def populate_widget(self, tree_view_item, data_collection):
self._tree_view_item = tree_view_item
self._data_collection = data_collection
# if isinstance(tree_view_item, queue_item.XrayCenteringQueueItem):
# self._data_collection = tree_view_item.get_model().reference_image_collection
# else:
# self._data_collection = tree_view_item.get_model()
executed = self._data_collection.is_executed()
self._acq_widget.setEnabled(not executed)
self._data_path_widget.setEnabled(not executed)
self._acquisition_mib = DataModelInputBinder(
self._data_collection.acquisitions[0].acquisition_parameters)
# The acq_widget sends a signal to the path_widget, and it relies
# on that both models upto date, we need to refactor this part
# so that both models are set before taking ceratin actions.
# This workaround, works for the time beeing.
self._data_path_widget.update_data_model(
self._data_collection.acquisitions[0].path_template)
self._acq_widget.update_data_model(
self._data_collection.acquisitions[0].acquisition_parameters,
self._data_collection.acquisitions[0].path_template,
)
# self._acq_widget.use_osc_start(False)
self._acq_widget.acq_widget_layout.num_images_ledit.setDisabled(
data_collection.is_mesh())
invalid = self._acquisition_mib.validate_all()
if invalid:
msg = (
"This data collection has one or more incorrect parameters," +
" correct the fields marked in red to solve the problem.")
logging.getLogger("GUI").warning(msg)
def __init__(self, parent=None, name=None, fl=0, data_model=None):
qt_import.QWidget.__init__(self, parent, qt_import.Qt.WindowFlags(fl))
if name is not None:
self.setObjectName(name)
if data_model is None:
self._model = queue_model_objects.ProcessingParameters()
else:
self._model = data_model
self._model_mib = DataModelInputBinder(self._model)
self.processing_widget = qt_import.load_ui_file(
"processing_widget_vertical_layout.ui")
self.main_layout = qt_import.QVBoxLayout(self)
self.main_layout.addWidget(self.processing_widget)
self.main_layout.setSpacing(0)
self.main_layout.setContentsMargins(0, 0, 0, 0)
self.processing_widget.space_group_combo.addItems(
queue_model_enumerables.XTAL_SPACEGROUPS)
self._model_mib.bind_value_update("cell_a",
self.processing_widget.a_ledit,
float, None)
self._model_mib.bind_value_update("cell_alpha",
self.processing_widget.alpha_ledit,
float, None)
self._model_mib.bind_value_update("cell_b",
self.processing_widget.b_ledit,
float, None)
self._model_mib.bind_value_update("cell_beta",
self.processing_widget.beta_ledit,
float, None)
self._model_mib.bind_value_update("cell_c",
self.processing_widget.c_ledit,
float, None)
self._model_mib.bind_value_update("cell_gamma",
self.processing_widget.gamma_ledit,
float, None)
self._model_mib.bind_value_update(
"num_residues", self.processing_widget.num_residues_ledit, float,
None)
self._model_mib.bind_value_update(
"resolution_cutoff",
self.processing_widget.resolution_cutoff_ledit, float, None)
self._model_mib.bind_value_update(
"pdb_file", self.processing_widget.pdb_file_ledit, str, None)
self.processing_widget.space_group_combo.activated.connect(
self._space_group_change)
self.processing_widget.run_offline_processing_cbox.stateChanged.connect(
self._run_offline_processing_toggled)
self.processing_widget.run_online_processing_cbox.stateChanged.connect(
self._run_online_processing_toggled)
self.processing_widget.pdb_file_browse_button.clicked.connect(
self._browse_clicked)
self.processing_widget.resolution_cutoff_label.setHidden(True)
self.processing_widget.resolution_cutoff_ledit.setHidden(True)
self.processing_widget.pdb_file_label.setHidden(True)
self.processing_widget.pdb_file_ledit.setHidden(True)
self.processing_widget.pdb_file_browse_button.setHidden(True)
if HWR.beamline.offline_processing_methods:
cbox_text = "Run offline processing ("
for method in HWR.beamline.offline_processing_methods:
cbox_text += "%s, " % method
cbox_text = cbox_text[:-2] + ")"
self.processing_widget.run_offline_processing_cbox.setText(
cbox_text)
self.processing_widget.run_offline_processing_cbox.setChecked(
HWR.beamline.run_offline_processing)
else:
self.processing_widget.run_offline_processing_cbox.setChecked(
False)
self.processing_widget.run_offline_processing_cbox.setEnabled(
False)
if HWR.beamline.online_processing_methods:
cbox_text = "Run online processing ("
for method in HWR.beamline.online_processing_methods:
cbox_text += "%s, " % method
cbox_text = cbox_text[:-2] + ")"
self.processing_widget.run_online_processing_cbox.setText(
cbox_text)
self.processing_widget.run_online_processing_cbox.setChecked(
HWR.beamline.run_online_processing)
else:
self.processing_widget.run_online_processing_cbox.setChecked(False)
self.processing_widget.run_online_processing_cbox.setEnabled(False)
class ProcessingWidget(qt_import.QWidget):
enableProcessingSignal = qt_import.pyqtSignal(bool, bool)
def __init__(self, parent=None, name=None, fl=0, data_model=None):
qt_import.QWidget.__init__(self, parent, qt_import.Qt.WindowFlags(fl))
if name is not None:
self.setObjectName(name)
if data_model is None:
self._model = queue_model_objects.ProcessingParameters()
else:
self._model = data_model
self._model_mib = DataModelInputBinder(self._model)
self.processing_widget = qt_import.load_ui_file(
"processing_widget_vertical_layout.ui")
self.main_layout = qt_import.QVBoxLayout(self)
self.main_layout.addWidget(self.processing_widget)
self.main_layout.setSpacing(0)
self.main_layout.setContentsMargins(0, 0, 0, 0)
self.processing_widget.space_group_combo.addItems(
queue_model_enumerables.XTAL_SPACEGROUPS)
self._model_mib.bind_value_update("cell_a",
self.processing_widget.a_ledit,
float, None)
self._model_mib.bind_value_update("cell_alpha",
self.processing_widget.alpha_ledit,
float, None)
self._model_mib.bind_value_update("cell_b",
self.processing_widget.b_ledit,
float, None)
self._model_mib.bind_value_update("cell_beta",
self.processing_widget.beta_ledit,
float, None)
self._model_mib.bind_value_update("cell_c",
self.processing_widget.c_ledit,
float, None)
self._model_mib.bind_value_update("cell_gamma",
self.processing_widget.gamma_ledit,
float, None)
self._model_mib.bind_value_update(
"num_residues", self.processing_widget.num_residues_ledit, float,
None)
self._model_mib.bind_value_update(
"resolution_cutoff",
self.processing_widget.resolution_cutoff_ledit, float, None)
self._model_mib.bind_value_update(
"pdb_file", self.processing_widget.pdb_file_ledit, str, None)
self.processing_widget.space_group_combo.activated.connect(
self._space_group_change)
self.processing_widget.run_offline_processing_cbox.stateChanged.connect(
self._run_offline_processing_toggled)
self.processing_widget.run_online_processing_cbox.stateChanged.connect(
self._run_online_processing_toggled)
self.processing_widget.pdb_file_browse_button.clicked.connect(
self._browse_clicked)
self.processing_widget.resolution_cutoff_label.setHidden(True)
self.processing_widget.resolution_cutoff_ledit.setHidden(True)
self.processing_widget.pdb_file_label.setHidden(True)
self.processing_widget.pdb_file_ledit.setHidden(True)
self.processing_widget.pdb_file_browse_button.setHidden(True)
if HWR.beamline.offline_processing_methods:
cbox_text = "Run offline processing ("
for method in HWR.beamline.offline_processing_methods:
cbox_text += "%s, " % method
cbox_text = cbox_text[:-2] + ")"
self.processing_widget.run_offline_processing_cbox.setText(
cbox_text)
self.processing_widget.run_offline_processing_cbox.setChecked(
HWR.beamline.run_offline_processing)
else:
self.processing_widget.run_offline_processing_cbox.setChecked(
False)
self.processing_widget.run_offline_processing_cbox.setEnabled(
False)
if HWR.beamline.online_processing_methods:
cbox_text = "Run online processing ("
for method in HWR.beamline.online_processing_methods:
cbox_text += "%s, " % method
cbox_text = cbox_text[:-2] + ")"
self.processing_widget.run_online_processing_cbox.setText(
cbox_text)
self.processing_widget.run_online_processing_cbox.setChecked(
HWR.beamline.run_online_processing)
else:
self.processing_widget.run_online_processing_cbox.setChecked(False)
self.processing_widget.run_online_processing_cbox.setEnabled(False)
def _space_group_change(self, index):
self._model.space_group = queue_model_enumerables.XTAL_SPACEGROUPS[
index]
def _set_space_group(self, space_group):
index = 0
if space_group in queue_model_enumerables.XTAL_SPACEGROUPS:
index = queue_model_enumerables.XTAL_SPACEGROUPS.index(space_group)
self._space_group_change(index)
self.processing_widget.space_group_combo.setCurrentIndex(index)
def update_data_model(self, model):
self._model = model
self._model_mib.set_model(model)
self._set_space_group(model.space_group)
def _run_offline_processing_toggled(self, state):
self.enableProcessingSignal.emit(
self.processing_widget.run_offline_processing_cbox.isChecked(),
self.processing_widget.run_online_processing_cbox.isChecked(),
)
def _run_online_processing_toggled(self, state):
self.enableProcessingSignal.emit(
self.processing_widget.run_offline_processing_cbox.isChecked(),
self.processing_widget.run_online_processing_cbox.isChecked(),
)
def _browse_clicked(self):
file_dialog = qt_import.QFileDialog(self)
pdb_filename = str(
file_dialog.getOpenFileName(self, "Select a PDB file",
expanduser("~")))
self._model.pdb_file = pdb_filename
self.processing_widget.pdb_file_ledit.setText(pdb_filename)
def get_processing_state(self):
return self.processing_widget.run_offline_processing_cbox.isChecked(), \
self.processing_widget.run_online_processing_cbox.isChecked()
def __init__(
self,
parent=None,
name=None,
fl=0,
acq_params=None,
path_template=None,
layout=None,
):
qt_import.QWidget.__init__(self, parent, qt_import.Qt.WindowFlags(fl))
if name is not None:
self.setObjectName(name)
# Internal variables --------------------------------------------------
self.value_changed_list = []
# Properties ----------------------------------------------------------
# Signals -------------------------------------------------------------
# Slots ---------------------------------------------------------------
# Graphic elements ----------------------------------------------------
if acq_params is None:
self._acquisition_parameters = queue_model_objects.AcquisitionParameters(
)
else:
self._acquisition_parameters = acq_params
if path_template is None:
self._path_template = queue_model_objects.PathTemplate()
else:
self._path_template = path_template
self._acquisition_mib = DataModelInputBinder(
self._acquisition_parameters)
self.acq_widget_layout = qt_import.load_ui_file(
"acquisition_widget_vertical_simple_layout.ui")
# Layout --------------------------------------------------------------
main_layout = qt_import.QVBoxLayout(self)
main_layout.addWidget(self.acq_widget_layout)
main_layout.setSpacing(0)
main_layout.setContentsMargins(0, 0, 0, 0)
# SizePolicies --------------------------------------------------------
# Qt signal/slot connections ------------------------------------------
self.acq_widget_layout.osc_start_cbox.stateChanged.connect(
self.use_osc_start)
self.acq_widget_layout.num_images_cbox.activated.connect(
self.update_num_images)
self.acq_widget_layout.detector_roi_mode_combo.activated.connect(
self.detector_roi_mode_changed)
# Other ---------------------------------------------------------------
self.osc_start_validator = qt_import.QDoubleValidator(
-10000, 10000, 4, self.acq_widget_layout.osc_start_ledit)
self.osc_range_validator = qt_import.QDoubleValidator(
-10000, 10000, 4, self.acq_widget_layout.osc_range_ledit)
self.kappa_validator = qt_import.QDoubleValidator(
0, 360, 4, self.acq_widget_layout.kappa_ledit)
self.kappa_phi_validator = qt_import.QDoubleValidator(
0, 360, 4, self.acq_widget_layout.kappa_phi_ledit)
self.energy_validator = qt_import.QDoubleValidator(
0, 25, 5, self.acq_widget_layout.energy_ledit)
self.resolution_validator = qt_import.QDoubleValidator(
0, 15, 3, self.acq_widget_layout.resolution_ledit)
self.transmission_validator = qt_import.QDoubleValidator(
0, 100, 3, self.acq_widget_layout.transmission_ledit)
self.exp_time_validator = qt_import.QDoubleValidator(
0, 10000, 6, self.acq_widget_layout.exp_time_ledit)
self.acq_widget_layout.num_images_cbox.setCurrentIndex(1)
self.acq_widget_layout.detector_roi_mode_label.setEnabled(False)
self.acq_widget_layout.detector_roi_mode_combo.setEnabled(False)
self.set_tunable_energy(HWR.beamline.tunable_wavelength)
if HWR.beamline.diffractometer.in_plate_mode():
self.acq_widget_layout.num_images_cbox.clear()
self.acq_widget_layout.num_images_cbox.addItem("1")
self.acq_widget_layout.num_images_cbox.setCurrentIndex(0)
self.init_detector_roi_modes()
self.init_limits()
class AcquisitionWidgetSimple(qt_import.QWidget):
acqParametersChangedSignal = qt_import.pyqtSignal(list)
madEnergySelectedSignal = qt_import.pyqtSignal(str, float, bool)
def __init__(
self,
parent=None,
name=None,
fl=0,
acq_params=None,
path_template=None,
layout=None,
):
qt_import.QWidget.__init__(self, parent, qt_import.Qt.WindowFlags(fl))
if name is not None:
self.setObjectName(name)
# Internal variables --------------------------------------------------
self.value_changed_list = []
# Properties ----------------------------------------------------------
# Signals -------------------------------------------------------------
# Slots ---------------------------------------------------------------
# Graphic elements ----------------------------------------------------
if acq_params is None:
self._acquisition_parameters = queue_model_objects.AcquisitionParameters(
)
else:
self._acquisition_parameters = acq_params
if path_template is None:
self._path_template = queue_model_objects.PathTemplate()
else:
self._path_template = path_template
self._acquisition_mib = DataModelInputBinder(
self._acquisition_parameters)
self.acq_widget_layout = qt_import.load_ui_file(
"acquisition_widget_vertical_simple_layout.ui")
# Layout --------------------------------------------------------------
main_layout = qt_import.QVBoxLayout(self)
main_layout.addWidget(self.acq_widget_layout)
main_layout.setSpacing(0)
main_layout.setContentsMargins(0, 0, 0, 0)
# SizePolicies --------------------------------------------------------
# Qt signal/slot connections ------------------------------------------
self.acq_widget_layout.osc_start_cbox.stateChanged.connect(
self.use_osc_start)
self.acq_widget_layout.num_images_cbox.activated.connect(
self.update_num_images)
self.acq_widget_layout.detector_roi_mode_combo.activated.connect(
self.detector_roi_mode_changed)
# Other ---------------------------------------------------------------
self.osc_start_validator = qt_import.QDoubleValidator(
-10000, 10000, 4, self.acq_widget_layout.osc_start_ledit)
self.osc_range_validator = qt_import.QDoubleValidator(
-10000, 10000, 4, self.acq_widget_layout.osc_range_ledit)
self.kappa_validator = qt_import.QDoubleValidator(
0, 360, 4, self.acq_widget_layout.kappa_ledit)
self.kappa_phi_validator = qt_import.QDoubleValidator(
0, 360, 4, self.acq_widget_layout.kappa_phi_ledit)
self.energy_validator = qt_import.QDoubleValidator(
0, 25, 5, self.acq_widget_layout.energy_ledit)
self.resolution_validator = qt_import.QDoubleValidator(
0, 15, 3, self.acq_widget_layout.resolution_ledit)
self.transmission_validator = qt_import.QDoubleValidator(
0, 100, 3, self.acq_widget_layout.transmission_ledit)
self.exp_time_validator = qt_import.QDoubleValidator(
0, 10000, 6, self.acq_widget_layout.exp_time_ledit)
self.acq_widget_layout.num_images_cbox.setCurrentIndex(1)
self.acq_widget_layout.detector_roi_mode_label.setEnabled(False)
self.acq_widget_layout.detector_roi_mode_combo.setEnabled(False)
self.set_tunable_energy(HWR.beamline.tunable_wavelength)
if HWR.beamline.diffractometer.in_plate_mode():
self.acq_widget_layout.num_images_cbox.clear()
self.acq_widget_layout.num_images_cbox.addItem("1")
