def test_fetch_atlas_pauli_2017():
data_dir = os.path.join(tst.tmpdir, 'pauli_2017')
data = atlas.fetch_atlas_pauli_2017('labels', data_dir)
assert_equal(len(data.labels), 16)
values = nibabel.load(data.maps).get_data()
assert_equal(len(np.unique(values)), 17)
data = atlas.fetch_atlas_pauli_2017('prob', data_dir)
assert_equal(nibabel.load(data.maps).shape[-1], 16)
def test_fetch_atlas_pauli_2017():
data_dir = os.path.join(tst.tmpdir, 'pauli_2017')
data = atlas.fetch_atlas_pauli_2017('labels', data_dir)
assert_equal(len(data.labels), 16)
values = nibabel.load(data.maps).get_data()
assert_equal(len(np.unique(values)), 17)
data = atlas.fetch_atlas_pauli_2017('prob', data_dir)
assert_equal(nibabel.load(data.maps).shape[-1], 16)
def test_fetch_atlas_pauli_2017(tmp_path):
data_dir = str(tmp_path / 'pauli_2017')
data = atlas.fetch_atlas_pauli_2017('det', data_dir)
assert len(data.labels) == 16
values = get_data(nibabel.load(data.maps))
assert len(np.unique(values)) == 17
data = atlas.fetch_atlas_pauli_2017('prob', data_dir)
assert nibabel.load(data.maps).shape[-1] == 16
with pytest.raises(NotImplementedError):
atlas.fetch_atlas_pauli_2017('junk for testing', data_dir)
def test_fetch_atlas_pauli_2017():
data_dir = os.path.join(tst.tmpdir, 'pauli_2017')
data = atlas.fetch_atlas_pauli_2017('det', data_dir)
assert_equal(len(data.labels), 16)
values = get_data(nibabel.load(data.maps))
assert_equal(len(np.unique(values)), 17)
data = atlas.fetch_atlas_pauli_2017('prob', data_dir)
assert_equal(nibabel.load(data.maps).shape[-1], 16)
with pytest.raises(NotImplementedError):
atlas.fetch_atlas_pauli_2017('junk for testing', data_dir)
def test_fetch_atlas_pauli_2017(tmp_path, request_mocker):
labels = pd.DataFrame({
"label": list(map("label_{}".format, range(16)))
}).to_csv(sep="\t", header=False)
det_atlas = data_gen.generate_labeled_regions((7, 6, 5), 16)
prob_atlas, _ = data_gen.generate_maps((7, 6, 5), 16)
request_mocker.url_mapping["*osf.io/6qrcb/*"] = labels
request_mocker.url_mapping["*osf.io/5mqfx/*"] = det_atlas
request_mocker.url_mapping["*osf.io/w8zq2/*"] = prob_atlas
data_dir = str(tmp_path / 'pauli_2017')
data = atlas.fetch_atlas_pauli_2017('det', data_dir)
assert len(data.labels) == 16
values = get_data(nibabel.load(data.maps))
assert len(np.unique(values)) == 17
data = atlas.fetch_atlas_pauli_2017('prob', data_dir)
assert nibabel.load(data.maps).shape[-1] == 16
with pytest.raises(NotImplementedError):
atlas.fetch_atlas_pauli_2017('junk for testing', data_dir)
