6, 12),
(6, 13), (6, 14), (6, 15), (6, 16), (6, 17),
(6, 18), (6, 19), (6, 20), (6, 21), (6, 22),
(6, 23), (7, 0), (7, 1), (7, 2), (7, 3), (7, 4),
(7, 5), (7, 6), (7, 7), (7, 8), (7, 9), (7, 10),
(7, 11), (7, 12), (7, 13), (7, 14), (7, 15),
(7, 16), (7, 17), (7, 18), (7, 19), (7, 20),
(7, 21), (7, 22), (7, 23), (8, 0), (8, 1), (8, 2),
(8, 3), (8, 4), (8, 5), (8, 6), (8, 7), (8, 8),
(8, 9), (8, 10), (8, 11), (8, 12),
(8, 13), (8, 14), (8, 15), (8, 16), (8, 17),
(8, 18), (8, 19), (8, 20), (8, 21), (8, 22),
(8, 23), (9, 0), (9, 1), (9, 2), (9, 3), (9, 4),
(9, 5), (9, 6), (9, 7), (9, 8), (9, 9), (9, 10),
(9, 11), (9, 12), (9, 13), (9, 14), (9, 15),
(9, 16), (9, 17), (9, 18), (9, 19), (9, 20),
(9, 21), (9, 22), (9, 23), (10, 0), (10, 1),
(10, 2), (10, 3), (10, 4), (10, 5), (10, 6),
(10, 7), (10, 8), (10, 9), (10, 10), (10, 11),
(10, 12), (10, 13), (10, 14), (10, 15), (10, 16),
(10, 17), (10, 18), (10, 19), (10, 20), (10, 21),
(10, 22), (10, 23), (11, 0), (11, 1), (11, 2),
(11, 3), (11, 4), (11, 5), (11, 6), (11, 7),
(11, 8), (11, 9), (11, 10), (11, 11), (11, 12),
(11, 13), (11, 14), (11, 15), (11, 16), (11, 17),
(11, 18), (11, 19), (11, 20), (11, 21), (11, 22),
(11, 23), (12, 0), (12, 1), (12, 2), (12, 3),
(12, 4), (12, 5), (12, 6), (12, 7), (12, 8),
(12, 9), (12, 10), (12, 11), (12, 12), (12, 13),
(12, 14), (12, 15), (12, 16), (12, 17), (12, 18),
(12, 19), (12, 20), (12, 21), (12, 22), (12, 23),
(13, 0), (13, 1), (13, 2), (13, 3), (13, 4),
(13, 5), (13, 6), (13, 7), (13, 8), (13, 9),
(13, 10), (13, 11), (13, 12), (13, 13), (13, 14),
(13, 15), (13, 16), (13, 17), (13, 18), (13, 19),
(13, 20), (13, 21), (13, 22), (13, 23), (14, 0),
(14, 1), (14, 2), (14, 3), (14, 4), (14, 5),
(14, 6), (14, 7), (14, 8), (14, 9), (14, 10),
(14, 11), (14, 12), (14, 13), (14, 14), (14, 15),
(14, 16), (14, 17), (14, 18), (14, 19), (14, 20),
(14, 21), (14, 22), (14, 23), (15, 0), (15, 1),
(15, 2), (15, 3), (15, 4), (15, 5), (15, 6),
(15, 7), (15, 8), (15, 9), (15, 10), (15, 11),
(15, 12), (15, 13), (15, 14), (15, 15), (15, 16),
(15, 17), (15, 18), (15, 19), (15, 20), (15, 21),
(15, 22), (15, 23)],
[(0, 0), (0, 1), (0, 2), (1, 0), (1, 1), (1, 2)]]
for i, plate_type in enumerate(plate_types):
plate = mt_echo.SourcePlate(filename=plate_in_file,
SPtype=plate_type)
locs = target_locations[i]
assert plate.current_row == locs[0][0]
assert plate.current_col == locs[0][1]
for i in range(1, len(locs)):
plate.increment_position(1)
row, col = locs[i]
assert plate.current_row == row
assert plate.current_col == col
with pytest.raises(Exception):
plate.increment_position(1)
def test_increment_position_5(self):
'''
Checks that incrementing by 1 works properly.
