def setUp(self):
BaseTestIO.setUp(self)
if sys.platform.startswith('win'):
distantfile = 'http://download.multichannelsystems.com/download_data/software/neuroshare/nsMCDLibrary_3.7b.zip'
localfile = os.path.join(tempfile.gettempdir(),'nsMCDLibrary_3.7b.zip')
if not os.path.exists(localfile):
urlretrieve(distantfile, localfile)
if platform.architecture()[0].startswith('64'):
self.dllname = os.path.join(tempfile.gettempdir(),'Matlab/Matlab-Import-Filter/Matlab_Interface/nsMCDLibrary64.dll')
if not os.path.exists(self.dllname):
zip = zipfile.ZipFile(localfile)
zip.extract('Matlab/Matlab-Import-Filter/Matlab_Interface/nsMCDLibrary64.dll', path = tempfile.gettempdir())
else:
self.dllname = os.path.join(tempfile.gettempdir(),'Matlab/Matlab-Import-Filter/Matlab_Interface/nsMCDLibrary.dll')
if not os.path.exists(self.dllname):
zip = zipfile.ZipFile(localfile)
zip.extract('Matlab/Matlab-Import-Filter/Matlab_Interface/nsMCDLibrary.dll', path = tempfile.gettempdir())
elif sys.platform.startswith('linux'):
distantfile = 'http://download.multichannelsystems.com/download_data/software/neuroshare/nsMCDLibrary_Linux64_3.7b.tar.gz'
localfile = os.path.join(tempfile.gettempdir(),'nsMCDLibrary_Linux64_3.7b.tar.gz')
if not os.path.exists(localfile):
urlretrieve(distantfile, localfile)
self.dllname = os.path.join(tempfile.gettempdir(),'nsMCDLibrary/nsMCDLibrary.so')
if not os.path.exists(self.dllname):
tar = tarfile.open(localfile)
tar.extract('nsMCDLibrary/nsMCDLibrary.so', path = tempfile.gettempdir())
else:
raise unittest.SkipTest("Not currently supported on OS X")
def setUp(self):
BaseTestIO.setUp(self)
filename = get_test_file_full_path(
ioclass=NestIO,
filename='0gid-1time-2Vm-3gex-4gin-1260-0.dat',
directory=self.local_test_dir, clean=False)
self.testIO = ColumnIO(filename=filename)
def setUp(self):
BaseTestIO.setUp(self)
filename = get_test_file_full_path(
ioclass=NestIO,
filename='0gid-1time-2Vm-3gex-4gin-1260-0.dat',
directory=self.local_test_dir, clean=False)
self.testIO = ColumnIO(filename=filename)
def test_write_read_single_spike(self):
block1 = Block()
seg = Segment('segment1')
spiketrain1 = SpikeTrain([1] * pq.s,
t_stop=10 * pq.s,
sampling_rate=1 * pq.Hz)
spiketrain1.annotate(yep='yop')
block1.segments.append(seg)
seg.spiketrains.append(spiketrain1)
# write block
filename = BaseTestIO.get_filename_path(self, 'matlabiotestfile.mat')
io1 = self.ioclass(filename)
io1.write_block(block1)
# read block
io2 = self.ioclass(filename)
block2 = io2.read_block()
self.assertEqual(block1.segments[0].spiketrains[0],
block2.segments[0].spiketrains[0])
# test annotations
spiketrain2 = block2.segments[0].spiketrains[0]
assert 'yep' in spiketrain2.annotations
assert spiketrain2.annotations['yep'] == 'yop'
def setUp(self):
BaseTestIO.setUp(self)
if sys.platform.startswith("win"):
distantfile = (
"http://download.multichannelsystems.com/download_data/software/neuroshare/nsMCDLibrary_3.7b.zip"
)
localfile = os.path.join(tempfile.gettempdir(), "nsMCDLibrary_3.7b.zip")
if not os.path.exists(localfile):
urlretrieve(distantfile, localfile)
if platform.architecture()[0].startswith("64"):
self.dllname = os.path.join(
tempfile.gettempdir(), "Matlab/Matlab-Import-Filter/Matlab_Interface/nsMCDLibrary64.dll"
)
if not os.path.exists(self.dllname):
zip = zipfile.ZipFile(localfile)
zip.extract(
"Matlab/Matlab-Import-Filter/Matlab_Interface/nsMCDLibrary64.dll", path=tempfile.gettempdir()
)
else:
self.dllname = os.path.join(
tempfile.gettempdir(), "Matlab/Matlab-Import-Filter/Matlab_Interface/nsMCDLibrary.dll"
)
if not os.path.exists(self.dllname):
zip = zipfile.ZipFile(localfile)
zip.extract(
"Matlab/Matlab-Import-Filter/Matlab_Interface/nsMCDLibrary.dll", path=tempfile.gettempdir()
)
elif sys.platform.startswith("linux"):
distantfile = "http://download.multichannelsystems.com/download_data/software/neuroshare/nsMCDLibrary_Linux64_3.7b.tar.gz"
localfile = os.path.join(tempfile.gettempdir(), "nsMCDLibrary_Linux64_3.7b.tar.gz")
if not os.path.exists(localfile):
urlretrieve(distantfile, localfile)
self.dllname = os.path.join(tempfile.gettempdir(), "nsMCDLibrary/nsMCDLibrary.so")
if not os.path.exists(self.dllname):
tar = tarfile.open(localfile)
tar.extract("nsMCDLibrary/nsMCDLibrary.so", path=tempfile.gettempdir())
def test_write_read_single_spike(self):
block1 = Block()
seg = Segment('segment1')
spiketrain = SpikeTrain([1] * pq.s, t_stop=10 * pq.s, sampling_rate=1 * pq.Hz)
block1.segments.append(seg)
seg.spiketrains.append(spiketrain)
# write block
filename = BaseTestIO.get_filename_path(self, 'matlabiotestfile.mat')
io1 = self.ioclass(filename)
io1.write_block(block1)
# read block
io2 = self.ioclass(filename)
block2 = io2.read_block()
self.assertEqual(block1.segments[0].spiketrains[0],
block2.segments[0].spiketrains[0])
def setUp(self):
auto_install_maxwell_hdf5_compression_plugin(force_download=False)
BaseTestIO.setUp(self)
def setUp(self):
BaseTestIO.setUp(self)
def setUp(self):
BaseTestIO.setUp(self)
filename = self.get_local_path(
'nest/0gid-1time-2Vm-3gex-4gin-1260-0.dat')
self.testIO = ColumnIO(filename=filename)
def setUp(self):
BaseTestIO.setUp(self)
