def test__children(self):
blk = Block(name="a block")
blk.recordingchannelgroups = self.rcg
blk.segments = self.seg
blk.create_many_to_one_relationship()
self.assertEqual(blk._container_child_objects, ("Segment", "RecordingChannelGroup"))
self.assertEqual(blk._data_child_objects, ())
self.assertEqual(blk._single_parent_objects, ())
self.assertEqual(blk._multi_child_objects, ())
self.assertEqual(blk._multi_parent_objects, ())
self.assertEqual(blk._child_properties, ("Unit", "RecordingChannel"))
self.assertEqual(blk._single_child_objects, ("Segment", "RecordingChannelGroup"))
self.assertEqual(blk._container_child_containers, ("segments", "recordingchannelgroups"))
self.assertEqual(blk._data_child_containers, ())
self.assertEqual(blk._single_child_containers, ("segments", "recordingchannelgroups"))
self.assertEqual(blk._single_parent_containers, ())
self.assertEqual(blk._multi_child_containers, ())
self.assertEqual(blk._multi_parent_containers, ())
self.assertEqual(blk._child_objects, ("Segment", "RecordingChannelGroup"))
self.assertEqual(blk._child_containers, ("segments", "recordingchannelgroups"))
self.assertEqual(blk._parent_objects, ())
self.assertEqual(blk._parent_containers, ())
self.assertEqual(blk.parents, ())
self.assertEqual(len(blk.children), len(self.seg) + len(self.rcg))
self.assertEqual(blk.children[0].name, self.segnames[0])
self.assertEqual(blk.children[1].name, self.segnames[1])
self.assertEqual(blk.children[2].name, self.segnames[2])
self.assertEqual(blk.children[3].name, self.segnames[3])
self.assertEqual(blk.children[4].name, self.rcgnames[0])
self.assertEqual(blk.children[5].name, self.rcgnames[1])
def test_block_list_units(self):
blk = Block(name='a block')
blk.recordingchannelgroups = [self.rcg1, self.rcg2]
blk.create_many_to_one_relationship()
#assert_neo_object_is_compliant(blk)
unitres1 = [unit.name for unit in blk.recordingchannelgroups[0].units]
unitres2 = [unit.name for unit in blk.recordingchannelgroups[1].units]
unitres = [unit.name for unit in blk.list_units]
self.assertEqual(self.unitnames1, unitres1)
self.assertEqual(self.unitnames2, unitres2)
self.assertEqual(self.unitnames, unitres)
def test_block_list_units(self):
blk = Block(name="a block")
blk.recordingchannelgroups = [self.rcg1, self.rcg2]
blk.create_many_to_one_relationship()
# assert_neo_object_is_compliant(blk)
unitres1 = [unit.name for unit in blk.recordingchannelgroups[0].units]
unitres2 = [unit.name for unit in blk.recordingchannelgroups[1].units]
unitres = [unit.name for unit in blk.list_units]
self.assertEqual(self.unitnames1, unitres1)
self.assertEqual(self.unitnames2, unitres2)
self.assertEqual(self.unitnames, unitres)
def test_block_list_recordingchannel(self):
blk = Block(name="a block")
blk.recordingchannelgroups = [self.rcg1, self.rcg2]
blk.create_many_to_one_relationship()
# assert_neo_object_is_compliant(blk)
chanres1 = [chan.name for chan in blk.recordingchannelgroups[0].recordingchannels]
chanres2 = [chan.name for chan in blk.recordingchannelgroups[1].recordingchannels]
chanres = [chan.name for chan in blk.list_recordingchannels]
self.assertEqual(self.channames1, chanres1)
self.assertEqual(self.channames2, chanres2)
self.assertEqual(self.channames, chanres)
def test_block_list_recordingchannel(self):
blk = Block(name='a block')
blk.recordingchannelgroups = [self.rcg1, self.rcg2]
blk.create_many_to_one_relationship()
#assert_neo_object_is_compliant(blk)
chanres1 = [chan.name for chan in
blk.recordingchannelgroups[0].recordingchannels]
chanres2 = [chan.name for chan in
blk.recordingchannelgroups[1].recordingchannels]
chanres = [chan.name for chan in blk.list_recordingchannels]
self.assertEqual(self.channames1, chanres1)
self.assertEqual(self.channames2, chanres2)
self.assertEqual(self.channames, chanres)
def __init__(self, parameters, full_datastore, replace=False):
ParametrizedObject.__init__(self, parameters)
# we will hold the recordings as one neo Block
self.block = Block()
self.analysis_results = []
self.replace = replace
self.sensory_stimulus = collections.OrderedDict()
self.full_datastore = full_datastore # should be self if actually the
def test_block_merge(self):
blk1 = Block(name='block 1')
blk2 = Block(name='block 2')
rcg3 = RecordingChannelGroup(name=self.rcgname1)
rcg3.units = self.units1 + [self.units2[0]]
