def alignTwoMessages(self, doInternalSlick, message1, message2):
# First we serialize the two messages
(serialMessages, format) = TypeConvertor.serializeMessages([message1, message2], self.unitSize)
debug = False
(score1, score2, score3, regex, mask) = _libNeedleman.alignTwoMessages(doInternalSlick, format, serialMessages, debug)
scores = (score1, score2, score3)
alignment = self.deserializeAlignment(regex, mask)
return (scores, alignment)
def align(self, doInternalSlick, messages):
# First we serialize the two messages
(serialMessages, format) = TypeConvertor.serializeMessages(messages, self.unitSize)
debug = False
(score1, score2, score3, regex, mask) = _libNeedleman.alignMessages(doInternalSlick, len(messages), format, serialMessages, self.cb_executionStatus, debug)
scores = (score1, score2, score3)
alignment = self.deserializeAlignment(regex, mask)
alignment = self.smoothAlignment(alignment)
return (alignment, scores)
def deserializeMessages(self, messages):
# First we serialize the messages
(serialMessages, format) = TypeConvertor.serializeMessages(messages, self.unitSize)
debug = False
return _libNeedleman.deserializeMessages(len(messages), format, serialMessages, debug)
