def test_parse_deprecated(): # Test deprecation with clear_and_catch_warnings() as w: warnings.filterwarnings('always', category=DeprecationWarning) op = Outputter() assert_equal(len(w), 1) op.initialize() # smoke test--no error. with clear_and_catch_warnings() as w: warnings.filterwarnings('always', category=DeprecationWarning) assert_raises(ValueError, parse_gifti_file) assert_equal(len(w), 1)
def test_parse_deprecated(): # Test deprecation with clear_and_catch_warnings() as w: warnings.filterwarnings("always", category=DeprecationWarning) op = Outputter() assert_equal(len(w), 1) op.initialize() # smoke test--no error. with clear_and_catch_warnings() as w: warnings.filterwarnings("always", category=DeprecationWarning) assert_raises(ValueError, parse_gifti_file) assert_equal(len(w), 1)
def _load_surf_files_gifti_gzip(surf_file): """Load surface data Gifti files which are gzipped. This function is used by load_surf_mesh and load_surf_data for extracting gzipped files. Part of the code can be removed while bumping nibabel 2.0.2 """ with gzip.open(surf_file) as f: as_bytes = f.read() if LooseVersion(nibabel.__version__) >= LooseVersion('2.1.0'): parser = gifti.GiftiImage.parser() parser.parse(as_bytes) gifti_img = parser.img else: from nibabel.gifti.parse_gifti_fast import ParserCreate, Outputter parser = ParserCreate() parser.buffer_text = True out = Outputter() parser.StartElementHandler = out.StartElementHandler parser.EndElementHandler = out.EndElementHandler parser.CharacterDataHandler = out.CharacterDataHandler parser.Parse(as_bytes) gifti_img = out.img return gifti_img