def initialize_input(self):
self.interface = self.input_dev.interface
try:
self.atlas_device = setup_atlas_device(self.input_dev)
except Exception:
self.logger.exception("Exception while initializing sensor")
def initialize(self):
self.interface = self.input_dev.interface
try:
self.atlas_device = setup_atlas_device(self.input_dev)
except Exception:
self.logger.exception("Exception while initializing sensor")
# Throw out first measurement of Atlas Scientific sensor, as it may be prone to error
self.get_measurement()
def initialize_input(self):
self.interface = self.input_dev.interface
try:
self.atlas_device = setup_atlas_device(self.input_dev)
if self.led == 'on':
self.atlas_device.query('L,1')
elif self.led == 'off':
self.atlas_device.query('L,0')
except Exception:
self.logger.exception("Exception while initializing sensor")
def initialize_input(self):
self.interface = self.input_dev.interface
try:
self.atlas_device = setup_atlas_device(self.input_dev)
if self.temperature_comp_meas_measurement_id:
self.atlas_command = AtlasScientificCommand(self.input_dev, sensor=self.atlas_device)
except Exception:
self.logger.exception("Exception while initializing sensor")
# Throw out first measurement of Atlas Scientific sensor, as it may be prone to error
self.get_measurement()
def setup_atlas_ec_measure(input_id):
"""
Acquire a measurement from the Atlas Scientific EC input and return it
Used during calibration to display the current EC to the user
"""
if not utils_general.user_has_permission('edit_controllers'):
return redirect(url_for('routes_page.page_atlas_ec_calibrate'))
selected_input = Input.query.filter_by(unique_id=input_id).first()
ec = None
error = None
atlas_command = setup_atlas_device(selected_input)
if selected_input.interface in ['FTDI', 'UART']:
ec_status, ec_list = atlas_command.query('R')
if ec_list:
logger.debug("Returned list: {lines}".format(lines=ec_list))
# Find float value in list
float_value = None
for each_split in ec_list:
if str_is_float(each_split):
float_value = each_split
break
# 'check probe' indicates an error reading the sensor
if 'check probe' in ec_list:
error = '"check probe" returned from input'
# if a string resembling a float value is returned, this
# is our measurement value
elif str_is_float(float_value):
ec = float(float_value)
logger.debug('Found float value: {val}'.format(val=ec))
else:
logger.error('Value or "check probe" not found in list: '
'{val}'.format(val=ec_list))
elif selected_input.interface == 'I2C':
ec_status, ec_str = atlas_command.query('R')
if ec_status == 'error':
error = "Input read unsuccessful: {err}".format(err=ec_str)
elif ec_status == 'success':
ec = ec_str
if error:
logger.error(error)
return error, 204
else:
return ec
def initialize_input(self):
self.interface = self.input_dev.interface
self.calibrate_sensor_measure = self.input_dev.calibrate_sensor_measure
try:
self.atlas_device = setup_atlas_device(self.input_dev)
# Enabling DO, disabling % saturation
self.atlas_device.write("O,mg,1")
self.atlas_device.write("O,%,0")
ret_val = self.atlas_device.write("O,?")
self.logger.info("Parameters enabled: {}".format(ret_val))
except Exception:
self.logger.exception("Exception while initializing sensor")
# Throw out first measurement of Atlas Scientific sensor, as it may be prone to error
self.get_measurement()
def initialize(self):
self.interface = self.input_dev.interface
try:
self.atlas_device = setup_atlas_device(self.input_dev)
# Enabling DO, disabling % saturation
self.atlas_device.query("O,mg,1")
self.atlas_device.query("O,%,0")
ret_status, ret_val = self.atlas_device.query("O,?")
