예제 #1
0
파일: igv.py 프로젝트: promodel/nesoni
 def spanners_3prime(self):
     for (name, spanners_fwd), (name1, spanners_rev) in itertools.izip(
         self.spanners_over(lambda item: item.ambiguous_depths[0].spanner_ends()),
         self.spanners_over(lambda item: item.ambiguous_depths[1].spanner_starts()),
         ):
         yield name, spanner.zip_spanners(
             spanner.map_spanner(sum, spanners_fwd),
             spanner.map_spanner(sum, spanners_rev),
             )
예제 #2
0
파일: igv.py 프로젝트: promodel/nesoni
 def spanners_total(self):
     for (name,fwd_spanner),(name1,rev_spanner) in itertools.izip(
         self.spanners_over(lambda item: item.ambiguous_depths[0].spanner()),
         self.spanners_over(lambda item: item.ambiguous_depths[1].spanner())
         ):
         yield name, spanner.zip_spanners(
             spanner.map_spanner(sum, fwd_spanner),
             spanner.map_spanner(sum, rev_spanner),
             )
예제 #3
0
파일: igv.py 프로젝트: promodel/nesoni
 def spanner_ambiguity(self):
     def ambiguity((depths, ambiguous_depths)):
         total_ambiguous = sum(ambiguous_depths)
         if not total_ambiguous:
             return (0.0,)
         else:
             return (1.0 - float(sum(depths)) / total_ambiguous,)
 
     for (name, spanner_depths), (name1, spanner_ambiguous_depths) in itertools.izip(
         self.spanners_over_unstranded(lambda item: item.depths),
         self.spanners_over_unstranded(lambda item: item.ambiguous_depths)):
         yield name, spanner.map_spanner(ambiguity, spanner.zip_spanners(spanner_depths, spanner_ambiguous_depths))
예제 #4
0
파일: igv.py 프로젝트: promodel/nesoni
 def normalize_spanners(self, spanners):
     normalize = self.normalizer()
     for name, a_spanner in spanners:
         yield name, spanner.map_spanner(normalize, a_spanner)