self.acq_widget_layout.num_images_cbox.setCurrentIndex(0)
self.init_detector_roi_modes()
self.init_limits()
def update_osc_total_range(self):
pass
def set_osc_start_limits(self, limits):
if not None in limits:
self.osc_start_validator.setRange(limits[0], limits[1], 4)
def update_osc_start(self, new_value):
if not self.acq_widget_layout.osc_start_cbox.hasFocus():
self.acq_widget_layout.osc_start_ledit.setText(str(new_value))
def update_kappa(self, new_value):
if not self.acq_widget_layout.kappa_ledit.hasFocus():
self.acq_widget_layout.kappa_ledit.setText(str(new_value))
def update_kappa_phi(self, new_value):
if not self.acq_widget_layout.kappa_phi_ledit.hasFocus():
self.acq_widget_layout.kappa_phi_ledit.setText(str(new_value))
def use_kappa(self, state):
if HWR.beamline.diffractometer.in_plate_mode():
state = False
self.acq_widget_layout.kappa_label.setEnabled(state)
self.acq_widget_layout.kappa_ledit.setEnabled(state)
self.acq_widget_layout.kappa_phi_label.setEnabled(state)
self.acq_widget_layout.kappa_phi_ledit.setEnabled(state)
def use_max_osc_range(self, state):
pass
def update_num_images(self, index=None, num_images=None):
if index is not None:
if index is 0:
self._acquisition_parameters.num_images = 1
self._path_template.num_files = 1
elif index is 1:
self._acquisition_parameters.num_images = 2
self._path_template.num_files = 2
elif index is 2:
self._acquisition_parameters.num_images = 4
self._path_template.num_files = 4
if num_images:
if self.acq_widget_layout.num_images_cbox.count() > 3:
self.acq_widget_layout.num_images_cbox.removeItem(4)
if num_images is 1:
self.acq_widget_layout.num_images_cbox.setCurrentIndex(0)
elif num_images is 2:
self.acq_widget_layout.num_images_cbox.setCurrentIndex(1)
elif num_images is 4:
self.acq_widget_layout.num_images_cbox.setCurrentIndex(2)
else:
self.acq_widget_layout.num_images_cbox.addItem(str(num_images))
self.acq_widget_layout.num_images_cbox.setCurrenIndex(3)
self._path_template.num_files = num_images
def use_mad(self, state):
pass
def get_mad_energy(self):
pass
def set_energies(self, energy_scan_result):
pass
def energy_selected(self, index):
pass
def init_limits(self):
limits_dict = HWR.beamline.acquisition_limit_values
tpl = limits_dict.get("osc_range")
if tpl:
self.osc_start_validator.setRange(tpl[0], tpl[1], 4)
self.osc_range_validator.setRange(tpl[0], tpl[1], 4)
self._acquisition_mib.bind_value_update(
"osc_start",
self.acq_widget_layout.osc_start_ledit,
float,
self.osc_start_validator,
)
self._acquisition_mib.bind_value_update(
"osc_range",
self.acq_widget_layout.osc_range_ledit,
float,
self.osc_range_validator,
)
tpl = limits_dict.get("kappa")
if tpl:
self.kappa_validator.setRange(tpl[0], tpl[1], 4)
self._acquisition_mib.bind_value_update(
"kappa", self.acq_widget_layout.kappa_ledit, float,
self.kappa_validator)
tpl = limits_dict.get("kappa_phi")
if tpl:
self.kappa_phi_validator.setRange(tpl[0], tpl[1], 4)
self._acquisition_mib.bind_value_update(
"kappa_phi",
self.acq_widget_layout.kappa_phi_ledit,
float,
self.kappa_phi_validator,
)
tpl = limits_dict.get("exposure_time")
if tpl:
self.exp_time_validator.setRange(tpl[0], tpl[1], 6)
self._acquisition_mib.bind_value_update(
"exp_time",
self.acq_widget_layout.exp_time_ledit,
float,
self.exp_time_validator,
)
self._acquisition_mib.bind_value_update(
"energy", self.acq_widget_layout.energy_ledit, float,
self.energy_validator)
self.acq_widget_layout.energy_ledit.setToolTip(
"Energy limits %0.3f : %0.3f" %
(self.energy_validator.bottom(), self.energy_validator.top()))
self._acquisition_mib.bind_value_update(
"transmission",
self.acq_widget_layout.transmission_ledit,
float,
self.transmission_validator,
)
self._acquisition_mib.bind_value_update(
"resolution",
self.acq_widget_layout.resolution_ledit,
float,
self.resolution_validator,
)
if HWR.beamline.diffractometer.in_plate_mode():
self.acq_widget_layout.num_images_cbox.clear()
self.acq_widget_layout.num_images_cbox.addItem("1")
self.acq_widget_layout.num_images_cbox.setCurrentIndex(0)
def set_energy(self, energy, wav):
if not self.acq_widget_layout.energy_ledit.hasFocus():
self.acq_widget_layout.energy_ledit.setText(str(energy))
def update_transmission(self, transmission):
if self.acq_widget_layout.transmission_ledit.hasFocus():
self.acq_widget_layout.transmission_ledit.setText(
str(transmission))
def update_resolution(self, resolution):
if not self.acq_widget_layout.resolution_ledit.hasFocus():
self.acq_widget_layout.resolution_ledit.setText(str(resolution))
def update_energy_limits(self, limits):
if limits:
self.energy_validator.setBottom(limits[0])
self.energy_validator.setTop(limits[1])
self.acq_widget_layout.energy_ledit.setToolTip(
"Energy limits %0.3f : %0.3f" % (limits[0], limits[1]))
self._acquisition_mib.validate_all()
def update_transmission_limits(self, limits):
if limits:
self.transmission_validator.setBottom(limits[0])
self.transmission_validator.setTop(limits[1])
self.acq_widget_layout.transmission_ledit.setToolTip(
"Transmission limits %0.3f : %0.3f" % (limits[0], limits[1]))
self._acquisition_mib.validate_all()
def update_resolution_limits(self, limits):
if limits:
self.resolution_validator.setBottom(limits[0])
self.resolution_validator.setTop(limits[1])
self.acq_widget_layout.resolution_ledit.setToolTip(
"Resolution limits %0.3f : %0.3f" % (limits[0], limits[1]))
self._acquisition_mib.validate_all()
def update_detector_exp_time_limits(self, limits):
if limits:
self.exp_time_validator.setBottom(limits[0])
self.exp_time_validator.setTop(limits[1])
self.acq_widget_layout.exp_time_ledit.setToolTip(
"Exposure time limits %0.3f : %0.3f" % (limits[0], limits[1]))
self._acquisition_mib.validate_all()
def update_energy(self, energy):
if ("energy" not in self.value_changed_list
and not self.acq_widget_layout.energy_ledit.hasFocus()):
self.acq_widget_layout.energy_ledit.setText("%.4f" % float(energy))
def init_detector_roi_modes(self):
roi_modes = HWR.beamline.detector.get_roi_modes()
if (len(roi_modes) > 0 and
self.acq_widget_layout.detector_roi_mode_combo.count() == 0):
for roi_mode in roi_modes:
self.acq_widget_layout.detector_roi_mode_combo.addItem(
roi_mode)
self.acq_widget_layout.detector_roi_mode_label.setEnabled(True)
self.acq_widget_layout.detector_roi_mode_combo.setEnabled(True)
def update_exp_time_limits(self):
try:
exp_time_limits = (
HWR.beamline.detector.get_exposure_time_limits())
max_osc_speed = HWR.beamline.diffractometer.get_osc_max_speed()
top_limit = (float(self.acq_widget_layout.osc_range_ledit.text()) /
max_osc_speed)
limits = (max(exp_time_limits[0], top_limit), exp_time_limits[1])
self.update_detector_exp_time_limits(limits)
except BaseException:
pass
def update_detector_roi_mode(self, roi_mode_index):
if (roi_mode_index is not None and
self.acq_widget_layout.detector_roi_mode_combo.count() > 0):
self.acq_widget_layout.detector_roi_mode_combo.setCurrentIndex(
roi_mode_index)
def update_osc_range_limits(self, limits=None):
pass
def detector_roi_mode_changed(self, roi_mode_index):
HWR.beamline.detector.set_roi_mode(roi_mode_index)
def update_data_model(self, acquisition_parameters, path_template):
self._acquisition_parameters = acquisition_parameters
self._acquisition_mib.set_model(acquisition_parameters)
self._path_template = path_template
self.update_num_images(None, acquisition_parameters.num_images)
def set_tunable_energy(self, state):
self.acq_widget_layout.energy_ledit.setEnabled(state)
def use_osc_start(self, state):
self.acq_widget_layout.osc_start_ledit.setEnabled(state)
def check_parameter_conflict(self):
return self._acquisition_mib.validate_all()
def __init__(self, parent=None, name="", fl=0, data_model=None, layout=None):
qt_import.QWidget.__init__(self, parent, qt_import.Qt.WindowFlags(fl))
if name is not None:
self.setObjectName(name)
self.parent = parent
# Hardware objects ----------------------------------------------------
# Internal variables --------------------------------------------------
self._base_image_dir = ""
self._base_process_dir = ""
self.path_conflict_state = False
self.enable_macros = False
if data_model is None:
self._data_model = queue_model_objects.PathTemplate()
else:
self._data_model = data_model
self._data_model_pm = DataModelInputBinder(self._data_model)
# Graphic elements ----------------------------------------------------
if layout == "vertical":
self.data_path_layout = qt_import.load_ui_file(
"data_path_widget_vertical_layout.ui"
)
else:
self.data_path_layout = qt_import.load_ui_file(
"data_path_widget_horizontal_layout.ui"
)
# Layout --------------------------------------------------------------
_main_vlayout = qt_import.QVBoxLayout(self)
_main_vlayout.addWidget(self.data_path_layout)
_main_vlayout.setSpacing(0)
_main_vlayout.setContentsMargins(0, 0, 0, 0)
# Qt signal/slot connections ------------------------------------------
self.data_path_layout.prefix_ledit.textChanged.connect(
self._prefix_ledit_change
)
self.data_path_layout.run_number_ledit.textChanged.connect(
self._run_number_ledit_change
)
self.data_path_layout.browse_button.clicked.connect(self._browse_clicked)
self.data_path_layout.folder_ledit.textChanged.connect(
self._folder_ledit_change
)
self.data_path_layout.compression_cbox.clicked.connect(
self._compression_toggled
)
# Other ---------------------------------------------------------------
self._data_model_pm.bind_value_update(
"base_prefix", self.data_path_layout.prefix_ledit, str, None
)
self._data_model_pm.bind_value_update(
"run_number",
self.data_path_layout.run_number_ledit,
int,
qt_import.QIntValidator(0, 1000, self),
)
self._data_model_pm.bind_value_update(
"compression", self.data_path_layout.compression_cbox, bool, None
)
def __init__(
self,
parent=None,
name=None,
fl=0,
acq_params=None,
path_template=None,
layout="horizontal",
):
qt_import.QWidget.__init__(self, parent, qt_import.Qt.WindowFlags(fl))
if name is not None:
self.setObjectName(name)
# Hardware objects ----------------------------------------------------
# Internal variables --------------------------------------------------
self.previous_energy = 0
# If the acq. widget is used with grids then total osc range is not
# equal to num_images * osc_range, but num_images_per_line * osc_range
# For grids the osc total range is updated when a grid is selected
self.grid_mode = False
# Properties ----------------------------------------------------------
# Signals -------------------------------------------------------------
# Slots ---------------------------------------------------------------
# Graphic elements ----------------------------------------------------
if acq_params is None:
self._acquisition_parameters = queue_model_objects.AcquisitionParameters()
else:
self._acquisition_parameters = acq_params
if path_template is None:
self._path_template = queue_model_objects.PathTemplate()
else:
self._path_template = path_template
self._acquisition_mib = DataModelInputBinder(self._acquisition_parameters)
if layout == "horizontal":
self.acq_widget_layout = qt_import.load_ui_file(
"acquisition_widget_horizontal_layout.ui"
)
self.use_osc_start(False)
else:
self.acq_widget_layout = qt_import.load_ui_file(
"acquisition_widget_vertical_layout.ui"
)
# Layout --------------------------------------------------------------
__main_vlayout = qt_import.QVBoxLayout(self)
__main_vlayout.addWidget(self.acq_widget_layout)
__main_vlayout.setSpacing(0)
__main_vlayout.setContentsMargins(0, 0, 0, 0)
# SizePolicies --------------------------------------------------------
# Qt signal/slot connections ------------------------------------------
self.acq_widget_layout.osc_start_cbox.stateChanged.connect(self.fix_osc_start)
self.acq_widget_layout.exp_time_ledit.textChanged.connect(
self.exposure_time_ledit_changed
)
self.acq_widget_layout.exp_time_total_ledit.textEdited.connect(
self.exp_time_total_ledit_changed
)
self.acq_widget_layout.first_image_ledit.textChanged.connect(
self.first_image_ledit_change
)
self.acq_widget_layout.num_images_ledit.textChanged.connect(
self.num_images_ledit_change
)
self.acq_widget_layout.detector_roi_mode_combo.activated.connect(
self.detector_roi_mode_changed
)
self.acq_widget_layout.energies_combo.activated.connect(self.energy_selected)
self.acq_widget_layout.mad_cbox.toggled.connect(self.use_mad)
self.acq_widget_layout.osc_start_ledit.textEdited.connect(
self.osc_start_ledit_changed
)
self.acq_widget_layout.osc_range_ledit.textEdited.connect(
self.osc_range_per_frame_ledit_changed
)
self.acq_widget_layout.osc_total_range_ledit.textEdited.connect(
self.osc_total_range_ledit_changed
)
self.acq_widget_layout.energy_ledit.textEdited.connect(
self.energy_ledit_changed
)
self.acq_widget_layout.transmission_ledit.textEdited.connect(
self.transmission_ledit_changed
)
self.acq_widget_layout.resolution_ledit.textEdited.connect(
self.resolution_ledit_changed
)
self.acq_widget_layout.kappa_ledit.textEdited.connect(self.kappa_ledit_changed)
self.acq_widget_layout.kappa_phi_ledit.textEdited.connect(
self.kappa_phi_ledit_changed
)
if self.acq_widget_layout.findChild(qt_import.QLineEdit, "overlap_ledit"):
self.acq_widget_layout.overlap_ledit.textChanged.connect(
self.overlap_changed
)
if self.acq_widget_layout.findChild(qt_import.QCheckBox, "max_osc_range_cbx"):
self.acq_widget_layout.max_osc_range_cbx.toggled.connect(
self.max_osc_range_toggled
)
# Other ---------------------------------------------------------------
self.value_changed_list = []
self.acq_widget_layout.energies_combo.setDisabled(True)
self.acq_widget_layout.energies_combo.addItems(
["ip: -", "pk: -", "rm1: -", "rm2: -"]
)
self.osc_start_validator = qt_import.QDoubleValidator(
-10000, 10000, 4, self.acq_widget_layout.osc_start_ledit
)
self.osc_range_per_frame_validator = qt_import.QDoubleValidator(
0, 10000, 4, self.acq_widget_layout.osc_range_ledit
)
self.osc_total_range_validator = qt_import.QDoubleValidator(
0, 10000, 4, self.acq_widget_layout.osc_total_range_ledit
)
self.kappa_validator = qt_import.QDoubleValidator(
-0.01, 360, 4, self.acq_widget_layout.kappa_ledit
)
self.kappa_phi_validator = qt_import.QDoubleValidator(
-360, 360, 4, self.acq_widget_layout.kappa_phi_ledit
)
self.energy_validator = qt_import.QDoubleValidator(
4, 25, 5, self.acq_widget_layout.energy_ledit
)
self.resolution_validator = qt_import.QDoubleValidator(
0, 15, 3, self.acq_widget_layout.resolution_ledit
)
self.transmission_validator = qt_import.QDoubleValidator(
0, 100, 3, self.acq_widget_layout.transmission_ledit
)
self.exp_time_validator = qt_import.QDoubleValidator(
0.0001, 10000, 7, self.acq_widget_layout.exp_time_ledit
)
self.first_img_validator = qt_import.QIntValidator(
0, 99999, self.acq_widget_layout.first_image_ledit
)
self.num_img_validator = qt_import.QIntValidator(
1, 9999999, self.acq_widget_layout.num_images_ledit
)
self.acq_widget_layout.detector_roi_mode_label.setEnabled(False)
self.acq_widget_layout.detector_roi_mode_combo.setEnabled(False)
self.init_limits()
class XrayImagingParametersWidget(qt_import.QWidget):
def __init__(self, parent=None, name=None, fl=0, xray_imaging_params=None):
qt_import.QWidget.__init__(self, parent, qt_import.Qt.WindowFlags(fl))
if name is not None:
self.setObjectName(name)
# Internal variables --------------------------------------------------
# Properties ----------------------------------------------------------
# Signals -------------------------------------------------------------
# Slots ---------------------------------------------------------------
# Graphic elements ----------------------------------------------------
self._xray_imaging_parameters = xray_imaging_params
self._xray_imaging_mib = DataModelInputBinder(
self._xray_imaging_parameters)
self._parameters_widget = qt_import.load_ui_file(
"xray_imaging_parameters_widget_layout.ui")