'''
plate_in_file = os.path.join(self.test_dir, "deleteme.dat")
plate_types = ["384PP", "6"]
target_locations = [[(0, 0), (0, 5), (0, 10), (0, 15), (0, 20), (1, 1),
(1, 6), (1, 11), (1, 16), (1, 21), (2, 2), (2, 7),
(2, 12), (2, 17), (2, 22),
(3, 3), (3, 8), (3, 13), (3, 18), (3, 23), (4, 4),
(4, 9), (4, 14), (4, 19), (5, 0), (5, 5), (5, 10),
(5, 15), (5, 20),
(6, 1), (6, 6), (6, 11), (6, 16), (6, 21), (7, 2),
(7, 7), (7, 12), (7, 17), (7, 22), (8, 3), (8, 8),
(8, 13), (8, 18), (8, 23), (9, 4), (9, 9),
(9, 14), (9, 19), (10, 0), (10, 5), (10, 10),
(10, 15), (10, 20), (11, 1), (11, 6), (11, 11),
(11, 16), (11, 21), (12, 2), (12, 7), (12, 12),
(12, 17), (12, 22), (13, 3), (13, 8), (13, 13),
(13, 18), (13, 23), (14, 4), (14, 9), (14, 14),
(14, 19), (15, 0), (15, 5), (15, 10), (15, 15),
(15, 20)], [(0, 0), (1, 2)]]
for i, plate_type in enumerate(plate_types):
plate = mt_echo.SourcePlate(filename=plate_in_file,
SPtype=plate_type)
locs = target_locations[i]
assert plate.current_row == locs[0][0]
assert plate.current_col == locs[0][1]
for i in range(1, len(locs)):
plate.increment_position(5)
row, col = locs[i]
assert plate.current_row == row
assert plate.current_col == col
with pytest.raises(Exception):
plate.increment_position(5)
def test_load_csv_fails_for_missing_column_names(self):
with pytest.raises(AssertionError):
self.test_plate.load_well_definitions(
os.path.join(self.test_dir, 'test_def_bad_column_names.csv'))
def test_load_csv_passes_for_necessary_column_names(self):
try:
self.test_plate.load_well_definitions(
os.path.join(self.test_dir, 'test_def_good_column_names.csv'))
except AssertionError:
assert 0
assert 1
def test_get_chemical_location(self):
loc = self.test_plate.get_location('chemical')
assert loc == 'A1'
def test_get_chemical_and_conc_location(self):
loc = self.test_plate.get_location('chem', 10)
assert loc == 'A3'
loc = self.test_plate.get_location('chem', 100)
assert loc == 'A5'
def test_get_default_location_of_repeated_material(self):
loc = self.test_plate.get_location('h20')
assert loc == 'A6'
def test_get_one_location_of_repeated_material(self):
loc = self.test_plate.get_location('h20', i=1)
assert loc == 'A7'
def test_get_location_of_repeated_material_saturate_bounds(self):
loc = self.test_plate.get_location('h20', i=5)
assert loc == 'A8'
class TestSourcePlate():
test_dir = os.path.join(os.path.dirname(os.path.realpath(__file__)),
'data')
test_plate = mt_echo.SourcePlate(
filename=os.path.join(test_dir, 'testplate.dat'))
def test_io(self):
'''
Checks that a plate file can be loaded and saved correctly.
'''
plate_in_file = os.path.join(self.test_dir,
"half_full_source_plate.dat")
plate_out_file = os.path.join(self.test_dir,
"half_full_source_plate_output.dat")
plate = mt_echo.SourcePlate(filename=plate_in_file)
reference_contents = dict()
used_locations = ["A1", "A2", "A3", "B4", "B5", "B6"]
for well in used_locations:
reference_contents[well] = True
well_used = plate.wells_used
assert reference_contents == plate.wells_used
plate.used_well_file = plate_out_file
plate.write_to_file()
with open(plate_in_file, 'r') as infile:
with open(plate_out_file, 'r') as outfile:
for in_line in infile:
out_line = next(outfile)
assert in_line.strip() == out_line.strip()
def test_file_creation(self, tmpdir):
'''
Tests the case where no file exists yet for the plate.
'''
plate_file_name = tmpdir.mkdir("sub").join("hello.txt")
plate = mt_echo.SourcePlate(filename=plate_file_name)
plate.request_wells(5)
plate.write_to_file()
contents = ["A1", "A2", "A3", "A4", "A5", "A6"]
with open(plate_file_name, 'r') as plate_file:
for i, line in enumerate(plate_file):
assert contents[i] == line.strip()
@pytest.mark.skip(reason="test not yet implemented")
def test_request_wells(self):
assert 0
@pytest.mark.skip(reason="test not yet implemented")
def test_request_wells_skip_line(self):
assert 0
def test_increment_negative(self):
'''
Checks that exception is properly thrown when negative increments used.
