def test_get_flat_neurites():
n = load_neuron(Path(SWC_PATH, 'Neuron.swc'))
assert len(mt.get_flat_neurites(n, 1e-6, method='tolerance')) == 0
assert len(mt.get_flat_neurites(n, 0.1, method='ratio')) == 0
n = _make_flat(n)
assert len(mt.get_flat_neurites(n, 1e-6, method='tolerance')) == 4
assert len(mt.get_flat_neurites(n, 0.1, method='ratio')) == 4
def test_get_flat_neurites():
n = load_neuron(os.path.join(SWC_PATH, 'Neuron.swc'))
nt.assert_equal(len(mt.get_flat_neurites(n, 1e-6, method='tolerance')), 0)
nt.assert_equal(len(mt.get_flat_neurites(n, 0.1, method='ratio')), 0)
n = _make_flat(n)
nt.assert_equal(len(mt.get_flat_neurites(n, 1e-6, method='tolerance')), 4)
nt.assert_equal(len(mt.get_flat_neurites(n, 0.1, method='ratio')), 4)
def test_get_flat_neurites():
n = load_neuron(os.path.join(SWC_PATH, 'Neuron.swc'))
nt.assert_equal(len(mt.get_flat_neurites(n, 1e-6, method='tolerance')), 0)
nt.assert_equal(len(mt.get_flat_neurites(n, 0.1, method='ratio')), 0)
n = _make_flat(n)
nt.assert_equal(len(mt.get_flat_neurites(n, 1e-6, method='tolerance')), 4)
nt.assert_equal(len(mt.get_flat_neurites(n, 0.1, method='ratio')), 4)
def has_no_flat_neurites(neuron, tol=0.1, method='ratio'):
'''Check that a neuron has no flat neurites
Argument:
neuron : The neuron object to test
tol : the tolerance or the ratio
method : way of determining flatness, 'tolerance', 'ratio'
'''
return CheckResult(len(get_flat_neurites(neuron, tol, method)) == 0)
def has_no_flat_neurites(neuron, tol=0.1, method='ratio'):
'''Check that a neuron has no flat neurites
Arguments:
neuron(Neuron): The neuron object to test
tol(float): tolerance
method(string): way of determining flatness, 'tolerance', 'ratio' \
as described in :meth:`neurom.check.morphtree.get_flat_neurites`
Returns:
CheckResult with result
'''
return CheckResult(len(get_flat_neurites(neuron, tol, method)) == 0)
def has_no_flat_neurites(neuron, tol=0.1, method='ratio'):
'''Check that a neuron has no flat neurites
Arguments:
neuron(Neuron): The neuron object to test
tol(float): tolerance
method(string): way of determining flatness, 'tolerance', 'ratio'
as described in :meth:`neurom.check.morphtree.get_flat_neurites`
Returns:
CheckResult with result
'''
return CheckResult(len(get_flat_neurites(neuron, tol, method)) == 0)