# Layout --------------------------------------------------------------
__main_vlayout = qt_import.QVBoxLayout(self)
__main_vlayout.addWidget(self._parameters_widget)
__main_vlayout.setSpacing(0)
__main_vlayout.setContentsMargins(0, 0, 0, 0)
# SizePolicies --------------------------------------------------------
# Qt signal/slot connections ------------------------------------------
self._parameters_widget.ff_pre_cbox.toggled.connect(
self.ff_pre_toggled)
self._parameters_widget.ff_post_cbox.toggled.connect(
self.ff_post_toggled)
self._parameters_widget.add_button.pressed.connect(
self.add_distance_pressed)
self._parameters_widget.remove_button.pressed.connect(
self.remove_distance_pressed)
# Other ---------------------------------------------------------------
# self.detector_distance_validator = qt_import.QIntValidator(
# 0, 99999, self._parameters_widget.detector_distance_ledit
# )
self.detector_distance_validator = qt_import.QDoubleValidator(
0, 99999, 2, self._parameters_widget.detector_distance_ledit)
self._xray_imaging_mib.bind_value_update(
"camera_write_data", self._parameters_widget.store_data_cbox, bool,
None)
self._xray_imaging_mib.bind_value_update(
"ff_pre", self._parameters_widget.ff_pre_cbox, bool, None)
self._xray_imaging_mib.bind_value_update(
"ff_post", self._parameters_widget.ff_post_cbox, bool, None)
self._xray_imaging_mib.bind_value_update(
"ff_apply", self._parameters_widget.ff_apply_cbox, bool, None)
self._xray_imaging_mib.bind_value_update(
"ff_ssim_enabled", self._parameters_widget.ff_ssim_cbox, bool,
None)
self._xray_imaging_mib.bind_value_update(
"ff_num_images", self._parameters_widget.ff_num_images_ledit, int,
None)
self._xray_imaging_mib.bind_value_update(
"sample_offset_a",
self._parameters_widget.ff_offset_a_ledit,
float,
None,
)
self._xray_imaging_mib.bind_value_update(
"sample_offset_b",
self._parameters_widget.ff_offset_b_ledit,
float,
None,
)
self._xray_imaging_mib.bind_value_update(
"sample_offset_c",
self._parameters_widget.ff_offset_c_ledit,
float,
None,
)
self._xray_imaging_mib.bind_value_update(
"detector_distance",
self._parameters_widget.detector_distance_ledit,
float,
self.detector_distance_validator,
)
def ff_pre_toggled(self, state):
self.toggle_ff_controls()
def ff_post_toggled(self, state):
self.toggle_ff_controls()
def toggle_ff_controls(self):
enable_ff_controls = self._parameters_widget.ff_pre_cbox.isChecked() or \
self._parameters_widget.ff_post_cbox.isChecked()
self._parameters_widget.ff_apply_cbox.setEnabled(enable_ff_controls)
self._parameters_widget.ff_ssim_cbox.setEnabled(enable_ff_controls)
self._parameters_widget.ff_num_images_label.setEnabled(
enable_ff_controls)
self._parameters_widget.ff_num_images_ledit.setEnabled(
enable_ff_controls)
self._parameters_widget.ff_offset_a_label.setEnabled(
enable_ff_controls)
self._parameters_widget.ff_offset_a_ledit.setEnabled(
enable_ff_controls)
self._parameters_widget.ff_offset_b_label.setEnabled(
enable_ff_controls)
self._parameters_widget.ff_offset_b_ledit.setEnabled(
enable_ff_controls)
self._parameters_widget.ff_offset_c_label.setEnabled(
enable_ff_controls)
self._parameters_widget.ff_offset_c_ledit.setEnabled(
enable_ff_controls)
def add_distance_pressed(self):
if str(self._parameters_widget.detector_distance_ledit.text()).isdigit:
self._parameters_widget.detector_distance_listwidget.addItem(
self._parameters_widget.detector_distance_ledit.text())
self._parameters_widget.remove_button.setEnabled(True)
self._parameters_widget.detector_distance_listwidget.setCurrentRow(
self._parameters_widget.detector_distance_listwidget.count() -
1)
def remove_distance_pressed(self):
self._parameters_widget.detector_distance_listwidget.takeItem(
self._parameters_widget.detector_distance_listwidget.currentRow())
self._parameters_widget.remove_button.setEnabled(
self._parameters_widget.detector_distance_listwidget.count > 0)
def enable_distance_tools(self, state):
self._parameters_widget.add_button.setEnabled(state)
self._parameters_widget.remove_button.setEnabled(state)
self._parameters_widget.detector_distance_listwidget.setEnabled(state)
def set_detector_distance(self, value):
self._parameters_widget.detector_distance_ledit.setText("%d" % value)
self._xray_imaging_parameters.detector_distance = value
def populate_widget(self, item):
xray_imaging_params = item.get_model().xray_imaging_parameters
self.update_data_model(xray_imaging_params)
def update_data_model(self, xray_imaging_params):
self._xray_imaging_parameters = xray_imaging_params
self._xray_imaging_mib.set_model(xray_imaging_params)
def __init__(self, parent=None, name="char_parameter_widget"):
qt_import.QWidget.__init__(self, parent)
if name is not None:
self.setObjectName(name)
# Hardware objects ----------------------------------------------------
# Internal variables --------------------------------------------------
self._char = None
self._char_params = queue_model_objects.CharacterisationParameters()
self._char_params_mib = DataModelInputBinder(self._char_params)
self._tree_view_item = None
self.previous_energy = None
self.add_dc_cb = None
# Graphic elements ----------------------------------------------------
main_widget = qt_import.QWidget(self)
rone_widget = qt_import.QWidget(main_widget)
self.reference_img_widget = ReferenceImageWidget(rone_widget)
self.acq_widget = self.reference_img_widget.acq_widget
self.path_widget = self.reference_img_widget.path_widget
self.position_widget = qt_import.load_ui_file(
"snapshot_widget_layout.ui")
self.position_widget.setMinimumSize(450, 340)
rtwo_widget = qt_import.QWidget(main_widget)
self.char_type_widget = CharTypeWidget(rtwo_widget)
self.routine_dc_widget = self.char_type_widget.routine_dc_page
self.sad_widget = self.char_type_widget.sad_page
self.rad_dmg_char_widget = self.char_type_widget.rad_damage_page
self.opt_parameters_widget = OptimisationParametersWidgetLayout(self)
rtree_widget = qt_import.QWidget(main_widget)
self.rad_dmg_widget = qt_import.load_ui_file(
"radiation_damage_model_widget_layout.ui")
self.vertical_dimension_widget = qt_import.load_ui_file(
"vertical_crystal_dimension_widget_layout.ui")
# Layout --------------------------------------------------------------
rone_widget_layout = qt_import.QHBoxLayout(rone_widget)
rone_widget_layout.addWidget(self.reference_img_widget)
rone_widget_layout.addWidget(self.position_widget)
# rone_widget_layout.addStretch(0)
rone_widget_layout.setSpacing(2)
rone_widget_layout.setContentsMargins(0, 0, 0, 0)
rtwo_widget_layout = qt_import.QHBoxLayout(rtwo_widget)
rtwo_widget_layout.addWidget(self.char_type_widget)
rtwo_widget_layout.addWidget(self.opt_parameters_widget)
rtwo_widget_layout.addStretch(0)
rtwo_widget_layout.setSpacing(2)
rtwo_widget_layout.setContentsMargins(0, 0, 0, 0)
rtree_widget_layout = qt_import.QHBoxLayout(rtree_widget)
rtree_widget_layout.addWidget(self.rad_dmg_widget)
rtree_widget_layout.addWidget(self.vertical_dimension_widget)
rtree_widget_layout.addStretch(10)
rtree_widget_layout.setSpacing(2)
rtree_widget_layout.setContentsMargins(0, 0, 0, 0)
_main_widget_vlayout = qt_import.QVBoxLayout(main_widget)
_main_widget_vlayout.addWidget(rone_widget)
_main_widget_vlayout.addWidget(rtwo_widget)
_main_widget_vlayout.addWidget(rtree_widget)
_main_widget_vlayout.addStretch(10)
_main_widget_vlayout.setSpacing(2)
_main_widget_vlayout.setContentsMargins(0, 0, 0, 0)
_main_hlayout = qt_import.QHBoxLayout(self)
_main_hlayout.addWidget(main_widget)
_main_hlayout.setSpacing(0)
_main_hlayout.addStretch(0)
_main_hlayout.setContentsMargins(0, 0, 0, 0)
# SizePolicies -------------------------------------------------------
# Qt signal/slot connections ------------------------------------------
self.toggle_permitted_range(
self.opt_parameters_widget.opt_param_widget.permitted_range_cbx.
isChecked())
self.opt_parameters_widget.opt_param_widget.permitted_range_cbx.toggled.connect(
self.toggle_permitted_range)
# Other ---------------------------------------------------------------
self._char_params_mib.bind_value_update(
"min_dose",
self.routine_dc_widget.dose_ledit,
float,
qt_import.QDoubleValidator(0.0, 1000, 2, self),
)
self._char_params_mib.bind_value_update(
"min_time",
self.routine_dc_widget.time_ledit,
float,
qt_import.QDoubleValidator(0.0, 1000, 2, self),
)
self._char_params_mib.bind_value_update(
"use_min_dose", self.routine_dc_widget.min_dose_radio, bool, None)
self._char_params_mib.bind_value_update(
"use_min_time", self.routine_dc_widget.min_time_radio, bool, None)
self._char_params_mib.bind_value_update(
"account_rad_damage",
self.routine_dc_widget.radiation_damage_cbx,
bool,
None,
)
self._char_params_mib.bind_value_update(
"auto_res", self.sad_widget.automatic_resolution_radio, bool, None)
self._char_params_mib.bind_value_update(
"sad_res",
self.sad_widget.sad_resolution_ledit,
float,
qt_import.QDoubleValidator(0.5, 20, 3, self),
)
self._char_params_mib.bind_value_update(
"opt_sad", self.sad_widget.optimised_sad_cbx, bool, None)
self._char_params_mib.bind_value_update(
"determine_rad_params", self.rad_dmg_char_widget.rad_damage_cbx,
bool, None)
self._char_params_mib.bind_value_update(
"burn_osc_start",
self.rad_dmg_char_widget.burn_osc_start_ledit,
float,
qt_import.QDoubleValidator(0.0, 1000, 2, self),
)
self._char_params_mib.bind_value_update(
"burn_osc_interval",
self.rad_dmg_char_widget.burn_osc_interval_ledit,
float,
qt_import.QDoubleValidator(0.0, 1000, 2, self),
)
self._char_params_mib.bind_value_update(
"use_aimed_resolution",
self.opt_parameters_widget.opt_param_widget.maximum_res_cbx,
bool,
None,
)
self._char_params_mib.bind_value_update(
"use_aimed_multiplicity",
self.opt_parameters_widget.opt_param_widget.aimed_mult_cbx,
bool,
None,
)
self._char_params_mib.bind_value_update(
"aimed_resolution",
self.opt_parameters_widget.opt_param_widget.maximum_res_ledit,
float,
qt_import.QDoubleValidator(0.01, 1000, 2, self),
)
self._char_params_mib.bind_value_update(
"aimed_multiplicity",
self.opt_parameters_widget.opt_param_widget.aimed_mult_ledit,
float,
qt_import.QDoubleValidator(0.01, 1000, 2, self),
)
self._char_params_mib.bind_value_update(
"aimed_i_sigma",
self.opt_parameters_widget.opt_param_widget.i_over_sigma_ledit,
float,
qt_import.QDoubleValidator(0.01, 1000, 2, self),
)
self._char_params_mib.bind_value_update(
"aimed_completness",
self.opt_parameters_widget.opt_param_widget.aimed_comp_ledit,
float,
qt_import.QDoubleValidator(0.01, 1000, 2, self),
)
self._char_params_mib.bind_value_update(
"strategy_complexity",
self.opt_parameters_widget.opt_param_widget.start_comp_cbox,
int,
None,
)
self._char_params_mib.bind_value_update(
"use_permitted_rotation",
self.opt_parameters_widget.opt_param_widget.permitted_range_cbx,
bool,
None,
)
self._char_params_mib.bind_value_update(
"permitted_phi_start",
self.opt_parameters_widget.opt_param_widget.phi_start_ledit,
float,
qt_import.QDoubleValidator(0.0, 1000, 2, self),
)
self._char_params_mib.bind_value_update(
"permitted_phi_end",
self.opt_parameters_widget.opt_param_widget.phi_end_ledit,
float,
qt_import.QDoubleValidator(0.0, 1000, 2, self),
)
self._char_params_mib.bind_value_update(
"low_res_pass_strat",
self.opt_parameters_widget.opt_param_widget.low_res_pass_cbx,
bool,
None,
)
self._char_params_mib.bind_value_update(
"rad_suscept",
self.rad_dmg_widget.sensetivity_ledit,
float,
qt_import.QDoubleValidator(0.0, 1000, 2, self),
)
self._char_params_mib.bind_value_update(
"beta",
self.rad_dmg_widget.beta_over_gray_ledit,
float,
qt_import.QDoubleValidator(0.0, 1000, 2, self),
)
self._char_params_mib.bind_value_update(
"gamma",
self.rad_dmg_widget.gamma_over_gray_ledit,
float,
qt_import.QDoubleValidator(0.0, 1000, 2, self),
)
self._char_params_mib.bind_value_update(
"max_crystal_vdim",
self.vertical_dimension_widget.max_vdim_ledit,
float,
qt_import.QDoubleValidator(0.0, 1000, 2, self),
)
self._char_params_mib.bind_value_update(
"min_crystal_vdim",
self.vertical_dimension_widget.min_vdim_ledit,
float,
qt_import.QDoubleValidator(0.0, 1000, 2, self),
)
self._char_params_mib.bind_value_update(
"min_crystal_vphi",
self.vertical_dimension_widget.min_vphi_ledit,
float,
qt_import.QDoubleValidator(0.0, 1000, 2, self),
)
self._char_params_mib.bind_value_update(
"max_crystal_vphi",
self.vertical_dimension_widget.max_vphi_ledit,
float,
qt_import.QDoubleValidator(0.0, 1000, 2, self),
)
# self._char_params_mib.bind_value_update('space_group',
# self.vertical_dimension_widget.space_group_ledit,
# str,
# None)
self.vertical_dimension_widget.space_group_ledit.addItems(
queue_model_enumerables.XTAL_SPACEGROUPS)
self.char_type_widget.charact_type_tbox.currentChanged.connect(
self.update_char_type)
self.rad_dmg_char_widget.rad_damage_cbx.toggled.connect(
self.enable_opt_parameters_widget)
self.opt_parameters_widget.opt_param_widget.maximum_res_cbx.toggled.connect(
self.enable_maximum_res_ledit)
self.opt_parameters_widget.opt_param_widget.aimed_mult_cbx.toggled.connect(
self.enable_aimed_mult_ledit)
self.path_widget.data_path_layout.prefix_ledit.textChanged.connect(
self._prefix_ledit_change)
self.path_widget.data_path_layout.run_number_ledit.textChanged.connect(
self._run_number_ledit_change)
self.vertical_dimension_widget.space_group_ledit.activated.connect(
self._space_group_change)
class AcquisitionWidget(qt_import.QWidget):
acqParametersChangedSignal = qt_import.pyqtSignal(list)
madEnergySelectedSignal = qt_import.pyqtSignal(str, float, bool)
def __init__(
self,
parent=None,
name=None,
fl=0,
acq_params=None,
path_template=None,
layout="horizontal",
):
qt_import.QWidget.__init__(self, parent, qt_import.Qt.WindowFlags(fl))
if name is not None:
self.setObjectName(name)
# Hardware objects ----------------------------------------------------
# Internal variables --------------------------------------------------
self.previous_energy = 0
# If the acq. widget is used with grids then total osc range is not
# equal to num_images * osc_range, but num_images_per_line * osc_range
# For grids the osc total range is updated when a grid is selected
self.grid_mode = False
# Properties ----------------------------------------------------------
# Signals -------------------------------------------------------------
# Slots ---------------------------------------------------------------
# Graphic elements ----------------------------------------------------
if acq_params is None:
self._acquisition_parameters = queue_model_objects.AcquisitionParameters()
else:
self._acquisition_parameters = acq_params
if path_template is None:
self._path_template = queue_model_objects.PathTemplate()
else:
self._path_template = path_template
self._acquisition_mib = DataModelInputBinder(self._acquisition_parameters)
if layout == "horizontal":
self.acq_widget_layout = qt_import.load_ui_file(
"acquisition_widget_horizontal_layout.ui"
)
self.use_osc_start(False)
else:
self.acq_widget_layout = qt_import.load_ui_file(
"acquisition_widget_vertical_layout.ui"
)
# Layout --------------------------------------------------------------
__main_vlayout = qt_import.QVBoxLayout(self)
__main_vlayout.addWidget(self.acq_widget_layout)
__main_vlayout.setSpacing(0)
__main_vlayout.setContentsMargins(0, 0, 0, 0)
# SizePolicies --------------------------------------------------------
# Qt signal/slot connections ------------------------------------------
self.acq_widget_layout.osc_start_cbox.stateChanged.connect(self.fix_osc_start)
self.acq_widget_layout.exp_time_ledit.textChanged.connect(
self.exposure_time_ledit_changed
)
self.acq_widget_layout.exp_time_total_ledit.textEdited.connect(
self.exp_time_total_ledit_changed
)
self.acq_widget_layout.first_image_ledit.textChanged.connect(
self.first_image_ledit_change
)
self.acq_widget_layout.num_images_ledit.textChanged.connect(
self.num_images_ledit_change
)
self.acq_widget_layout.detector_roi_mode_combo.activated.connect(