'''
plate_in_file = os.path.join(self.test_dir, "deleteme.dat")
plate = mt_echo.SourcePlate(filename=plate_in_file)
with pytest.raises(ValueError):
plate.increment_position(-1)
def test_increment_position_1(self):
'''
Checks that incrementing by 1 works properly.
'''
plate_in_file = os.path.join(self.test_dir, "deleteme.dat")
plate_types = ["384PP", "6"]
target_locations = [[(0, 0), (0, 1), (0, 2), (0, 3), (0, 4), (0, 5),
(0, 6), (0, 7), (0, 8), (0, 9), (0, 10), (0, 11),
(0, 12), (0, 13), (0, 14), (0, 15), (0, 16),
(0, 17), (0, 18), (0, 19), (0, 20), (0, 21),
(0, 22), (0, 23), (1, 0), (1, 1), (1, 2), (1, 3),
(1, 4), (1, 5), (1, 6), (1, 7), (1, 8), (1, 9),
(1, 10), (1, 11), (1, 12), (1, 13), (1, 14),
(1, 15), (1, 16), (1, 17), (1, 18), (1, 19),
(1, 20), (1, 21), (1, 22), (1, 23), (2, 0),
(2, 1), (2, 2), (2, 3), (2, 4), (2, 5), (2, 6),
(2, 7), (2, 8), (2, 9), (2, 10), (2, 11), (2, 12),
(2, 13), (2, 14), (2, 15), (2, 16), (2, 17),
(2, 18), (2, 19), (2, 20), (2, 21), (2, 22),
(2, 23), (3, 0), (3, 1), (3, 2), (3, 3), (3, 4),
(3, 5), (3, 6), (3, 7), (3, 8), (3, 9), (3, 10),
(3, 11), (3, 12), (3, 13), (3, 14), (3, 15),
(3, 16), (3, 17), (3, 18), (3, 19), (3, 20),
(3, 21), (3, 22), (3, 23), (4, 0), (4, 1), (4, 2),
(4, 3), (4, 4), (4, 5), (4, 6), (4, 7), (4, 8),
(4, 9), (4, 10), (4, 11), (4, 12),
(4, 13), (4, 14), (4, 15), (4, 16), (4, 17),
(4, 18), (4, 19), (4, 20), (4, 21), (4, 22),
(4, 23), (5, 0), (5, 1), (5, 2), (5, 3), (5, 4),
(5, 5), (5, 6), (5, 7), (5, 8), (5, 9), (5, 10),
(5, 11), (5, 12), (5, 13), (5, 14), (5, 15),
(5, 16), (5, 17), (5, 18), (5, 19), (5, 20),
(5, 21), (5, 22), (5, 23), (6, 0), (6, 1), (6, 2),
(6, 3), (6, 4), (6, 5), (6, 6), (6, 7), (6, 8),
(6, 9), (6, 10), (6, 11), (6, 12),
(6, 13), (6, 14), (6, 15), (6, 16), (6, 17),
(6, 18), (6, 19), (6, 20), (6, 21), (6, 22),
(6, 23), (7, 0), (7, 1), (7, 2), (7, 3), (7, 4),
(7, 5), (7, 6), (7, 7), (7, 8), (7, 9), (7, 10),
(7, 11), (7, 12), (7, 13), (7, 14), (7, 15),
(7, 16), (7, 17), (7, 18), (7, 19), (7, 20),
(7, 21), (7, 22), (7, 23), (8, 0), (8, 1), (8, 2),
(8, 3), (8, 4), (8, 5), (8, 6), (8, 7), (8, 8),
(8, 9), (8, 10), (8, 11), (8, 12),
(8, 13), (8, 14), (8, 15), (8, 16), (8, 17),
(8, 18), (8, 19), (8, 20), (8, 21), (8, 22),
(8, 23), (9, 0), (9, 1), (9, 2), (9, 3), (9, 4),
(9, 5), (9, 6), (9, 7), (9, 8), (9, 9), (9, 10),
(9, 11), (9, 12), (9, 13), (9, 14), (9, 15),
(9, 16), (9, 17), (9, 18), (9, 19), (9, 20),
(9, 21), (9, 22), (9, 23), (10, 0), (10, 1),
(10, 2), (10, 3), (10, 4), (10, 5), (10, 6),
(10, 7), (10, 8), (10, 9), (10, 10), (10, 11),
(10, 12), (10, 13), (10, 14), (10, 15), (10, 16),
(10, 17), (10, 18), (10, 19), (10, 20), (10, 21),
(10, 22), (10, 23), (11, 0), (11, 1), (11, 2),
(11, 3), (11, 4), (11, 5), (11, 6), (11, 7),
(11, 8), (11, 9), (11, 10), (11, 11), (11, 12),