rcg3.recordingchannels = self.chan1 + [self.chan2[1]]
blk1.recordingchannelgroups = [self.rcg1]
blk2.recordingchannelgroups = [self.rcg2, rcg3]
blk1.segments = self.seg1
blk2.segments = self.seg2
blk1.merge(blk2)
rcgres1 = [rcg.name for rcg in blk1.recordingchannelgroups]
rcgres2 = [rcg.name for rcg in blk2.recordingchannelgroups]
segres1 = [seg.name for seg in blk1.segments]
segres2 = [seg.name for seg in blk2.segments]
chanres1 = [chan.name for chan in blk1.list_recordingchannels]
chanres2 = [chan.name for chan in blk2.list_recordingchannels]
unitres1 = [unit.name for unit in blk1.list_units]
unitres2 = [unit.name for unit in blk2.list_units]
self.assertEqual(rcgres1, [self.rcgname1, self.rcgname2])
self.assertEqual(rcgres2, [self.rcgname2, self.rcgname1])
self.assertEqual(segres1, self.segnames)
self.assertEqual(segres2, self.segnames2)
self.assertEqual(chanres1, self.channames1 + self.channames2[-2::-1])
self.assertEqual(chanres2, self.channames2[:-1] + self.channames1)
self.assertEqual(unitres1, self.unitnames)
self.assertEqual(unitres2, self.unitnames2[:-1] + self.unitnames1)
def test_block_merge(self):
blk1 = Block(name="block 1")
blk2 = Block(name="block 2")
rcg3 = RecordingChannelGroup(name=self.rcgname1)
rcg3.units = self.units1 + [self.units2[0]]
rcg3.recordingchannels = self.chan1 + [self.chan2[1]]
blk1.recordingchannelgroups = [self.rcg1]
blk2.recordingchannelgroups = [self.rcg2, rcg3]
blk1.segments = self.seg1
blk2.segments = self.seg2
blk1.merge(blk2)
rcgres1 = [rcg.name for rcg in blk1.recordingchannelgroups]
rcgres2 = [rcg.name for rcg in blk2.recordingchannelgroups]
segres1 = [seg.name for seg in blk1.segments]
segres2 = [seg.name for seg in blk2.segments]
chanres1 = [chan.name for chan in blk1.list_recordingchannels]
chanres2 = [chan.name for chan in blk2.list_recordingchannels]
unitres1 = [unit.name for unit in blk1.list_units]
unitres2 = [unit.name for unit in blk2.list_units]
self.assertEqual(rcgres1, [self.rcgname1, self.rcgname2])
self.assertEqual(rcgres2, [self.rcgname2, self.rcgname1])
self.assertEqual(segres1, self.segnames)
self.assertEqual(segres2, self.segnames2)
self.assertEqual(chanres1, self.channames1 + self.channames2[-2::-1])
self.assertEqual(chanres2, self.channames2[:-1] + self.channames1)
self.assertEqual(unitres1, self.unitnames)
self.assertEqual(unitres2, self.unitnames2[:-1] + self.unitnames1)
def test__children(self):
blk = Block(name='a block')
blk.recordingchannelgroups = self.rcg
blk.segments = self.seg
blk.create_many_to_one_relationship()
self.assertEqual(blk._container_child_objects,
('Segment', 'RecordingChannelGroup'))
self.assertEqual(blk._data_child_objects, ())
self.assertEqual(blk._single_parent_objects, ())
self.assertEqual(blk._multi_child_objects, ())
self.assertEqual(blk._multi_parent_objects, ())
self.assertEqual(blk._child_properties, ('Unit', 'RecordingChannel'))
self.assertEqual(blk._single_child_objects,
('Segment', 'RecordingChannelGroup'))
self.assertEqual(blk._container_child_containers,
('segments', 'recordingchannelgroups'))
self.assertEqual(blk._data_child_containers, ())
self.assertEqual(blk._single_child_containers,
('segments', 'recordingchannelgroups'))
self.assertEqual(blk._single_parent_containers, ())
self.assertEqual(blk._multi_child_containers, ())
self.assertEqual(blk._multi_parent_containers, ())
self.assertEqual(blk._child_objects,
('Segment', 'RecordingChannelGroup'))
self.assertEqual(blk._child_containers,
('segments', 'recordingchannelgroups'))
self.assertEqual(blk._parent_objects, ())
self.assertEqual(blk._parent_containers, ())
self.assertEqual(blk.parents, ())
self.assertEqual(len(blk.children), len(self.seg) + len(self.rcg))
self.assertEqual(blk.children[0].name, self.segnames[0])
self.assertEqual(blk.children[1].name, self.segnames[1])
self.assertEqual(blk.children[2].name, self.segnames[2])
self.assertEqual(blk.children[3].name, self.segnames[3])
self.assertEqual(blk.children[4].name, self.rcgnames[0])
self.assertEqual(blk.children[5].name, self.rcgnames[1])
def test_block_init(self):
blk = Block(name='a block')
assert_neo_object_is_compliant(blk)
self.assertEqual(blk.name, 'a block')
self.assertEqual(blk.file_origin, None)
def test_init(self):
b = Block(name='a block')
self.assertEqual(b.name, 'a block')
self.assertEqual(b.file_origin, None)