self.detector_roi_mode_changed
)
self.acq_widget_layout.energies_combo.activated.connect(self.energy_selected)
self.acq_widget_layout.mad_cbox.toggled.connect(self.use_mad)
self.acq_widget_layout.osc_start_ledit.textEdited.connect(
self.osc_start_ledit_changed
)
self.acq_widget_layout.osc_range_ledit.textEdited.connect(
self.osc_range_per_frame_ledit_changed
)
self.acq_widget_layout.osc_total_range_ledit.textEdited.connect(
self.osc_total_range_ledit_changed
)
self.acq_widget_layout.energy_ledit.textEdited.connect(
self.energy_ledit_changed
)
self.acq_widget_layout.transmission_ledit.textEdited.connect(
self.transmission_ledit_changed
)
self.acq_widget_layout.resolution_ledit.textEdited.connect(
self.resolution_ledit_changed
)
self.acq_widget_layout.kappa_ledit.textEdited.connect(self.kappa_ledit_changed)
self.acq_widget_layout.kappa_phi_ledit.textEdited.connect(
self.kappa_phi_ledit_changed
)
if self.acq_widget_layout.findChild(qt_import.QLineEdit, "overlap_ledit"):
self.acq_widget_layout.overlap_ledit.textChanged.connect(
self.overlap_changed
)
if self.acq_widget_layout.findChild(qt_import.QCheckBox, "max_osc_range_cbx"):
self.acq_widget_layout.max_osc_range_cbx.toggled.connect(
self.max_osc_range_toggled
)
# Other ---------------------------------------------------------------
self.value_changed_list = []
self.acq_widget_layout.energies_combo.setDisabled(True)
self.acq_widget_layout.energies_combo.addItems(
["ip: -", "pk: -", "rm1: -", "rm2: -"]
)
self.osc_start_validator = qt_import.QDoubleValidator(
-10000, 10000, 4, self.acq_widget_layout.osc_start_ledit
)
self.osc_range_per_frame_validator = qt_import.QDoubleValidator(
0, 10000, 4, self.acq_widget_layout.osc_range_ledit
)
self.osc_total_range_validator = qt_import.QDoubleValidator(
0, 10000, 4, self.acq_widget_layout.osc_total_range_ledit
)
self.kappa_validator = qt_import.QDoubleValidator(
-0.01, 360, 4, self.acq_widget_layout.kappa_ledit
)
self.kappa_phi_validator = qt_import.QDoubleValidator(
-360, 360, 4, self.acq_widget_layout.kappa_phi_ledit
)
self.energy_validator = qt_import.QDoubleValidator(
4, 25, 5, self.acq_widget_layout.energy_ledit
)
self.resolution_validator = qt_import.QDoubleValidator(
0, 15, 3, self.acq_widget_layout.resolution_ledit
)
self.transmission_validator = qt_import.QDoubleValidator(
0, 100, 3, self.acq_widget_layout.transmission_ledit
)
self.exp_time_validator = qt_import.QDoubleValidator(
0.0001, 10000, 7, self.acq_widget_layout.exp_time_ledit
)
self.first_img_validator = qt_import.QIntValidator(
0, 99999, self.acq_widget_layout.first_image_ledit
)
self.num_img_validator = qt_import.QIntValidator(
1, 9999999, self.acq_widget_layout.num_images_ledit
)
self.acq_widget_layout.detector_roi_mode_label.setEnabled(False)
self.acq_widget_layout.detector_roi_mode_combo.setEnabled(False)
self.init_limits()
def use_max_osc_range(self, state):
self.acq_widget_layout.max_osc_range_cbx.setEnabled(state)
def fix_osc_start(self, state):
"""
Fix osc start, so the lineEdit do not change when osc is changed
"""
self.acq_widget_layout.osc_start_ledit.setEnabled(state)
def update_osc_start(self, new_value):
"""
Updates osc line edit
"""
if (
"osc_start" not in self.value_changed_list
and not self.acq_widget_layout.osc_start_ledit.hasFocus()
and not self.acq_widget_layout.osc_start_cbox.isChecked()
):
osc_start_value = 0
try:
osc_start_value = round(float(new_value), 2)
except TypeError:
pass
self.acq_widget_layout.osc_start_ledit.setText(str(osc_start_value))
self._acquisition_parameters.osc_start = osc_start_value
# self.update_osc_total_range_limits()
# self.update_num_images_limits()
def osc_start_ledit_changed(self, osc_start):
"""Fixes osc start edit"""
if "osc_start" not in self.value_changed_list:
self.value_changed_list.append("osc_start")
self.update_osc_total_range_limits()
self.update_num_images_limits()
self.emit_acq_parameters_changed()
def update_osc_start_limits(self):
"""In the plate mode sets osc start limits"""
self.update_osc_total_range_limits()
self.update_num_images_limits()
def osc_range_per_frame_ledit_changed(self, new_value):
self.update_osc_total_range()
self.update_num_images_limits()
self.update_exp_time_limits()
self.emit_acq_parameters_changed()
def update_osc_range_per_frame_limits(self):
try:
max_osc_speed = HWR.beamline.diffractometer.get_osc_max_speed()
top_limit = max_osc_speed * float(
self.acq_widget_layout.exp_time_ledit.text()
)
self.osc_range_per_frame_validator.setTop(top_limit)
tool_tip = (
"Oscillation range per frame limits 0 : "
+ "%0.4f\n4 digits precision." % top_limit
)
self.acq_widget_layout.osc_range_ledit.setToolTip(tool_tip)
self._acquisition_mib.validate_all()
except BaseException:
pass
def update_osc_total_range(self):
self.acq_widget_layout.osc_total_range_ledit.blockSignals(True)
if not self.grid_mode:
try:
self.acq_widget_layout.osc_total_range_ledit.setText(
"%0.2f" %
(
float(self.acq_widget_layout.osc_range_ledit.text())
* int(self.acq_widget_layout.num_images_ledit.text())
)
)
except BaseException:
pass
self.acq_widget_layout.osc_total_range_ledit.blockSignals(False)
def update_total_exp_time(self):
try:
self.acq_widget_layout.exp_time_total_ledit.setText(
"%.2f"
% (
float(self.acq_widget_layout.exp_time_ledit.text())
* float(self.acq_widget_layout.num_images_ledit.text())
)
)
except BaseException:
pass
def osc_total_range_ledit_changed(self, new_value):
if not self.grid_mode:
try:
num_images = int(
float(new_value)
/ float(self.acq_widget_layout.osc_range_ledit.text())
)
self.acq_widget_layout.num_images_ledit.blockSignals(True)
self.acq_widget_layout.num_images_ledit.setText("%d" % num_images)
self._acquisition_parameters.num_images = num_images
self.acq_widget_layout.num_images_ledit.blockSignals(False)
except BaseException:
pass
self.emit_acq_parameters_changed()
def exp_time_total_ledit_changed(self, new_value):
try:
exp_time = float(new_value) / float(self.acq_widget_layout.num_images_ledit.text())
self.acq_widget_layout.exp_time_ledit.blockSignals(True)
self.acq_widget_layout.exp_time_ledit.setText("%.4f" % exp_time)
self._acquisition_parameters.exp_time = exp_time
self.acq_widget_layout.exp_time_ledit.blockSignals(False)
except BaseException:
pass
self.emit_acq_parameters_changed()
def update_osc_total_range_limits(self, num_images=None):
"""Updates osc totol range. Limits are changed if a plate is used.
- For simple oscillation osc_range is defined by osc_start and
osc_start top limit.
- For mesh osc_range is defined by number of images per line
and osc in the middle of mesh
"""
if HWR.beamline.diffractometer.in_plate_mode():
if hasattr(self.parent(), "set_osc_total_range"):
self.parent().set_osc_total_range(num_images)
self._acquisition_mib.validate_all()
def update_exp_time_limits(self):
try:
exp_time_limits = (
HWR.beamline.detector.get_exposure_time_limits()
)
max_osc_speed = HWR.beamline.diffractometer.get_osc_max_speed()
top_limit = (
float(self.acq_widget_layout.osc_range_ledit.text()) / max_osc_speed
)
limits = (max(exp_time_limits[0], top_limit), exp_time_limits[1])
self.update_detector_exp_time_limits(limits)
except BaseException:
pass
def update_kappa(self, new_value):
if not self.acq_widget_layout.kappa_ledit.hasFocus() and new_value is not None:
self.acq_widget_layout.kappa_ledit.setText(str(new_value))
self.emit_acq_parameters_changed()
def update_kappa_phi(self, new_value):
if not self.acq_widget_layout.kappa_phi_ledit.hasFocus() and new_value:
self.acq_widget_layout.kappa_phi_ledit.setText(str(new_value))
self.emit_acq_parameters_changed()
def use_osc_start(self, state):
self.acq_widget_layout.osc_start_cbox.setVisible(state)
self.acq_widget_layout.osc_start_label.setVisible(not state)
self.acq_widget_layout.osc_start_ledit.setEnabled(not state)
def use_kappa(self, state):
if HWR.beamline.diffractometer is not None:
if HWR.beamline.diffractometer.in_plate_mode():
state = False
self.acq_widget_layout.kappa_label.setEnabled(state)
self.acq_widget_layout.kappa_ledit.setEnabled(state)
self.acq_widget_layout.kappa_phi_label.setEnabled(state)
self.acq_widget_layout.kappa_phi_ledit.setEnabled(state)
def init_limits(self):
limits_dict = HWR.beamline.acquisition_limit_values
tpl = limits_dict.get("osc_range")
if tpl:
self.osc_start_validator.setRange(tpl[0], tpl[1], 4)
self.osc_range_per_frame_validator.setRange(tpl[0], tpl[1], 4)
self.osc_total_range_validator.setRange(tpl[0], tpl[1], 4)
self._acquisition_mib.bind_value_update(
"osc_start",
self.acq_widget_layout.osc_start_ledit,
float,
self.osc_start_validator,
)
self._acquisition_mib.bind_value_update(
"osc_range",
self.acq_widget_layout.osc_range_ledit,
float,
self.osc_range_per_frame_validator,
)
self._acquisition_mib.bind_value_update(
"osc_total_range",
self.acq_widget_layout.osc_total_range_ledit,
float,
self.osc_total_range_validator,
)
tpl = limits_dict.get("kappa")
if tpl:
self.kappa_validator.setRange(tpl[0], tpl[1], 4)
self._acquisition_mib.bind_value_update(
"kappa", self.acq_widget_layout.kappa_ledit, float, self.kappa_validator
)
tpl = limits_dict.get("kappa_phi")
if tpl:
self.kappa_phi_validator.setRange(tpl[0], tpl[1], 4)
self._acquisition_mib.bind_value_update(
"kappa_phi",
self.acq_widget_layout.kappa_phi_ledit,
float,
self.kappa_phi_validator,
)
tpl = limits_dict.get("exposure_time")
if tpl:
self.exp_time_validator.setRange(tpl[0], tpl[1], 6)
self._acquisition_mib.bind_value_update(
"exp_time",
self.acq_widget_layout.exp_time_ledit,
float,
self.exp_time_validator,
)
tpl = limits_dict.get("number_of_images")
if tpl:
self.num_img_validator.setRange(tpl[0], tpl[1])
self.first_img_validator.setRange(tpl[0], tpl[1])
self._acquisition_mib.bind_value_update(
"first_image",
self.acq_widget_layout.first_image_ledit,
int,
self.first_img_validator,
)
self._acquisition_mib.bind_value_update(
"num_images",
self.acq_widget_layout.num_images_ledit,
int,
self.num_img_validator,
)
num_passes = self.acq_widget_layout.findChild(
qt_import.QLineEdit, "num_passes_ledit"
)
if num_passes:
self._acquisition_mib.bind_value_update(
"num_passes", num_passes, int, qt_import.QIntValidator(1, 1000, self)
)
overlap_ledit = self.acq_widget_layout.findChild(
qt_import.QLineEdit, "overlap_ledit"
)
if overlap_ledit:
self._acquisition_mib.bind_value_update(
"overlap",
overlap_ledit,
float,
qt_import.QDoubleValidator(-1000, 1000, 2, self),
)
self._acquisition_mib.bind_value_update(
"energy", self.acq_widget_layout.energy_ledit, float, self.energy_validator
)
self.update_energy_limits(
(self.energy_validator.bottom(), self.energy_validator.top())
)
self._acquisition_mib.bind_value_update(
"transmission",
self.acq_widget_layout.transmission_ledit,
float,
self.transmission_validator,
)
self.update_transmission_limits(
(self.transmission_validator.bottom(), self.transmission_validator.top())
)
self._acquisition_mib.bind_value_update(
"resolution",
self.acq_widget_layout.resolution_ledit,
float,
self.resolution_validator,
)
# self.update_resolution_limits((self.resolution_validator.bottom(),
# self.resolution_validator.top()))
self._acquisition_mib.bind_value_update(
"shutterless", self.acq_widget_layout.shutterless_cbx, bool, None
)
self.set_tunable_energy(HWR.beamline.tunable_wavelength)
has_shutter_less = HWR.beamline.detector.has_shutterless()
self.acq_widget_layout.shutterless_cbx.setEnabled(has_shutter_less)
self.acq_widget_layout.shutterless_cbx.setChecked(has_shutter_less)
if HWR.beamline.disable_num_passes:
num_passes = self.acq_widget_layout.findChild(
qt_import.QLineEdit, "num_passes_ledit"
)
if num_passes:
num_passes.setDisabled(True)
self.init_detector_roi_modes()
def first_image_ledit_change(self, new_value):
self.emit_acq_parameters_changed()
def exposure_time_ledit_changed(self, new_value):
"""If the exposure time changes we have to check the osc speed
and if necessary update osc range per frame
"""
self.update_osc_range_per_frame_limits()
self.update_osc_total_range_limits()
self.update_total_exp_time()
self.emit_acq_parameters_changed()
def num_images_ledit_change(self, new_value):
if str(new_value).isdigit():
# self._path_template.num_files = int(new_value)
self.update_osc_range_per_frame_limits()
self.update_osc_total_range_limits()
self.update_osc_total_range()
self.update_total_exp_time()
self.emit_acq_parameters_changed()
def overlap_changed(self, new_value):
if HWR.beamline.detector.has_shutterless():
try:
new_value = float(new_value)
except ValueError:
pass
if new_value != 0:
self.acq_widget_layout.shutterless_cbx.setEnabled(False)
self.acq_widget_layout.shutterless_cbx.setChecked(False)
self._acquisition_parameters.shutterless = False
else:
self.acq_widget_layout.shutterless_cbx.setEnabled(True)
self.acq_widget_layout.shutterless_cbx.setChecked(True)
self._acquisition_parameters.shutterless = True
def use_mad(self, state):
self.acq_widget_layout.energies_combo.setEnabled(state)
if state:
(name, energy) = self.get_mad_energy()
if energy != 0:
self.update_energy(energy)
self.madEnergySelectedSignal.emit(name, energy, state)
else:
self.update_energy(self.previous_energy)
# energy = HWR.beamline.energy.get_current_energy()
self.madEnergySelectedSignal.emit("", self.previous_energy, state)
def max_osc_range_toggled(self, state):
self.update_osc_total_range_limits()
def get_mad_energy(self):
energy_str = str(self.acq_widget_layout.energies_combo.currentText())
(name, value) = energy_str.split(":")
name = name.strip()
value = value.strip()
value = 0 if (value == "-") else float(value)
return (name, value)
def set_energies(self, energy_scan_result):
self.acq_widget_layout.energies_combo.clear()
inflection = (
("ip: %.4f" % energy_scan_result.inflection)
if energy_scan_result.inflection
else "ip: -"
)
peak = (
("pk: %.4f" % energy_scan_result.peak)
if energy_scan_result.peak
else "pk: -"
)
first_remote = (
("rm1: %.4f" % energy_scan_result.first_remote)
if energy_scan_result.first_remote
else "rm1: -"
)
second_remote = (
("rm2: %.4f" % energy_scan_result.second_remote)
if energy_scan_result.second_remote
else "rm2: -"
)
self.acq_widget_layout.energies_combo.addItems(
[inflection, peak, first_remote, second_remote]
)
def energy_selected(self, index):
if self.acq_widget_layout.mad_cbox.isChecked():
(name, energy) = self.get_mad_energy()
if energy != 0:
self.update_energy(energy)
self.madEnergySelectedSignal.emit(name, energy, True)
def energy_ledit_changed(self, new_value):
if "energy" not in self.value_changed_list:
self.value_changed_list.append("energy")
self.emit_acq_parameters_changed()
def update_energy(self, energy):
if (
"energy" not in self.value_changed_list
and not self.acq_widget_layout.energy_ledit.hasFocus()
):
self.acq_widget_layout.energy_ledit.setText(str(energy))
self.emit_acq_parameters_changed()
def transmission_ledit_changed(self, transmission):
if "transmission" not in self.value_changed_list:
self.value_changed_list.append("transmission")
self.emit_acq_parameters_changed()
def update_transmission(self, transmission):
if "transmission" not in self.value_changed_list:
self.acq_widget_layout.transmission_ledit.setText(str(transmission))
self.emit_acq_parameters_changed()
def resolution_ledit_changed(self, resolution):
if "resolution" not in self.value_changed_list:
self.value_changed_list.append("resolution")
self.emit_acq_parameters_changed()
def update_resolution(self, resolution):
if (
"resolution" not in self.value_changed_list
and not self.acq_widget_layout.resolution_ledit.hasFocus()
):
self.acq_widget_layout.resolution_ledit.setText(str(resolution))
self.emit_acq_parameters_changed()
def update_energy_limits(self, limits):
if limits:
self.energy_validator.setBottom(limits[0])
self.energy_validator.setTop(limits[1])
self.acq_widget_layout.energy_ledit.setToolTip(
"Energy limits %0.4f : %0.4f keV\n" % (limits[0], limits[1])
+ "4 digits precision."