(11, 13), (11, 14), (11, 15), (11, 16), (11, 17),
(11, 18), (11, 19), (11, 20), (11, 21), (11, 22),
(11, 23), (12, 0), (12, 1), (12, 2), (12, 3),
(12, 4), (12, 5), (12, 6), (12, 7), (12, 8),
(12, 9), (12, 10), (12, 11), (12, 12), (12, 13),
(12, 14), (12, 15), (12, 16), (12, 17), (12, 18),
(12, 19), (12, 20), (12, 21), (12, 22), (12, 23),
(13, 0), (13, 1), (13, 2), (13, 3), (13, 4),
(13, 5), (13, 6), (13, 7), (13, 8), (13, 9),
(13, 10), (13, 11), (13, 12), (13, 13), (13, 14),
(13, 15), (13, 16), (13, 17), (13, 18), (13, 19),
(13, 20), (13, 21), (13, 22), (13, 23), (14, 0),
(14, 1), (14, 2), (14, 3), (14, 4), (14, 5),
(14, 6), (14, 7), (14, 8), (14, 9), (14, 10),
(14, 11), (14, 12), (14, 13), (14, 14), (14, 15),
(14, 16), (14, 17), (14, 18), (14, 19), (14, 20),
(14, 21), (14, 22), (14, 23), (15, 0), (15, 1),
(15, 2), (15, 3), (15, 4), (15, 5), (15, 6),
(15, 7), (15, 8), (15, 9), (15, 10), (15, 11),
(15, 12), (15, 13), (15, 14), (15, 15), (15, 16),
(15, 17), (15, 18), (15, 19), (15, 20), (15, 21),
(15, 22), (15, 23)],
[(0, 0), (0, 1), (0, 2), (1, 0), (1, 1), (1, 2)]]
for i, plate_type in enumerate(plate_types):
plate = mt_echo.SourcePlate(filename=plate_in_file,
SPtype=plate_type)
locs = target_locations[i]
assert plate.current_row == locs[0][0]
assert plate.current_col == locs[0][1]
for i in range(1, len(locs)):
plate.increment_position(1)
row, col = locs[i]
assert plate.current_row == row
assert plate.current_col == col
with pytest.raises(Exception):
plate.increment_position(1)
def test_increment_position_5(self):
'''
Checks that incrementing by 1 works properly.
'''
plate_in_file = os.path.join(self.test_dir, "deleteme.dat")
plate_types = ["384PP", "6"]
target_locations = [[(0, 0), (0, 5), (0, 10), (0, 15), (0, 20), (1, 1),
(1, 6), (1, 11), (1, 16), (1, 21), (2, 2), (2, 7),
(2, 12), (2, 17), (2, 22),
(3, 3), (3, 8), (3, 13), (3, 18), (3, 23), (4, 4),
(4, 9), (4, 14), (4, 19), (5, 0), (5, 5), (5, 10),
(5, 15), (5, 20),
(6, 1), (6, 6), (6, 11), (6, 16), (6, 21), (7, 2),
(7, 7), (7, 12), (7, 17), (7, 22), (8, 3), (8, 8),
(8, 13), (8, 18), (8, 23), (9, 4), (9, 9),
(9, 14), (9, 19), (10, 0), (10, 5), (10, 10),
(10, 15), (10, 20), (11, 1), (11, 6), (11, 11),
(11, 16), (11, 21), (12, 2), (12, 7), (12, 12),
(12, 17), (12, 22), (13, 3), (13, 8), (13, 13),
(13, 18), (13, 23), (14, 4), (14, 9), (14, 14),
(14, 19), (15, 0), (15, 5), (15, 10), (15, 15),
(15, 20)], [(0, 0), (1, 2)]]
for i, plate_type in enumerate(plate_types):
plate = mt_echo.SourcePlate(filename=plate_in_file,
SPtype=plate_type)
locs = target_locations[i]
assert plate.current_row == locs[0][0]
assert plate.current_col == locs[0][1]
for i in range(1, len(locs)):
plate.increment_position(5)
row, col = locs[i]
assert plate.current_row == row
assert plate.current_col == col
with pytest.raises(Exception):
plate.increment_position(5)