self.logger.info("Parameters enabled: {}".format(ret_val))
if self.temperature_comp_meas_measurement_id:
self.atlas_command = AtlasScientificCommand(
self.input_dev, sensor=self.atlas_device)
except Exception:
self.logger.exception("Exception while initializing sensor")
# Throw out first measurement of Atlas Scientific sensor, as it may be prone to error
self.get_measurement()
def initialize_input(self):
self.interface = self.input_dev.interface
try:
self.atlas_device = setup_atlas_device(self.input_dev)
if self.led == 'on':
self.atlas_device.query('L,1')
elif self.led == 'off':
self.atlas_device.query('L,0')
if self.is_enabled(0):
self.atlas_device.query('O,T,1')
else:
self.atlas_device.query('O,T,0')
if self.is_enabled(1):
self.atlas_device.query('O,HUM,1')
else:
self.atlas_device.query('O,HUM,0')
if self.is_enabled(2):
self.atlas_device.query('O,Dew,1')
else:
self.atlas_device.query('O,Dew,0')
except Exception:
self.logger.exception("Exception while initializing sensor")
def setup_atlas_ezo_pump():
"""
Step-by-step tool for calibrating the Atlas Scientific peristaltic pump
"""
if not utils_general.user_has_permission('edit_controllers'):
return redirect(url_for('routes_general.home'))
form_ezo_pump_calibrate = forms_calibration.CalibrationAtlasEZOPump()
output = Output.query.filter(Output.output_type == 'atlas_ezo_pmp').all()
ui_stage = 'start'
backend_stage = None
selected_output = None
output_device_name = None
complete_with_error = None
if form_ezo_pump_calibrate.hidden_current_stage.data:
backend_stage = form_ezo_pump_calibrate.hidden_current_stage.data
if form_ezo_pump_calibrate.go_to_last_stage.data:
selected_output = Output.query.filter(
Output.unique_id ==
form_ezo_pump_calibrate.hidden_output_id.data).first()
output_device_name = selected_output.name
# Clear Calibration memory
if form_ezo_pump_calibrate.clear_calibration.data:
selected_output = Output.query.filter(
Output.unique_id ==
form_ezo_pump_calibrate.selected_output_id.data).first()
if not selected_output:
flash(
'Output not found: {}'.format(
form_ezo_pump_calibrate.selected_output_id.data), 'error')
else:
atlas_command = setup_atlas_device(selected_output)
if atlas_command:
write_cmd = 'Cal,clear'
logger.error("EZO-PMP command: {}".format(write_cmd))
status, msg = atlas_command.query(write_cmd)
info_str = "{act}: {lvl}: {resp}".format(
act=TRANSLATIONS['calibration']['title'],
lvl=write_cmd,
resp=msg)
if status == 'success':
flash(info_str, 'success')
else:
flash(info_str, 'error')
else:
flash("Error initializing pump class", 'error')
elif form_ezo_pump_calibrate.start_calibration.data:
ui_stage = 'question_ml_dispensed'
selected_output = Output.query.filter(
Output.unique_id ==
form_ezo_pump_calibrate.selected_output_id.data).first()
if not selected_output:
flash(
'Output not found: {}'.format(
form_ezo_pump_calibrate.selected_output_id.data), 'error')
else:
output_device_name = selected_output.name
atlas_command = setup_atlas_device(selected_output)
if atlas_command:
if (form_ezo_pump_calibrate.ml_to_dispense.data
and form_ezo_pump_calibrate.ml_to_dispense.data > 0):
write_cmd = 'D,{}'.format(
form_ezo_pump_calibrate.ml_to_dispense.data)
logger.error("EZO-PMP command: {}".format(write_cmd))
status, msg = atlas_command.query(write_cmd)
info_str = "{act}: {lvl}: {resp}".format(
act=TRANSLATIONS['calibration']['title'],
lvl=write_cmd,
resp=msg)
if status == 'success':
flash(info_str, 'success')
else:
flash(info_str, 'error')
else:
flash(
"Invalid amount to dispense: '{}'".format(
form_ezo_pump_calibrate.ml_to_dispense.data),
'error')
else:
flash("Error initializing pump class", 'error')
elif backend_stage == 'question_ml_dispensed':
ui_stage = 'complete'
output_device_name = selected_output.name
atlas_command = setup_atlas_device(selected_output)
if atlas_command:
if (form_ezo_pump_calibrate.ml_dispensed.data
and form_ezo_pump_calibrate.ml_dispensed.data > 0):
write_cmd = 'Cal,{}'.format(
form_ezo_pump_calibrate.ml_dispensed.data)
logger.error("EZO-PMP command: {}".format(write_cmd))
status, msg = atlas_command.query(write_cmd)
info_str = "{act}: {lvl}: {resp}".format(
act=TRANSLATIONS['calibration']['title'],
lvl=write_cmd,
resp=msg)
if status == 'success':
flash(info_str, 'success')
else:
flash(info_str, 'error')
else:
flash(
"Invalid amount dispensed: '{}'".format(
form_ezo_pump_calibrate.ml_dispensed.data), 'error')
else:
flash("Error initializing pump class", 'error')
return render_template('tools/calibration_options/atlas_ezo_pump.html',
complete_with_error=complete_with_error,
form_ezo_pump_calibrate=form_ezo_pump_calibrate,
output=output,
output_device_name=output_device_name,
selected_output=selected_output,
ui_stage=ui_stage)
def setup_output(self):
self.setup_output_variables(OUTPUT_INFORMATION)
self.interface = self.output.interface
self.atlas_device = setup_atlas_device(self.output)
self.output_setup = True