)
self._acquisition_mib.validate_all()
def update_transmission_limits(self, limits):
if limits:
self.transmission_validator.setBottom(limits[0])
self.transmission_validator.setTop(limits[1])
self.acq_widget_layout.transmission_ledit.setToolTip(
"Transmission limits %0.2f : %0.2f %%\n" % (limits[0], limits[1])
+ "2 digits precision."
)
self._acquisition_mib.validate_all()
def update_resolution_limits(self, limits):
if limits:
self.resolution_validator.setBottom(limits[0])
self.resolution_validator.setTop(limits[1])
self.acq_widget_layout.resolution_ledit.setToolTip(
"Resolution limits %0.4f : %0.4f %s\n"
% (limits[0], limits[1], chr(197))
+ "4 digits precision."
)
self._acquisition_mib.validate_all()
def update_detector_exp_time_limits(self, limits):
if limits:
self.exp_time_validator.setRange(limits[0], limits[1], 6)
self.acq_widget_layout.exp_time_ledit.setToolTip(
"Exposure time limits %0.6f s : %0.1f s\n" % (limits[0], limits[1])
+ "6 digits precision."
)
self._acquisition_mib.validate_all()
def update_num_images_limits(self, num_images_limits=None):
"""Updates number of images limit. Method used if plate mode.
"""
self._acquisition_mib.validate_all()
return
if HWR.beamline.diffractometer.in_plate_mode():
if num_images_limits is None:
try:
osc_start = float(self.acq_widget_layout.osc_start_ledit.text())
osc_range = float(self.acq_widget_layout.osc_range_ledit.text())
except ValueError:
return
if osc_range == 0:
return
num_images_limits = int(
(self.osc_start_validator.top() - osc_start) / osc_range
)
self.num_img_validator.setTop(num_images_limits)
self.acq_widget_layout.num_images_ledit.setToolTip(
"Number of images limits : %d" % num_images_limits
)
self._acquisition_mib.validate_all()
def init_detector_roi_modes(self):
roi_modes = HWR.beamline.detector.get_roi_modes()
if (
len(roi_modes) > 0
and self.acq_widget_layout.detector_roi_mode_combo.count() == 0
):
for roi_mode in roi_modes:
self.acq_widget_layout.detector_roi_mode_combo.addItem(roi_mode)
self.acq_widget_layout.detector_roi_mode_label.setEnabled(True)
self.acq_widget_layout.detector_roi_mode_combo.setEnabled(True)
def update_detector_roi_mode(self, roi_mode_index):
if (
roi_mode_index is not None
and self.acq_widget_layout.detector_roi_mode_combo.count() > 0
):
self.acq_widget_layout.detector_roi_mode_combo.setCurrentIndex(
roi_mode_index
)
def detector_roi_mode_changed(self, roi_mode_index):
HWR.beamline.detector.set_roi_mode(roi_mode_index)
def kappa_ledit_changed(self, new_value):
if "kappa" not in self.value_changed_list:
self.value_changed_list.append("kappa")
self.emit_acq_parameters_changed()
def kappa_phi_ledit_changed(self, new_value):
if "kappa_phi" not in self.value_changed_list:
self.value_changed_list.append("kappa_phi")
self.emit_acq_parameters_changed()
def update_data_model(self, acquisition_parameters, path_template):
self._acquisition_parameters = acquisition_parameters
self._path_template = path_template
self._acquisition_mib.set_model(acquisition_parameters)
# Update mad widgets
mad = True if self._path_template.mad_prefix != "" else False
if mad:
mad_prefix = str(self._path_template.mad_prefix)
index = MAD_ENERGY_COMBO_NAMES[str(mad_prefix)]
self.acq_widget_layout.energies_combo.setCurrentIndex(index)
self.acq_widget_layout.mad_cbox.setChecked(True)
self.acq_widget_layout.energies_combo.setEnabled(True)
else:
self.acq_widget_layout.mad_cbox.setChecked(False)
self.acq_widget_layout.energies_combo.setEnabled(False)
self.acq_widget_layout.energies_combo.setCurrentIndex(0)
self.update_osc_total_range()
self.update_total_exp_time()
self.emit_acq_parameters_changed()
def set_tunable_energy(self, state):
self.acq_widget_layout.energy_ledit.setEnabled(state)
self.acq_widget_layout.mad_cbox.setEnabled(state)
self.acq_widget_layout.energies_combo.setEnabled(state)
def check_parameter_conflict(self):
return self._acquisition_mib.validate_all()
def emit_acq_parameters_changed(self):
self.acqParametersChangedSignal.emit(self._acquisition_mib.validate_all())
class CharParametersWidget(qt_import.QWidget):
def __init__(self, parent=None, name="char_parameter_widget"):
qt_import.QWidget.__init__(self, parent)
if name is not None:
self.setObjectName(name)
# Hardware objects ----------------------------------------------------
# Internal variables --------------------------------------------------
self._char = None
self._char_params = queue_model_objects.CharacterisationParameters()
self._char_params_mib = DataModelInputBinder(self._char_params)
self._tree_view_item = None
self.previous_energy = None
self.add_dc_cb = None
# Graphic elements ----------------------------------------------------
main_widget = qt_import.QWidget(self)
rone_widget = qt_import.QWidget(main_widget)
self.reference_img_widget = ReferenceImageWidget(rone_widget)
self.acq_widget = self.reference_img_widget.acq_widget
self.path_widget = self.reference_img_widget.path_widget
self.position_widget = qt_import.load_ui_file(
"snapshot_widget_layout.ui")
self.position_widget.setMinimumSize(450, 340)
rtwo_widget = qt_import.QWidget(main_widget)
self.char_type_widget = CharTypeWidget(rtwo_widget)
self.routine_dc_widget = self.char_type_widget.routine_dc_page
self.sad_widget = self.char_type_widget.sad_page
self.rad_dmg_char_widget = self.char_type_widget.rad_damage_page
self.opt_parameters_widget = OptimisationParametersWidgetLayout(self)
rtree_widget = qt_import.QWidget(main_widget)
self.rad_dmg_widget = qt_import.load_ui_file(
"radiation_damage_model_widget_layout.ui")
self.vertical_dimension_widget = qt_import.load_ui_file(
"vertical_crystal_dimension_widget_layout.ui")
# Layout --------------------------------------------------------------
rone_widget_layout = qt_import.QHBoxLayout(rone_widget)
rone_widget_layout.addWidget(self.reference_img_widget)
rone_widget_layout.addWidget(self.position_widget)
# rone_widget_layout.addStretch(0)
rone_widget_layout.setSpacing(2)
rone_widget_layout.setContentsMargins(0, 0, 0, 0)
rtwo_widget_layout = qt_import.QHBoxLayout(rtwo_widget)
rtwo_widget_layout.addWidget(self.char_type_widget)
rtwo_widget_layout.addWidget(self.opt_parameters_widget)
rtwo_widget_layout.addStretch(0)
rtwo_widget_layout.setSpacing(2)
rtwo_widget_layout.setContentsMargins(0, 0, 0, 0)
rtree_widget_layout = qt_import.QHBoxLayout(rtree_widget)
rtree_widget_layout.addWidget(self.rad_dmg_widget)
rtree_widget_layout.addWidget(self.vertical_dimension_widget)
rtree_widget_layout.addStretch(10)
rtree_widget_layout.setSpacing(2)
rtree_widget_layout.setContentsMargins(0, 0, 0, 0)
_main_widget_vlayout = qt_import.QVBoxLayout(main_widget)
_main_widget_vlayout.addWidget(rone_widget)
_main_widget_vlayout.addWidget(rtwo_widget)
_main_widget_vlayout.addWidget(rtree_widget)
_main_widget_vlayout.addStretch(10)
_main_widget_vlayout.setSpacing(2)
_main_widget_vlayout.setContentsMargins(0, 0, 0, 0)
_main_hlayout = qt_import.QHBoxLayout(self)
_main_hlayout.addWidget(main_widget)
_main_hlayout.setSpacing(0)
_main_hlayout.addStretch(0)
_main_hlayout.setContentsMargins(0, 0, 0, 0)
# SizePolicies -------------------------------------------------------
# Qt signal/slot connections ------------------------------------------
self.toggle_permitted_range(
self.opt_parameters_widget.opt_param_widget.permitted_range_cbx.
isChecked())
self.opt_parameters_widget.opt_param_widget.permitted_range_cbx.toggled.connect(
self.toggle_permitted_range)
# Other ---------------------------------------------------------------
self._char_params_mib.bind_value_update(
"min_dose",
self.routine_dc_widget.dose_ledit,
float,
qt_import.QDoubleValidator(0.0, 1000, 2, self),
)
self._char_params_mib.bind_value_update(
"min_time",
self.routine_dc_widget.time_ledit,
float,
qt_import.QDoubleValidator(0.0, 1000, 2, self),
)
self._char_params_mib.bind_value_update(
"use_min_dose", self.routine_dc_widget.min_dose_radio, bool, None)
self._char_params_mib.bind_value_update(
"use_min_time", self.routine_dc_widget.min_time_radio, bool, None)
self._char_params_mib.bind_value_update(
"account_rad_damage",
self.routine_dc_widget.radiation_damage_cbx,
bool,
None,
)
self._char_params_mib.bind_value_update(
"auto_res", self.sad_widget.automatic_resolution_radio, bool, None)
self._char_params_mib.bind_value_update(
"sad_res",
self.sad_widget.sad_resolution_ledit,
float,
qt_import.QDoubleValidator(0.5, 20, 3, self),
)
self._char_params_mib.bind_value_update(
"opt_sad", self.sad_widget.optimised_sad_cbx, bool, None)
self._char_params_mib.bind_value_update(
"determine_rad_params", self.rad_dmg_char_widget.rad_damage_cbx,
bool, None)
self._char_params_mib.bind_value_update(
"burn_osc_start",
self.rad_dmg_char_widget.burn_osc_start_ledit,
float,
qt_import.QDoubleValidator(0.0, 1000, 2, self),
)
self._char_params_mib.bind_value_update(
"burn_osc_interval",
self.rad_dmg_char_widget.burn_osc_interval_ledit,
float,
qt_import.QDoubleValidator(0.0, 1000, 2, self),
)
self._char_params_mib.bind_value_update(
"use_aimed_resolution",
self.opt_parameters_widget.opt_param_widget.maximum_res_cbx,
bool,
None,
)
self._char_params_mib.bind_value_update(
"use_aimed_multiplicity",
self.opt_parameters_widget.opt_param_widget.aimed_mult_cbx,
bool,
None,
)
self._char_params_mib.bind_value_update(
"aimed_resolution",
self.opt_parameters_widget.opt_param_widget.maximum_res_ledit,
float,
qt_import.QDoubleValidator(0.01, 1000, 2, self),
)
self._char_params_mib.bind_value_update(
"aimed_multiplicity",
self.opt_parameters_widget.opt_param_widget.aimed_mult_ledit,
float,
qt_import.QDoubleValidator(0.01, 1000, 2, self),
)
self._char_params_mib.bind_value_update(
"aimed_i_sigma",
self.opt_parameters_widget.opt_param_widget.i_over_sigma_ledit,
float,
qt_import.QDoubleValidator(0.01, 1000, 2, self),
)
self._char_params_mib.bind_value_update(
"aimed_completness",
self.opt_parameters_widget.opt_param_widget.aimed_comp_ledit,
float,
qt_import.QDoubleValidator(0.01, 1000, 2, self),
)
self._char_params_mib.bind_value_update(
"strategy_complexity",
self.opt_parameters_widget.opt_param_widget.start_comp_cbox,
int,
None,
)
self._char_params_mib.bind_value_update(
"use_permitted_rotation",
self.opt_parameters_widget.opt_param_widget.permitted_range_cbx,
bool,
None,
)
self._char_params_mib.bind_value_update(
"permitted_phi_start",
self.opt_parameters_widget.opt_param_widget.phi_start_ledit,
float,
qt_import.QDoubleValidator(0.0, 1000, 2, self),
)
self._char_params_mib.bind_value_update(
"permitted_phi_end",
self.opt_parameters_widget.opt_param_widget.phi_end_ledit,
float,
qt_import.QDoubleValidator(0.0, 1000, 2, self),
)
self._char_params_mib.bind_value_update(
"low_res_pass_strat",
self.opt_parameters_widget.opt_param_widget.low_res_pass_cbx,
bool,
None,
)
self._char_params_mib.bind_value_update(
"rad_suscept",
self.rad_dmg_widget.sensetivity_ledit,
float,
qt_import.QDoubleValidator(0.0, 1000, 2, self),
)
self._char_params_mib.bind_value_update(
"beta",
self.rad_dmg_widget.beta_over_gray_ledit,
float,
qt_import.QDoubleValidator(0.0, 1000, 2, self),
)
self._char_params_mib.bind_value_update(
"gamma",
self.rad_dmg_widget.gamma_over_gray_ledit,
float,
qt_import.QDoubleValidator(0.0, 1000, 2, self),
)
self._char_params_mib.bind_value_update(
"max_crystal_vdim",
self.vertical_dimension_widget.max_vdim_ledit,
float,
qt_import.QDoubleValidator(0.0, 1000, 2, self),
)
self._char_params_mib.bind_value_update(
"min_crystal_vdim",
self.vertical_dimension_widget.min_vdim_ledit,
float,
qt_import.QDoubleValidator(0.0, 1000, 2, self),
)
self._char_params_mib.bind_value_update(
"min_crystal_vphi",
self.vertical_dimension_widget.min_vphi_ledit,
float,
qt_import.QDoubleValidator(0.0, 1000, 2, self),
)
self._char_params_mib.bind_value_update(
"max_crystal_vphi",
self.vertical_dimension_widget.max_vphi_ledit,
float,
qt_import.QDoubleValidator(0.0, 1000, 2, self),
)
# self._char_params_mib.bind_value_update('space_group',
# self.vertical_dimension_widget.space_group_ledit,
# str,
# None)
self.vertical_dimension_widget.space_group_ledit.addItems(
queue_model_enumerables.XTAL_SPACEGROUPS)
self.char_type_widget.charact_type_tbox.currentChanged.connect(
self.update_char_type)
self.rad_dmg_char_widget.rad_damage_cbx.toggled.connect(
self.enable_opt_parameters_widget)
self.opt_parameters_widget.opt_param_widget.maximum_res_cbx.toggled.connect(
self.enable_maximum_res_ledit)
self.opt_parameters_widget.opt_param_widget.aimed_mult_cbx.toggled.connect(
self.enable_aimed_mult_ledit)
self.path_widget.data_path_layout.prefix_ledit.textChanged.connect(
self._prefix_ledit_change)
self.path_widget.data_path_layout.run_number_ledit.textChanged.connect(
self._run_number_ledit_change)
self.vertical_dimension_widget.space_group_ledit.activated.connect(
self._space_group_change)
def _space_group_change(self, index):
"""
Descript. :
"""
self._char_params.space_group = queue_model_enumerables.XTAL_SPACEGROUPS[
index]
def _set_space_group(self, space_group):
"""
Descript. :
"""
index = 0
if space_group in queue_model_enumerables.XTAL_SPACEGROUPS:
index = queue_model_enumerables.XTAL_SPACEGROUPS.index(space_group)
self._space_group_change(index)
self.vertical_dimension_widget.space_group_ledit.setCurrentIndex(index)
def _prefix_ledit_change(self, new_value):
"""
Descript. :
"""
prefix = self._data_collection.acquisitions[
0].path_template.get_prefix()
self._char.set_name(prefix)
self._tree_view_item.setText(0, self._char.get_name())
def _run_number_ledit_change(self, new_value):
"""
Descript. :
"""
if str(new_value).isdigit():
self._char.set_number(int(new_value))
self._tree_view_item.setText(0, self._char.get_name())
def enable_aimed_mult_ledit(self, state):
"""
Descript. :
"""
self.opt_parameters_widget.opt_param_widget.aimed_mult_ledit.setEnabled(
state)
def enable_maximum_res_ledit(self, state):
"""
Descript. :
"""
self.opt_parameters_widget.opt_param_widget.maximum_res_ledit.setEnabled(
state)
def update_char_type(self, index):
"""
Descript. :
"""
self._char_params.experiment_type = index
def toggle_permitted_range(self, status):
"""
Descript. :
"""
self.opt_parameters_widget.opt_param_widget.phi_start_ledit.setEnabled(
status)
self.opt_parameters_widget.opt_param_widget.phi_end_ledit.setEnabled(
status)
def enable_opt_parameters_widget(self, state):
"""
Descript. :
"""
if not self._char.is_executed():
self.opt_parameters_widget.setEnabled(not state)
else:
self.opt_parameters_widget.setEnabled(False)
def set_enabled(self, state):
"""
Descript. :
"""
self.char_type_widget.setEnabled(state)
self.routine_dc_widget.setEnabled(state)
self.sad_widget.setEnabled(state)
self.rad_dmg_char_widget.setEnabled(state)
self.reference_img_widget.setEnabled(state)
self.acq_widget.setEnabled(state)
self.path_widget.setEnabled(state)
self.opt_parameters_widget.setEnabled(state)
self.rad_dmg_widget.setEnabled(state)
self.vertical_dimension_widget.setEnabled(state)
def populate_parameter_widget(self, tree_view_item):
"""
Descript. :
"""
self._tree_view_item = tree_view_item
self._char = tree_view_item.get_model()
self._data_collection = self._char.reference_image_collection
self._char_params = self._char.characterisation_parameters
self._char_params_mib.set_model(self._char.characterisation_parameters)
self._set_space_group(self._char_params.space_group)
self.acq_widget.update_data_model(
self._char.reference_image_collection.acquisitions[0].
