def preprocess(self, nb, resources):
"""Concatenates the cells from the header and footer notebooks to the
given cells.
"""
new_cells = []
# header
if self.header:
with open(self.header, 'r') as fh:
header_nb = read_nb(fh, as_version=current_nbformat)
new_cells.extend(header_nb.cells)
# body
new_cells.extend(nb.cells)
# footer
if self.footer:
with open(self.footer, 'r') as fh:
footer_nb = read_nb(fh, as_version=current_nbformat)
new_cells.extend(footer_nb.cells)
nb.cells = new_cells
super(IncludeHeaderFooter, self).preprocess(nb, resources)
return nb, resources
def preprocess(self, nb, resources):
"""Concatenates the cells from the header and footer notebooks to the
given cells.
"""
new_cells = []
# header
if self.header:
with open(self.header, 'r') as fh:
header_nb = read_nb(fh, as_version=current_nbformat)
new_cells.extend(header_nb.cells)
# body
new_cells.extend(nb.cells)
# footer
if self.footer:
with open(self.footer, 'r') as fh:
footer_nb = read_nb(fh, as_version=current_nbformat)
new_cells.extend(footer_nb.cells)
nb.cells = new_cells
super(IncludeHeaderFooter, self).preprocess(nb, resources)
return nb, resources
def transform(nb_path, *fs):
with open(nb_path, "r") as fp:
nb = read_nb(fp, as_version=4)
for f in fs:
f(nb)
with open(nb_path, "w") as fp:
write_nb(nb, nb_path)
def validate(
self, filename: str
) -> typing.Dict[str, typing.List[typing.Dict[str, str]]]:
self.log.info("Validating '{}'".format(os.path.abspath(filename)))
basename = os.path.basename(filename)
dirname = os.path.dirname(filename)
with utils.chdir(dirname):
nb = read_nb(basename, as_version=current_nbformat)
type_changed = self._get_type_changed_cells(nb)
if len(type_changed) > 0:
results = {}
results['type_changed'] = [{
"source":
cell.source.strip(),
"old_type":
cell.cell_type,
"new_type":
cell.metadata.nbgrader.cell_type
} for cell in type_changed]
return results
with utils.chdir(dirname):
nb = self._preprocess(nb)
changed = self._get_changed_cells(nb)
passed = self._get_passed_cells(nb)
failed = self._get_failed_cells(nb)
results = {}
if not self.ignore_checksums and len(changed) > 0:
results['changed'] = [{
"source": cell.source.strip()
} for cell in changed]
elif self.invert:
if len(passed) > 0:
results['passed'] = [{
"source": cell.source.strip()
} for cell in passed]
else:
if len(failed) > 0:
results['failed'] = [{
"source":
cell.source.strip(),
"error":
ansi2html(self._extract_error(cell)),
"raw_error":
self._extract_error(cell)
} for cell in failed]
return results
def verify_notebook(self, nbfile):
"""
verify_notebook: Runs a notebook and ensures that all cells execute without errors.
"""
from nbformat import read as read_nb, NO_CONVERT
try:
pass
# First newline avoids the confusing "F"/"." output of unittest
# print("\nTesting " + nbfile)
nb = read_nb(nbfile, NO_CONVERT)
self.preprocessor.preprocess(nb, {})
except Exception as err:
self.fail(err)
def verify_notebook(self, nbfile):
"""
verify_notebook: Runs a notebook and ensures that all cells execute without errors.
"""
from nbformat import read as read_nb, NO_CONVERT
try:
# First newline avoids the confusing "F"/"." output of unittest
print("\nTesting " + nbfile)
nb = read_nb(nbfile, NO_CONVERT)
if self._in_pyspark():
nb = self.edit_notebook(nb)
self.preprocessor.preprocess(nb, {})
except Exception as err:
self.fail(err)
def validate(self, filename):
self.log.info("Validating '{}'".format(os.path.abspath(filename)))
basename = os.path.basename(filename)
dirname = os.path.dirname(filename)
with utils.chdir(dirname):
nb = read_nb(basename, as_version=current_nbformat)
type_changed = self._get_type_changed_cells(nb)
if len(type_changed) > 0:
results = {}
results['type_changed'] = [{
"source": cell.source.strip(),
"old_type": cell.cell_type,
"new_type": cell.metadata.nbgrader.cell_type
} for cell in type_changed]
return results
# Changing directories to enable validation to run in the same
# environment as the original notebook.
with utils.chdir(dirname):
nb = self._preprocess(nb)
changed = self._get_changed_cells(nb)
passed = self._get_passed_cells(nb)
failed = self._get_failed_cells(nb)
results = {}
if not self.ignore_checksums and len(changed) > 0:
results['changed'] = [{
"source": cell.source.strip()
} for cell in changed]
elif self.invert:
if len(passed) > 0:
results['passed'] = [{
"source": cell.source.strip()
} for cell in passed]
else:
if len(failed) > 0:
results['failed'] = [{
"source": cell.source.strip(),
"error": ansi2html(self._extract_error(cell)),
"raw_error": self._extract_error(cell)
} for cell in failed]
return results
def validate(self, filename):
self.log.info("Validating '{}'".format(os.path.abspath(filename)))
basename = os.path.basename(filename)
dirname = os.path.dirname(filename)
with utils.chdir(dirname):
nb = read_nb(basename, as_version=current_nbformat)
type_changed = self._get_type_changed_cells(nb)
if len(type_changed) > 0:
results = {}
results['type_changed'] = [{
"source": cell.source.strip(),
"old_type": cell.cell_type,
"new_type": cell.metadata.nbgrader.cell_type
} for cell in type_changed]
return results
with utils.chdir(dirname):
nb = self._preprocess(nb)
changed = self._get_changed_cells(nb)
passed = self._get_passed_cells(nb)
failed = self._get_failed_cells(nb)
results = {}
if not self.ignore_checksums and len(changed) > 0:
results['changed'] = [{
"source": cell.source.strip()
} for cell in changed]
elif self.invert:
if len(passed) > 0:
results['passed'] = [{
"source": cell.source.strip()
} for cell in passed]
else:
if len(failed) > 0:
results['failed'] = [{
"source": cell.source.strip(),
"error": ansi2html(self._extract_error(cell)),
"raw_error": self._extract_error(cell)
} for cell in failed]
return results
def load_example(example):
with open(example + ".ipynb", "r") as f:
nb = read_nb(f, 4)
return nb
def _read_nb(self, filename):
fullpath = os.path.join(os.path.dirname(__file__), filename)
with open(fullpath, "r") as fh:
nb = read_nb(fh, as_version=current_nbformat)
return nb
def _read_nb(self, filename):
fullpath = os.path.join(os.path.dirname(__file__), filename)
with open(fullpath, "r") as fh:
nb = read_nb(fh, as_version=current_nbformat)
return nb