acquisition_parameters,
self._char.reference_image_collection.acquisitions[0].
path_template,
)
self.path_widget.update_data_model(
self._char.reference_image_collection.acquisitions[0].path_template
)
if self._data_collection.acquisitions[
0].acquisition_parameters.centred_position.snapshot_image:
image = self._data_collection.acquisitions[
0].acquisition_parameters.centred_position.snapshot_image
ration = image.height() / float(image.width())
image = image.scaled(
400,
400 * ration,
qt_import.Qt.KeepAspectRatio,
qt_import.Qt.SmoothTransformation,
)
self.position_widget.svideo.setPixmap(qt_import.QPixmap(image))
self.toggle_permitted_range(self._char_params.use_permitted_rotation)
self.enable_opt_parameters_widget(
self._char_params.determine_rad_params)
self.enable_maximum_res_ledit(self._char_params.use_aimed_resolution)
self.enable_aimed_mult_ledit(self._char_params.use_aimed_multiplicity)
item = self.char_type_widget.charact_type_tbox.widget(
self._char_params.experiment_type)
if item:
self.char_type_widget.charact_type_tbox.setCurrentWidget(item)
self.char_type_widget.toggle_time_dose()
crystal = self._char.reference_image_collection.crystal
self.acq_widget.set_energies(crystal.energy_scan_result)
def __init__(self, parent=None, name=None, fl=0):
CreateTaskBase.__init__(self, parent, name, fl, "Characterisation")
self.setObjectName("create_char_widget")
# Hardware objects ----------------------------------------------------
# Internal variables --------------------------------------------------
self._vertical_dimension_widget = None
self._current_selected_item = None
self._char = None
self._char_params = None
self.init_models()
self._char_params_mib = DataModelInputBinder(self._char_params)
# Graphic elements ----------------------------------------------------
self._acq_widget = AcquisitionWidgetSimple(
self,
acq_params=self._acquisition_parameters,
path_template=self._path_template,
)
self._data_path_widget = DataPathWidget(self,
data_model=self._path_template,
layout="vertical")
self._vertical_dimension_widget = qt_import.load_ui_file(
"vertical_crystal_dimension_widget_layout.ui")
self._char_widget = qt_import.load_ui_file(
"characterise_simple_widget_vertical_layout.ui")
# Layout --------------------------------------------------------------
_main_vlayout = qt_import.QVBoxLayout(self)
_main_vlayout.addWidget(self._acq_widget)
_main_vlayout.addWidget(self._data_path_widget)
_main_vlayout.addWidget(self._char_widget)
_main_vlayout.addWidget(self._vertical_dimension_widget)
_main_vlayout.setContentsMargins(2, 2, 2, 2)
_main_vlayout.setSpacing(6)
_main_vlayout.addStretch(0)
# SizePolicies --------------------------------------------------------
# Qt signal/slot connections ------------------------------------------
self._data_path_widget.pathTemplateChangedSignal.connect(
self.path_template_changed)
self._acq_widget.acqParametersChangedSignal.connect(
self.acq_parameters_changed)
self._vertical_dimension_widget.space_group_ledit.activated.connect(
self._space_group_change)
self._char_widget.characterisation_gbox.toggled.connect(
self.characterisation_gbox_toggled)
self._char_widget.wait_result_cbx.toggled.connect(
self.wait_results_cbx_toggled)
self._char_widget.execute_plan_cbx.toggled.connect(
self.run_diffraction_plan_cbx_toggled)
# Other ---------------------------------------------------------------
if True:
self._char_params_mib.bind_value_update(
"opt_sad", self._char_widget.optimised_sad_cbx, bool, None)
self._char_params_mib.bind_value_update(
"account_rad_damage", self._char_widget.account_rad_dmg_cbx,
bool, None)
self._char_params_mib.bind_value_update(
"strategy_complexity", self._char_widget.start_comp_cbox, int,
None)
self._char_params_mib.bind_value_update(
"max_crystal_vdim",
self._vertical_dimension_widget.max_vdim_ledit,
float,
qt_import.QDoubleValidator(0.0, 1000, 2, self),
)
self._char_params_mib.bind_value_update(
"min_crystal_vdim",
self._vertical_dimension_widget.min_vdim_ledit,
float,
qt_import.QDoubleValidator(0.0, 1000, 2, self),
)
self._char_params_mib.bind_value_update(
"min_crystal_vphi",
self._vertical_dimension_widget.min_vphi_ledit,
float,
qt_import.QDoubleValidator(0.0, 1000, 2, self),
)
self._char_params_mib.bind_value_update(
"max_crystal_vphi",
self._vertical_dimension_widget.max_vphi_ledit,
float,
qt_import.QDoubleValidator(0.0, 1000, 2, self),
)
self._vertical_dimension_widget.space_group_ledit.addItems(
XTAL_SPACEGROUPS)
self._data_path_widget.data_path_layout.compression_cbox.setVisible(
False)
class CreateCharWidget(CreateTaskBase):
def __init__(self, parent=None, name=None, fl=0):
CreateTaskBase.__init__(self, parent, name, fl, "Characterisation")
self.setObjectName("create_char_widget")
# Hardware objects ----------------------------------------------------
# Internal variables --------------------------------------------------
self._vertical_dimension_widget = None
self._current_selected_item = None
self._char = None
self._char_params = None
self.init_models()
self._char_params_mib = DataModelInputBinder(self._char_params)
# Graphic elements ----------------------------------------------------
self._acq_widget = AcquisitionWidgetSimple(
self,
acq_params=self._acquisition_parameters,
path_template=self._path_template,
)
self._data_path_widget = DataPathWidget(self,
data_model=self._path_template,
layout="vertical")
self._vertical_dimension_widget = qt_import.load_ui_file(
"vertical_crystal_dimension_widget_layout.ui")
self._char_widget = qt_import.load_ui_file(
"characterise_simple_widget_vertical_layout.ui")
# Layout --------------------------------------------------------------
_main_vlayout = qt_import.QVBoxLayout(self)
_main_vlayout.addWidget(self._acq_widget)
_main_vlayout.addWidget(self._data_path_widget)
_main_vlayout.addWidget(self._char_widget)
_main_vlayout.addWidget(self._vertical_dimension_widget)
_main_vlayout.setContentsMargins(2, 2, 2, 2)
_main_vlayout.setSpacing(6)
_main_vlayout.addStretch(0)
# SizePolicies --------------------------------------------------------
# Qt signal/slot connections ------------------------------------------
self._data_path_widget.pathTemplateChangedSignal.connect(
self.path_template_changed)
self._acq_widget.acqParametersChangedSignal.connect(
self.acq_parameters_changed)
self._vertical_dimension_widget.space_group_ledit.activated.connect(
self._space_group_change)
self._char_widget.characterisation_gbox.toggled.connect(
self.characterisation_gbox_toggled)
self._char_widget.wait_result_cbx.toggled.connect(
self.wait_results_cbx_toggled)
self._char_widget.execute_plan_cbx.toggled.connect(
self.run_diffraction_plan_cbx_toggled)
# Other ---------------------------------------------------------------
if True:
self._char_params_mib.bind_value_update(
"opt_sad", self._char_widget.optimised_sad_cbx, bool, None)
self._char_params_mib.bind_value_update(
"account_rad_damage", self._char_widget.account_rad_dmg_cbx,
bool, None)
self._char_params_mib.bind_value_update(
"strategy_complexity", self._char_widget.start_comp_cbox, int,
None)
self._char_params_mib.bind_value_update(
"max_crystal_vdim",
self._vertical_dimension_widget.max_vdim_ledit,
float,
qt_import.QDoubleValidator(0.0, 1000, 2, self),
)
self._char_params_mib.bind_value_update(
"min_crystal_vdim",
self._vertical_dimension_widget.min_vdim_ledit,
float,
qt_import.QDoubleValidator(0.0, 1000, 2, self),
)
self._char_params_mib.bind_value_update(
"min_crystal_vphi",
self._vertical_dimension_widget.min_vphi_ledit,
float,
qt_import.QDoubleValidator(0.0, 1000, 2, self),
)
self._char_params_mib.bind_value_update(
"max_crystal_vphi",
self._vertical_dimension_widget.max_vphi_ledit,
float,
qt_import.QDoubleValidator(0.0, 1000, 2, self),
)
self._vertical_dimension_widget.space_group_ledit.addItems(
XTAL_SPACEGROUPS)
self._data_path_widget.data_path_layout.compression_cbox.setVisible(
False)
def enable_compression(self, state):
CreateTaskBase.enable_compression(self, False)
def use_induced_burn(self, state):
self._acquisition_parameters.induce_burn = state
def _space_group_change(self, index):
self._char_params.space_group = queue_model_enumerables.XTAL_SPACEGROUPS[
index]
def _set_space_group(self, space_group):
index = 0
if self._vertical_dimension_widget:
if space_group in XTAL_SPACEGROUPS:
index = XTAL_SPACEGROUPS.index(space_group)
self._space_group_change(index)
self._vertical_dimension_widget.space_group_ledit.setCurrentIndex(
index)
def init_models(self):
CreateTaskBase.init_models(self)
self._init_models()
def _init_models(self):
self._char = queue_model_objects.Characterisation()
self._char_params = self._char.characterisation_parameters
self._processing_parameters = queue_model_objects.ProcessingParameters(
)
self._set_space_group(self._processing_parameters.space_group)
self._acquisition_parameters = (
HWR.beamline.get_default_acquisition_parameters("default"))
self._char_params = (HWR.beamline.characterisation.
get_default_characterisation_parameters())
self._path_template.reference_image_prefix = "ref"
# The num images drop down default value is 1
# we would like it to be 2
self._acquisition_parameters.num_images = 2
self._char.characterisation_software = (
queue_model_enumerables.COLLECTION_ORIGIN.EDNA)
self._path_template.num_files = 2
self._path_template.compression = False
self._acquisition_parameters.shutterless = False
def single_item_selection(self, tree_item):
CreateTaskBase.single_item_selection(self, tree_item)
if isinstance(tree_item, queue_item.SampleQueueItem):
if self._char_params.space_group == "":
sample_model = tree_item.get_model()
self._set_space_group(
sample_model.processing_parameters.space_group)
elif isinstance(tree_item, queue_item.BasketQueueItem):
self.setDisabled(False)
elif isinstance(tree_item, queue_item.CharacterisationQueueItem):
if tree_item.get_model().is_executed():
self.setDisabled(True)
else:
self.setDisabled(False)
self._char = tree_item.get_model()
if self._char.get_path_template():
self._path_template = self._char.get_path_template()
self._data_path_widget.update_data_model(self._path_template)
data_collection = self._char.reference_image_collection
self._char_params = self._char.characterisation_parameters
self._char_params_mib.set_model(self._char_params)
self._acquisition_parameters = data_collection.acquisitions[
0].acquisition_parameters
self._acq_widget.update_data_model(self._acquisition_parameters,
self._path_template)
# self.get_acquisition_widget().use_osc_start(True)
if len(data_collection.acquisitions) == 1:
HWR.beamline.sample_view.select_shape_with_cpos(
self._acquisition_parameters.centred_position)
self._processing_parameters = data_collection.processing_parameters
else:
self.setDisabled(True)
def update_processing_parameters(self, crystal):
self._processing_parameters.space_group = crystal.space_group
self._char_params.space_group = crystal.space_group
self._processing_parameters.cell_a = crystal.cell_a
self._processing_parameters.cell_alpha = crystal.cell_alpha
self._processing_parameters.cell_b = crystal.cell_b
self._processing_parameters.cell_beta = crystal.cell_beta
self._processing_parameters.cell_c = crystal.cell_c
self._processing_parameters.cell_gamma = crystal.cell_gamma
def approve_creation(self):
result = CreateTaskBase.approve_creation(self)
selected_shapes = HWR.beamline.sample_view.get_selected_shapes()
for shape in selected_shapes:
if isinstance(shape, GraphicsItemPoint):
result = True
return result
# Called by the owning widget (task_toolbox_widget) to create
# a collection. when a data collection group is selected.
def _create_task(self, sample, shape, comments=None):
tasks = []
if not shape or not isinstance(shape, GraphicsItemPoint):
cpos = queue_model_objects.CentredPosition()
cpos.snapshot_image = HWR.beamline.sample_view.get_snapshot()
else:
# Shapes selected and sample is mounted, get the
# centred positions for the shapes
snapshot = HWR.beamline.sample_view.get_snapshot(shape)
cpos = copy.deepcopy(shape.get_centred_position())
cpos.snapshot_image = snapshot
char_params = copy.deepcopy(self._char_params)
acq = self._create_acq(sample)
dc = queue_model_objects.DataCollection([acq], sample.crystals[0],
self._processing_parameters)
# Reference images for characterisations should be taken 90 deg apart
# this is achived by setting overap to -89
acq.acquisition_parameters.overlap = -89
acq.acquisition_parameters.centred_position = cpos
if comments:
acq.acquisition_parameters.comments = comments
dc.acquisitions[0] = acq
dc.experiment_type = queue_model_enumerables.EXPERIMENT_TYPE.EDNA_REF
dc.run_online_processing = False
char = queue_model_objects.Characterisation(dc, char_params)
char.set_name(dc.acquisitions[0].path_template.get_prefix())
char.set_number(dc.acquisitions[0].path_template.run_number)
char.run_characterisation = self._char_widget.characterisation_gbox.isChecked(
)
char.wait_result = self._char_widget.wait_result_cbx.isChecked()
char.run_diffraction_plan = self._char_widget.execute_plan_cbx.isChecked(
)
char.diff_plan_compression = self._tree_brick.compression_state
tasks.append(char)
self._path_template.run_number += 1
if HWR.beamline.flux.get_value() < 1e9:
logging.getLogger("GUI").error(
"No flux reading is available! " +
"Characterisation result may be wrong. "
"Measure flux before running the characterisation.")
return tasks
def characterisation_gbox_toggled(self, state):
if self._char:
self._char.run_characterisation = state
def wait_results_cbx_toggled(self, state):
if self._char:
self._char.wait_result = state
def run_diffraction_plan_cbx_toggled(self, state):
if self._char:
self._char.run_diffraction_plan = state
class AcquisitionSsxWidget(qt_import.QWidget):
acqParametersChangedSignal = qt_import.pyqtSignal(list)
def __init__(
self,
parent=None,
name=None,
fl=0,
acq_params=None,
path_template=None,
layout="vertical",
):
"""
Loads ui file that defines the gui layout.
Initiates QLineEdits by adding limits, precision
Connects to qt signals to update acquisition parameters
:param parent:
:param name:
:param fl:
:param acq_params:
:param path_template:
:param layout:
"""
qt_import.QWidget.__init__(self, parent, qt_import.Qt.WindowFlags(fl))
if name is not None:
self.setObjectName(name)
# Internal variables --------------------------------------------------
self.value_changed_list = []
# Properties ----------------------------------------------------------
# Signals -------------------------------------------------------------
# Slots ---------------------------------------------------------------
# Graphic elements ----------------------------------------------------
if acq_params is None:
self._acquisition_parameters = queue_model_objects.AcquisitionParameters(
)
else:
self._acquisition_parameters = acq_params
if path_template is None:
self._path_template = queue_model_objects.PathTemplate()
else:
self._path_template = path_template
self._acquisition_mib = DataModelInputBinder(
self._acquisition_parameters)
self.acq_widget_layout = qt_import.load_ui_file(
"acquisition_widget_vertical_ssx_layout.ui")
# Layout --------------------------------------------------------------
__main_vlayout = qt_import.QVBoxLayout(self)
__main_vlayout.addWidget(self.acq_widget_layout)
__main_vlayout.setSpacing(0)
__main_vlayout.setContentsMargins(0, 0, 0, 0)
# SizePolicies --------------------------------------------------------
# Qt signal/slot connections ------------------------------------------
self.acq_widget_layout.num_triggers_ledit.textChanged.connect(
self.num_triggers_ledit_changed)
self.acq_widget_layout.num_images_per_trigger_ledit.textChanged.connect(
self.num_images_per_trigger_ledit_changed)
self.acq_widget_layout.exp_time_ledit.textChanged.connect(
self.exposure_time_ledit_changed)
self.acq_widget_layout.detector_roi_mode_combo.activated.connect(
self.detector_roi_mode_changed)
self.acq_widget_layout.energy_ledit.textEdited.connect(
self.energy_ledit_changed)
self.acq_widget_layout.transmission_ledit.textEdited.connect(
self.transmission_ledit_changed)
self.acq_widget_layout.resolution_ledit.textEdited.connect(
self.resolution_ledit_changed)
# Other ---------------------------------------------------------------
self.energy_validator = qt_import.QDoubleValidator(
4, 25, 4, self.acq_widget_layout.energy_ledit)
self.resolution_validator = qt_import.QDoubleValidator(
0, 15, 3, self.acq_widget_layout.resolution_ledit)
self.transmission_validator = qt_import.QDoubleValidator(
0, 100, 3, self.acq_widget_layout.transmission_ledit)
self.exp_time_validator = qt_import.QDoubleValidator(
0.0001, 10000, 7, self.acq_widget_layout.exp_time_ledit)
self.num_triggers_validator = qt_import.QIntValidator(
1, 9999999, self.acq_widget_layout.num_triggers_ledit)
self.num_images_per_trigger_validator = qt_import.QIntValidator(
1, 9999999, self.acq_widget_layout.num_images_per_trigger_ledit)
self.num_img_validator = qt_import.QIntValidator(
1, 9999999, self.acq_widget_layout.num_images_ledit)
self.hare_num_validator = qt_import.QIntValidator(
1, 9999999, self.acq_widget_layout.hare_num_ledit)
limits_dict = HWR.beamline.acquisition_limit_values
tpl = limits_dict.get("exposure_time")
if tpl:
self.exp_time_validator.setRange(tpl[0], tpl[1], 6)
self._acquisition_mib.bind_value_update(
"exp_time",
self.acq_widget_layout.exp_time_ledit,
float,
self.exp_time_validator,
)
self._acquisition_mib.bind_value_update(
"num_triggers",
self.acq_widget_layout.num_triggers_ledit,
int,
self.num_triggers_validator,
)
self._acquisition_mib.bind_value_update(
"num_images_per_trigger",
self.acq_widget_layout.num_images_per_trigger_ledit,
int,
self.num_images_per_trigger_validator,
)
self._acquisition_mib.bind_value_update(
"hare_num",
self.acq_widget_layout.hare_num_ledit,
int,
self.hare_num_validator,
)
tpl = limits_dict.get("number_of_images")
if tpl:
self.num_img_validator.setRange(tpl[0], tpl[1])
self._acquisition_mib.bind_value_update(
"num_images",
self.acq_widget_layout.num_images_ledit,
int,
self.num_img_validator,
)
self._acquisition_mib.bind_value_update(
"energy", self.acq_widget_layout.energy_ledit, float,
self.energy_validator)
self.update_energy_limits(
(self.energy_validator.bottom(), self.energy_validator.top()))
self._acquisition_mib.bind_value_update(
"transmission",
self.acq_widget_layout.transmission_ledit,
float,
self.transmission_validator,
)
self.update_transmission_limits((self.transmission_validator.bottom(),
self.transmission_validator.top()))
self._acquisition_mib.bind_value_update(
"resolution",
self.acq_widget_layout.resolution_ledit,
float,
self.resolution_validator,
)
self.init_detector_roi_modes()
self.acq_widget_layout.detector_roi_mode_label.setEnabled(False)
self.acq_widget_layout.detector_roi_mode_combo.setEnabled(False)
self.update_exp_time_limits()
def update_osc_total_range(self):
"""
:return: None
"""
return
def use_osc_start(self, status):
"""
:param status: boolean
:return: None
"""
return
def use_max_osc_range(self, status):
"""
:param status: boolean
:return: None
"""
return
def use_kappa(self, status):
"""
:param status: boolean
:return: None
"""
return
def exposure_time_ledit_changed(self, value):
"""
Updates exposure time QLineEdit
:param value: str
:return: None
"""
self.update_total_exp_time()
self.emit_acq_parameters_changed()
def energy_ledit_changed(self, value):
"""
Fixes energy value. Energy change will not rewrite the typed energy value
:param value: str
:return: None
"""
if "energy" not in self.value_changed_list:
self.value_changed_list.append("energy")
self.emit_acq_parameters_changed()
def update_energy(self, energy):
"""
Updates energy QLineEdit
:param energy: energy in keV (float)
:param wav: wavelength in A (float)
:return: None
"""
if ("energy" not in self.value_changed_list
and not self.acq_widget_layout.energy_ledit.hasFocus()):
self.acq_widget_layout.energy_ledit.setText(str(energy))
self.emit_acq_parameters_changed()
def transmission_ledit_changed(self, transmission):
"""
Event when a value in the transmission QLineEdit is changed
:param transmission: in perc. (str)
:return: None
"""
if "transmission" not in self.value_changed_list:
self.value_changed_list.append("transmission")
self.emit_acq_parameters_changed()
def update_transmission(self, transmission):
"""
Updates transmission QLineEdit
:param transmission: in perc. (float)
:return: None
"""
if "transmission" not in self.value_changed_list:
self.acq_widget_layout.transmission_ledit.setText(
str(transmission))
self.emit_acq_parameters_changed()
def resolution_ledit_changed(self, resolution):
"""
Method called when user changes resolution
:param resolution: in A (float)
:return: None
"""
if "resolution" not in self.value_changed_list:
self.value_changed_list.append("resolution")
self.emit_acq_parameters_changed()
def update_resolution(self, resolution):
"""
Updates resolution QLineEdit
:param resolution: A (float)
:return: None
"""
if ("resolution" not in self.value_changed_list
and not self.acq_widget_layout.resolution_ledit.hasFocus()):
self.acq_widget_layout.resolution_ledit.setText(str(resolution))
self.emit_acq_parameters_changed()
def update_energy_limits(self, limits):
"""
Updates energy limits
:param limits: list of two floats
:return: None
"""
if limits:
self.energy_validator.setBottom(limits[0])
self.energy_validator.setTop(limits[1])
self.acq_widget_layout.energy_ledit.setToolTip(
"Energy limits %0.4f : %0.4f keV\n" % (limits[0], limits[1]) +
"4 digits precision.")
self._acquisition_mib.validate_all()
def update_transmission_limits(self, limits):
"""
Updates transmission limits
:param limits: list of two floats
:return: None
"""
if limits:
self.transmission_validator.setBottom(limits[0])
self.transmission_validator.setTop(limits[1])
self.acq_widget_layout.transmission_ledit.setToolTip(
"Transmission limits %0.2f : %0.2f %%\n" %
(limits[0], limits[1]) + "2 digits precision.")
self._acquisition_mib.validate_all()
def update_resolution_limits(self, limits):
"""
Updates resolution limits
:param limits: list of two floats
:return: None
"""
if limits:
self.resolution_validator.setBottom(limits[0])
self.resolution_validator.setTop(limits[1])
self.acq_widget_layout.resolution_ledit.setToolTip(
"Resolution limits %0.4f : %0.4f %s\n" %
(limits[0], limits[1], chr(197)) + "4 digits precision.")
self._acquisition_mib.validate_all()
def update_detector_exp_time_limits(self, limits):
"""
Updates exposure time limits
:param limits: list of two floats
:return: None
"""
if limits:
self.exp_time_validator.setRange(limits[0], limits[1], 6)
self.acq_widget_layout.exp_time_ledit.setToolTip(
"Exposure time limits %0.6f s : %0.1f s\n" %
(limits[0], limits[1]) + "6 digits precision.")
self._acquisition_mib.validate_all()
def init_detector_roi_modes(self):
"""
Initiates detetor ROI modes. Available modes are added to the combobox
:return: None
"""
roi_modes = HWR.beamline.detector.get_roi_modes()
if (len(roi_modes) > 0 and
self.acq_widget_layout.detector_roi_mode_combo.count() == 0):
for roi_mode in roi_modes:
self.acq_widget_layout.detector_roi_mode_combo.addItem(
roi_mode)
self.acq_widget_layout.detector_roi_mode_label.setEnabled(
len(roi_modes) > 1)
self.acq_widget_layout.detector_roi_mode_combo.setEnabled(
len(roi_modes) > 1)
def update_detector_roi_mode(self, roi_mode_index):
"""
Method called when roi mode has been chaned
:param roi_mode_index: int
:return: None
"""
if (roi_mode_index is not None and
self.acq_widget_layout.detector_roi_mode_combo.count() > 0):
self.acq_widget_layout.detector_roi_mode_combo.setCurrentIndex(
roi_mode_index)
def detector_roi_mode_changed(self, roi_mode_index):
"""
Method called when user selects a detector roi mode
:param roi_mode_index: int
:return:
"""
HWR.beamline.detector.set_roi_mode(roi_mode_index)
def update_osc_range_per_frame_limits(self):
"""
Updates osc range per frame limits
:return: None
"""
return
def update_exp_time_limits(self):
self.update_detector_exp_time_limits(
HWR.beamline.detector.get_exposure_time_limits())
def update_osc_start(self, value):
"""
Updates osc start
:param value: float
:return: None
"""
return
def update_kappa(self, value):
"""
Updates kappa value
:param value: float
:return:
"""
return
def update_kappa_phi(self, value):
"""
Updates kappa phi value
:param value: float
:return: None
"""
return
def update_data_model(self, acquisition_parameters, path_template):
"""
Updates data model
:param acquisition_parameters: AcquisitionParameters
:param path_template: PathTemplate
:return: None
"""
self._acquisition_parameters = acquisition_parameters
self._path_template = path_template
self._acquisition_mib.set_model(acquisition_parameters)
self.emit_acq_parameters_changed()
def check_parameter_conflict(self):
"""
Checks for parameter conflicts
:return: list of conflicts
"""
return self._acquisition_mib.validate_all()
def emit_acq_parameters_changed(self):
"""
Emits acqParametersChangedSignal
:return: None
"""
self.acqParametersChangedSignal.emit(
self._acquisition_mib.validate_all())
def set_energies(self, energies):
"""
Sets energies
:param energies:
:return: None
"""
return
def num_triggers_ledit_changed(self, value):
"""
Updates num images and total exp time
:param value: QString
:return: None
"""
if "num_triggers" not in self.value_changed_list:
self.value_changed_list.append("num_triggers")
self.update_num_images()
self.update_total_exp_time()
self.emit_acq_parameters_changed()
def num_images_per_trigger_ledit_changed(self, value):
"""
Updates num images and total exp time
:param value: QString
:return: None
"""
if "num_images_per_trigger" not in self.value_changed_list:
self.value_changed_list.append("num_images_per_trigger")
self.update_num_images()
self.update_total_exp_time()
self.emit_acq_parameters_changed()
def update_num_images(self):
"""
Updates num images
:return: None
"""
self.acq_widget_layout.num_images_ledit.setText(
str(self._acquisition_parameters.num_triggers *
self._acquisition_parameters.num_images_per_trigger))
def update_total_exp_time(self):
"""Updates total exposure time
:return: None
"""
try:
self.acq_widget_layout.exp_time_total_ledit.setText(
"%.2f" %
(float(self.acq_widget_layout.exp_time_ledit.text()) *
float(self.acq_widget_layout.num_images_ledit.text())))
except BaseException:
pass
def __init__(self, *args):
BaseWidget.__init__(self, *args)
# Internal variables ------------------------------------------------
self.sample = queue_model_objects.Sample()
self.crystal = self.sample.crystals[0]
self.sample_mib = DataModelInputBinder(self.sample)
self.crystal_mib = DataModelInputBinder(self.crystal)
# Signals ------------------------------------------------------------
# Slots --------------------------------------------------------------
self.define_slot("populate_sample_details", ({}))
# Graphic elements ----------------------------------------------------
_info_widget = qt_import.QWidget(self)
self.crystal_widget = qt_import.load_ui_file("crystal_widget_layout.ui")
self.sample_info_widget = qt_import.load_ui_file("sample_info_widget_layout.ui")
# self.ispyb_sample_info_widget = ISPyBSampleInfoWidget(self)
# Layout --------------------------------------------------------------
_info_widget_hlayout = qt_import.QHBoxLayout(_info_widget)
_info_widget_hlayout.addWidget(self.sample_info_widget)
_info_widget_hlayout.addWidget(self.crystal_widget)
_info_widget_hlayout.addStretch(0)
_info_widget_hlayout.setSpacing(0)
_info_widget_hlayout.setContentsMargins(2, 2, 2, 2)
_main_hlayout = qt_import.QVBoxLayout(self)
_main_hlayout.addWidget(_info_widget)
# _main_hlayout.addWidget(self.ispyb_sample_info_widget)
_main_hlayout.addStretch(0)
_main_hlayout.setSpacing(0)
_main_hlayout.setContentsMargins(2, 2, 2, 2)
# SizePolicies --------------------------------------------------------
# Qt signal/slot connections ------------------------------------------
# Other ---------------------------------------------------------------
self.crystal_mib.bind_value_update(
"space_group", self.crystal_widget.space_group_value_label, str, None
)
self.crystal_mib.bind_value_update(
"protein_acronym",
self.crystal_widget.protein_acronym_value_label,
str,
None,
)
self.crystal_mib.bind_value_update(
"cell_a", self.crystal_widget.a_value_label, str, None
)
self.crystal_mib.bind_value_update(
"cell_alpha", self.crystal_widget.alpha_value_label, str, None
)
self.crystal_mib.bind_value_update(
"cell_b", self.crystal_widget.b_value_label, str, None
)
self.crystal_mib.bind_value_update(
"cell_beta", self.crystal_widget.beta_value_label, str, None
)
self.crystal_mib.bind_value_update(
"cell_c", self.crystal_widget.c_value_label, str, None
)
self.crystal_mib.bind_value_update(
"cell_gamma", self.crystal_widget.gamma_value_label, str, None
)
self.sample_mib.bind_value_update(
"name", self.sample_info_widget.name_value_label, str, None
)
self.sample_mib.bind_value_update(
"code", self.sample_info_widget.data_matrix_value_label, str, None
)
self.sample_mib.bind_value_update(
"holder_length",
self.sample_info_widget.holder_length_value_label,
str,
None,
)
self.sample_mib.bind_value_update(
"lims_sample_location",
self.sample_info_widget.sample_location_value_label,
str,
None,
)
self.sample_mib.bind_value_update(
"lims_container_location",
self.sample_info_widget.basket_location_value_label,
str,
None,
)
def __init__(
self,
parent=None,
name=None,
fl=0,
acq_params=None,
path_template=None,
layout="vertical",
):
"""
Loads ui file that defines the gui layout.
Initiates QLineEdits by adding limits, precision
Connects to qt signals to update acquisition parameters
:param parent:
:param name:
:param fl:
:param acq_params:
:param path_template:
:param layout:
"""
qt_import.QWidget.__init__(self, parent, qt_import.Qt.WindowFlags(fl))
if name is not None:
self.setObjectName(name)
# Internal variables --------------------------------------------------
self.value_changed_list = []
# Properties ----------------------------------------------------------
# Signals -------------------------------------------------------------
# Slots ---------------------------------------------------------------
# Graphic elements ----------------------------------------------------
if acq_params is None:
self._acquisition_parameters = queue_model_objects.AcquisitionParameters(
)
else:
self._acquisition_parameters = acq_params
if path_template is None:
self._path_template = queue_model_objects.PathTemplate()
else:
self._path_template = path_template
self._acquisition_mib = DataModelInputBinder(
self._acquisition_parameters)
self.acq_widget_layout = qt_import.load_ui_file(
"acquisition_widget_vertical_ssx_layout.ui")
# Layout --------------------------------------------------------------
__main_vlayout = qt_import.QVBoxLayout(self)
__main_vlayout.addWidget(self.acq_widget_layout)
__main_vlayout.setSpacing(0)
__main_vlayout.setContentsMargins(0, 0, 0, 0)
# SizePolicies --------------------------------------------------------
# Qt signal/slot connections ------------------------------------------
self.acq_widget_layout.num_triggers_ledit.textChanged.connect(
self.num_triggers_ledit_changed)
self.acq_widget_layout.num_images_per_trigger_ledit.textChanged.connect(
self.num_images_per_trigger_ledit_changed)
self.acq_widget_layout.exp_time_ledit.textChanged.connect(
self.exposure_time_ledit_changed)
self.acq_widget_layout.detector_roi_mode_combo.activated.connect(
self.detector_roi_mode_changed)
self.acq_widget_layout.energy_ledit.textEdited.connect(
self.energy_ledit_changed)
self.acq_widget_layout.transmission_ledit.textEdited.connect(
self.transmission_ledit_changed)
self.acq_widget_layout.resolution_ledit.textEdited.connect(
self.resolution_ledit_changed)
# Other ---------------------------------------------------------------
self.energy_validator = qt_import.QDoubleValidator(
4, 25, 4, self.acq_widget_layout.energy_ledit)
self.resolution_validator = qt_import.QDoubleValidator(
0, 15, 3, self.acq_widget_layout.resolution_ledit)
self.transmission_validator = qt_import.QDoubleValidator(
0, 100, 3, self.acq_widget_layout.transmission_ledit)
self.exp_time_validator = qt_import.QDoubleValidator(
0.0001, 10000, 7, self.acq_widget_layout.exp_time_ledit)
self.num_triggers_validator = qt_import.QIntValidator(
1, 9999999, self.acq_widget_layout.num_triggers_ledit)
self.num_images_per_trigger_validator = qt_import.QIntValidator(
1, 9999999, self.acq_widget_layout.num_images_per_trigger_ledit)
self.num_img_validator = qt_import.QIntValidator(
1, 9999999, self.acq_widget_layout.num_images_ledit)
self.hare_num_validator = qt_import.QIntValidator(
1, 9999999, self.acq_widget_layout.hare_num_ledit)
limits_dict = HWR.beamline.acquisition_limit_values
tpl = limits_dict.get("exposure_time")
if tpl:
self.exp_time_validator.setRange(tpl[0], tpl[1], 6)
self._acquisition_mib.bind_value_update(
"exp_time",
self.acq_widget_layout.exp_time_ledit,
float,
self.exp_time_validator,
)
self._acquisition_mib.bind_value_update(
"num_triggers",
self.acq_widget_layout.num_triggers_ledit,
int,
self.num_triggers_validator,
)
self._acquisition_mib.bind_value_update(
"num_images_per_trigger",
self.acq_widget_layout.num_images_per_trigger_ledit,
int,
self.num_images_per_trigger_validator,
)
self._acquisition_mib.bind_value_update(
"hare_num",
self.acq_widget_layout.hare_num_ledit,
int,
self.hare_num_validator,
)
tpl = limits_dict.get("number_of_images")
if tpl:
self.num_img_validator.setRange(tpl[0], tpl[1])
self._acquisition_mib.bind_value_update(
"num_images",
self.acq_widget_layout.num_images_ledit,
int,
self.num_img_validator,
)
self._acquisition_mib.bind_value_update(
"energy", self.acq_widget_layout.energy_ledit, float,
self.energy_validator)
self.update_energy_limits(
(self.energy_validator.bottom(), self.energy_validator.top()))
self._acquisition_mib.bind_value_update(
"transmission",
self.acq_widget_layout.transmission_ledit,
float,
self.transmission_validator,
)
self.update_transmission_limits((self.transmission_validator.bottom(),
self.transmission_validator.top()))
self._acquisition_mib.bind_value_update(
"resolution",
self.acq_widget_layout.resolution_ledit,
float,
self.resolution_validator,
)
self.init_detector_roi_modes()
self.acq_widget_layout.detector_roi_mode_label.setEnabled(False)
self.acq_widget_layout.detector_roi_mode_combo.setEnabled(False)
self.update_exp_time_limits()
class DataPathWidget(qt_import.QWidget):
pathTemplateChangedSignal = qt_import.pyqtSignal()
def __init__(self, parent=None, name="", fl=0, data_model=None, layout=None):
qt_import.QWidget.__init__(self, parent, qt_import.Qt.WindowFlags(fl))
if name is not None:
self.setObjectName(name)
self.parent = parent
# Hardware objects ----------------------------------------------------
# Internal variables --------------------------------------------------
self._base_image_dir = ""
self._base_process_dir = ""
self.path_conflict_state = False
self.enable_macros = False
if data_model is None:
self._data_model = queue_model_objects.PathTemplate()
else:
self._data_model = data_model
self._data_model_pm = DataModelInputBinder(self._data_model)
# Graphic elements ----------------------------------------------------
if layout == "vertical":
self.data_path_layout = qt_import.load_ui_file(
"data_path_widget_vertical_layout.ui"
)
else:
self.data_path_layout = qt_import.load_ui_file(
"data_path_widget_horizontal_layout.ui"
)
# Layout --------------------------------------------------------------
_main_vlayout = qt_import.QVBoxLayout(self)
_main_vlayout.addWidget(self.data_path_layout)
_main_vlayout.setSpacing(0)
_main_vlayout.setContentsMargins(0, 0, 0, 0)
# Qt signal/slot connections ------------------------------------------
self.data_path_layout.prefix_ledit.textChanged.connect(
self._prefix_ledit_change
)
self.data_path_layout.run_number_ledit.textChanged.connect(
self._run_number_ledit_change
)
self.data_path_layout.browse_button.clicked.connect(self._browse_clicked)
self.data_path_layout.folder_ledit.textChanged.connect(
self._folder_ledit_change
)
self.data_path_layout.compression_cbox.clicked.connect(
self._compression_toggled
)
# Other ---------------------------------------------------------------
self._data_model_pm.bind_value_update(
"base_prefix", self.data_path_layout.prefix_ledit, str, None
)
self._data_model_pm.bind_value_update(
"run_number",
self.data_path_layout.run_number_ledit,
int,
qt_import.QIntValidator(0, 1000, self),
)
self._data_model_pm.bind_value_update(
"compression", self.data_path_layout.compression_cbox, bool, None
)
def set_base_image_directory(self, base_image_dir):
self._base_image_dir = base_image_dir
def set_base_process_directory(self, base_process_dir):
self._base_process_dir = base_process_dir
def _browse_clicked(self):
file_dialog = qt_import.QFileDialog(self)
file_dialog.setNameFilter("%s*" % self._base_image_dir)
selected_dir = str(
file_dialog.getExistingDirectory(
self, "Select a directory", str(self._base_image_dir), qt_import.QFileDialog.ShowDirsOnly
)
)
if selected_dir is not None and len(selected_dir) > 0 and selected_dir.startswith(self._base_image_dir):
self.set_directory(selected_dir)
else:
msg = "Selected directory do not start " +\
"with the base directory %s" % self._base_image_dir
logging.getLogger("GUI").error(msg)
def _prefix_ledit_change(self, new_value):
cursor_pos = self.data_path_layout.prefix_ledit.cursorPosition()
if len(new_value) > 0:
available_chars = (
string.ascii_lowercase + string.ascii_uppercase + string.digits + "-_"
)
if self.enable_macros:
available_chars += "%"
new_value = "".join(i for i in str(new_value) if i in available_chars)
new_value = new_value.replace("\\", "")
if len(new_value) > 50:
logging.getLogger("GUI").error(
"Current prefix is to long (max 50 characters are allowed)"
)
new_value = new_value[:-1]
self.data_path_layout.prefix_ledit.setText(new_value)
self.data_path_layout.prefix_ledit.setCursorPosition(cursor_pos)
self._data_model.base_prefix = str(new_value)
self.update_file_name()
self.pathTemplateChangedSignal.emit()
def _run_number_ledit_change(self, new_value):
if str(new_value).isdigit():
self._data_model.run_number = int(new_value)
self.data_path_layout.run_number_ledit.setText(str(new_value))
self.update_file_name()
self.pathTemplateChangedSignal.emit()
else:
# self.data_path_layout.run_number_ledit.setText(str(self._data_model.run_number))
colors.set_widget_color(
self.data_path_layout.folder_ledit, colors.LIGHT_YELLOW
)
def _folder_ledit_change(self, new_value):
base_image_dir = self._base_image_dir
base_proc_dir = self._base_process_dir
new_sub_dir = str(new_value).strip(" ")
cursor_pos = self.data_path_layout.folder_ledit.cursorPosition()
if len(new_value) > 0:
available_chars = (
string.ascii_lowercase + string.ascii_uppercase + string.digits + "-_/"
)
if self.enable_macros:
available_chars += "%"
new_value = "".join(i for i in str(new_value) if i in available_chars)
# new_value = new_value.replace("\\", "")
new_sub_dir = str(new_value).strip(" ")
self.data_path_layout.folder_ledit.setText(new_value)
self.data_path_layout.folder_ledit.setCursorPosition(cursor_pos)
if len(new_sub_dir) > 0:
if new_sub_dir[0] == os.path.sep:
new_sub_dir = new_sub_dir[1:]
new_image_directory = os.path.join(base_image_dir, str(new_sub_dir))
new_proc_dir = os.path.join(base_proc_dir, str(new_sub_dir))
else:
new_image_directory = base_image_dir
new_proc_dir = base_proc_dir
self._data_model.directory = new_image_directory
self._data_model.process_directory = new_proc_dir
colors.set_widget_color(self.data_path_layout.folder_ledit, colors.WHITE)
self.pathTemplateChangedSignal.emit()
def _compression_toggled(self, state):
if hasattr(self.parent, "_tree_brick"):
if self.parent._tree_brick:
self.parent._tree_brick.compression_state = state
queue_model_objects.Characterisation.set_char_compression(state)
self._data_model.compression = state
self.update_file_name()
self.pathTemplateChangedSignal.emit()
def update_file_name(self):
"""
updates filename if prefix or run number changed
at start values are initalized before precision is set.
so a check for isdigit is done to be on the safe side
"""
if str(self._data_model.precision).isdigit():
file_name = self._data_model.get_image_file_name()
file_name = file_name.replace(
"%" + str(self._data_model.precision) + "d",
int(self._data_model.precision) * "#",
)
file_name = file_name.strip(" ")
self.data_path_layout.file_name_value_label.setText(file_name)
def set_data_path(self, path):
(dir_name, file_name) = os.path.split(path)
if self._data_model.precision:
precision = self._data_model.precision
else:
precision = "5"
self.set_directory(dir_name)
file_name = file_name.replace(
"%" + str(self._data_model.precision) + "d",
int(precision) * "#",
)
self.data_path_layout.file_name_value_label.setText(file_name)
def set_directory(self, directory):
self._data_model.directory = str(directory)
if len(directory.split("/")) != len(self._base_image_dir.split("/")):
dir_parts = directory.split("/")
sub_dir = os.path.join(*dir_parts[len(self._base_image_dir.split("/")) :])
self.data_path_layout.folder_ledit.setText(sub_dir)
else:
self.data_path_layout.folder_ledit.setText("")
self._data_model.directory = self._base_image_dir
self.data_path_layout.base_path_ledit.setText(self._base_image_dir)
# def set_run_number(self, run_number):
# """
# Descript. :
# """
# self._data_model.run_number = int(run_number)
# self.data_path_layout.run_number_ledit.setText(str(run_number))
def set_prefix(self, base_prefix):
self._data_model.base_prefix = str(base_prefix)
self.data_path_layout.prefix_ledit.setText(str(base_prefix))
file_name = self._data_model.get_image_file_name()
file_name = file_name.replace(
"%" + str(self._data_model.precision) + "d",
int(self._data_model.precision) * "#",
)
self.data_path_layout.file_name_value_label.setText(file_name)
def update_data_model(self, data_model):
self._data_model = data_model
self.set_data_path(data_model.get_image_path())
self._data_model_pm.set_model(data_model)
self.data_path_layout.browse_button.setEnabled(os.path.exists(self._base_image_dir))
def indicate_path_conflict(self, conflict):
if conflict:
colors.set_widget_color(
self.data_path_layout.prefix_ledit,
colors.LIGHT_RED,
qt_import.QPalette.Base,
)
colors.set_widget_color(
self.data_path_layout.run_number_ledit,
colors.LIGHT_RED,
qt_import.QPalette.Base,
)
colors.set_widget_color(
self.data_path_layout.folder_ledit,
colors.LIGHT_RED,
qt_import.QPalette.Base,
)
logging.getLogger("GUI").error(
"The current path settings will overwrite data "
+ "from another task. Correct the problem before "
+ "adding to queue"
)
else:
# We had a conflict previous, but its corrected now !
if self.path_conflict_state:
logging.getLogger("GUI").info("Path valid")
colors.set_widget_color(
self.data_path_layout.prefix_ledit,
colors.WHITE,
qt_import.QPalette.Base,
)
colors.set_widget_color(
self.data_path_layout.run_number_ledit,
colors.WHITE,
qt_import.QPalette.Base,
)
colors.set_widget_color(
self.data_path_layout.folder_ledit,
colors.WHITE,
qt_import.QPalette.Base,
)
self.path_conflict_state = conflict
def __init__(self, parent=None, name=None, fl=0, xray_imaging_params=None):
qt_import.QWidget.__init__(self, parent, qt_import.Qt.WindowFlags(fl))
if name is not None:
self.setObjectName(name)
# Internal variables --------------------------------------------------
# Properties ----------------------------------------------------------
# Signals -------------------------------------------------------------
# Slots ---------------------------------------------------------------
# Graphic elements ----------------------------------------------------
self._xray_imaging_parameters = xray_imaging_params
self._xray_imaging_mib = DataModelInputBinder(
self._xray_imaging_parameters)
self._parameters_widget = qt_import.load_ui_file(
"xray_imaging_parameters_widget_layout.ui")
# Layout --------------------------------------------------------------
__main_vlayout = qt_import.QVBoxLayout(self)
__main_vlayout.addWidget(self._parameters_widget)
__main_vlayout.setSpacing(0)
__main_vlayout.setContentsMargins(0, 0, 0, 0)
# SizePolicies --------------------------------------------------------
# Qt signal/slot connections ------------------------------------------
self._parameters_widget.ff_pre_cbox.toggled.connect(
self.ff_pre_toggled)
self._parameters_widget.ff_post_cbox.toggled.connect(
self.ff_post_toggled)
self._parameters_widget.add_button.pressed.connect(
self.add_distance_pressed)
self._parameters_widget.remove_button.pressed.connect(
self.remove_distance_pressed)
# Other ---------------------------------------------------------------
# self.detector_distance_validator = qt_import.QIntValidator(
# 0, 99999, self._parameters_widget.detector_distance_ledit
# )
self.detector_distance_validator = qt_import.QDoubleValidator(
0, 99999, 2, self._parameters_widget.detector_distance_ledit)
self._xray_imaging_mib.bind_value_update(
"camera_write_data", self._parameters_widget.store_data_cbox, bool,
None)
self._xray_imaging_mib.bind_value_update(
"ff_pre", self._parameters_widget.ff_pre_cbox, bool, None)
self._xray_imaging_mib.bind_value_update(
"ff_post", self._parameters_widget.ff_post_cbox, bool, None)
self._xray_imaging_mib.bind_value_update(
"ff_apply", self._parameters_widget.ff_apply_cbox, bool, None)
self._xray_imaging_mib.bind_value_update(
"ff_ssim_enabled", self._parameters_widget.ff_ssim_cbox, bool,
None)
self._xray_imaging_mib.bind_value_update(
"ff_num_images", self._parameters_widget.ff_num_images_ledit, int,
None)
self._xray_imaging_mib.bind_value_update(
"sample_offset_a",
self._parameters_widget.ff_offset_a_ledit,
float,
None,
)
self._xray_imaging_mib.bind_value_update(
"sample_offset_b",
self._parameters_widget.ff_offset_b_ledit,
float,
None,
)
self._xray_imaging_mib.bind_value_update(
"sample_offset_c",
self._parameters_widget.ff_offset_c_ledit,
float,
None,
)
self._xray_imaging_mib.bind_value_update(
"detector_distance",
self._parameters_widget.detector_distance_ledit,
float,
self.detector_distance_validator,
)
class AdvancedParametersWidget(qt_import.QWidget):
def __init__(self, parent=None, name="advanced_parameters_widget"):
qt_import.QWidget.__init__(self, parent)
# Internal values -----------------------------------------------------
self._data_collection = None
self._tree_view_item = None
self._acquisition_mib = None
# Properties ----------------------------------------------------------
# Signals -------------------------------------------------------------
# Slots ---------------------------------------------------------------
# Graphic elements ----------------------------------------------------
_dc_parameters_widget = qt_import.QWidget(self)
self._data_path_widget = DataPathWidget(_dc_parameters_widget)
self._acq_widget = AcquisitionWidget(_dc_parameters_widget,
layout="horizontal")
# Layout --------------------------------------------------------------
_dc_parameters_widget_layout = qt_import.QVBoxLayout(
_dc_parameters_widget)
_dc_parameters_widget_layout.addWidget(self._data_path_widget)
_dc_parameters_widget_layout.addWidget(self._acq_widget)
_dc_parameters_widget_layout.setSpacing(2)
_dc_parameters_widget_layout.addStretch(10)
_dc_parameters_widget_layout.setContentsMargins(0, 0, 0, 0)
_main_hlayout = qt_import.QHBoxLayout(self)
_main_hlayout.addWidget(_dc_parameters_widget)
_main_hlayout.setSpacing(2)
_main_hlayout.setContentsMargins(2, 2, 2, 2)
_main_hlayout.addStretch(0)
# Qt signal/slot connections ------------------------------------------
# self._acq_widget.acqParametersChangedSignal.\
# connect(self.acq_parameters_changed)
# self._data_path_widget.pathTemplateChangedSignal.\
# connect(self.acq_parameters_changed)
self._acq_widget.madEnergySelectedSignal.connect(
self.mad_energy_selected)
# Ohter ---------------------------------------------------------------
self._acq_widget.use_osc_start(False)
self._acq_widget.acq_widget_layout.mad_cbox.hide()
self._acq_widget.acq_widget_layout.energies_combo.hide()
self._acq_widget.acq_widget_layout.shutterless_cbx.hide()
def mad_energy_selected(self, name, energy, state):
path_template = self._data_collection.acquisitions[0].path_template
if state:
path_template.mad_prefix = name
else:
path_template.mad_prefix = ""
run_number = HWR.beamline.queue_model.get_next_run_number(
path_template)
self._data_path_widget.set_run_number(run_number)
self._data_path_widget.set_prefix(path_template.base_prefix)
model = self._tree_view_item.get_model()
model.set_name(path_template.get_prefix())
self._tree_view_item.setText(0, model.get_name())
def populate_widget(self, tree_view_item, data_collection):
self._tree_view_item = tree_view_item
self._data_collection = data_collection
# if isinstance(tree_view_item, queue_item.XrayCenteringQueueItem):
# self._data_collection = tree_view_item.get_model().reference_image_collection
# else:
# self._data_collection = tree_view_item.get_model()
executed = self._data_collection.is_executed()
self._acq_widget.setEnabled(not executed)
self._data_path_widget.setEnabled(not executed)
self._acquisition_mib = DataModelInputBinder(
self._data_collection.acquisitions[0].acquisition_parameters)
# The acq_widget sends a signal to the path_widget, and it relies
# on that both models upto date, we need to refactor this part
# so that both models are set before taking ceratin actions.
# This workaround, works for the time beeing.
self._data_path_widget.update_data_model(
self._data_collection.acquisitions[0].path_template)
self._acq_widget.update_data_model(
self._data_collection.acquisitions[0].acquisition_parameters,
self._data_collection.acquisitions[0].path_template,
)
# self._acq_widget.use_osc_start(False)
self._acq_widget.acq_widget_layout.num_images_ledit.setDisabled(
data_collection.is_mesh())
invalid = self._acquisition_mib.validate_all()
if invalid:
msg = (
"This data collection has one or more incorrect parameters," +
" correct the fields marked in red to solve the problem.")
logging.getLogger("GUI").warning(msg)