def test_fetch_surf_fsaverage(mesh, tmp_path, request_mocker):
# Define attribute list that nilearn meshs should contain
# (each attribute should eventually map to a _.gii.gz file
# named after the attribute)
mesh_attributes = {
"{}_{}".format(part, side)
for part in
["area", "curv", "infl", "pial", "sphere", "sulc", "thick", "white"]
for side in ["left", "right"]
}
# Mock fsaverage3, 4, 6, 7 download (with actual url)
fs_urls = [
"https://osf.io/asvjk/download",
"https://osf.io/x2j49/download",
"https://osf.io/um5ag/download",
"https://osf.io/q7a5k/download",
]
for fs_url in fs_urls:
request_mocker.url_mapping[fs_url] = list_to_archive(
["{}.gii.gz".format(name) for name in mesh_attributes])
dataset = struct.fetch_surf_fsaverage(mesh, data_dir=str(tmp_path))
assert mesh_attributes.issubset(set(dataset.keys()))
assert dataset.description != ''
def test_fetch_surf_fsaverage5_sphere(tmp_path, request_mocker):
for mesh in ['fsaverage5_sphere']:
dataset = struct.fetch_surf_fsaverage(mesh, data_dir=str(tmp_path))
keys = {'sphere_left', 'sphere_right'}
assert keys.issubset(set(dataset.keys()))
assert dataset.description != ''
def test_fetch_surf_fsaverage5_sphere():
for mesh in ['fsaverage5_sphere']:
dataset = struct.fetch_surf_fsaverage(mesh, data_dir=tst.tmpdir)
keys = {'sphere_left', 'sphere_right'}
assert keys.issubset(set(dataset.keys()))
assert_not_equal(dataset.description, '')
def test_fetch_surf_fsaverage5_sphere():
for mesh in ['fsaverage5_sphere']:
dataset = struct.fetch_surf_fsaverage(
mesh, data_dir=tst.tmpdir)
keys = {'sphere_left', 'sphere_right'}
assert keys.issubset(set(dataset.keys()))
assert_not_equal(dataset.description, '')
def test_fetch_surf_fsaverage5_sphere(tmp_path, request_mocker):
request_mocker.url_mapping["*b79fy*"] = list_to_archive(
["sphere_right.gii", "sphere_left.gii"])
for mesh in ['fsaverage5_sphere']:
dataset = struct.fetch_surf_fsaverage(mesh, data_dir=str(tmp_path))
keys = {'sphere_left', 'sphere_right'}
assert keys.issubset(set(dataset.keys()))
assert dataset.description != ''
def test_fetch_surf_fsaverage():
# for mesh in ['fsaverage5', 'fsaverage']:
for mesh in ['fsaverage']:
dataset = struct.fetch_surf_fsaverage(
mesh, data_dir=tst.tmpdir)
keys = {'pial_left', 'pial_right', 'infl_left', 'infl_right',
'sulc_left', 'sulc_right'}
assert keys.issubset(set(dataset.keys()))
assert_not_equal(dataset.description, '')
def test_fetch_surf_fsaverage(tmp_path, request_mocker):
# for mesh in ['fsaverage5', 'fsaverage']:
for mesh in ['fsaverage']:
dataset = struct.fetch_surf_fsaverage(
mesh, data_dir=str(tmp_path))
keys = {'pial_left', 'pial_right', 'infl_left', 'infl_right',
'sulc_left', 'sulc_right'}
assert keys.issubset(set(dataset.keys()))
assert dataset.description != ''
def test_fetch_surf_fsaverage(mesh, tmp_path, request_mocker):
keys = {
'pial_left', 'pial_right', 'infl_left', 'infl_right', 'sulc_left',
'sulc_right', 'white_left', 'white_right'
}
request_mocker.url_mapping["*fsaverage.tar.gz"] = list_to_archive([
Path("fsaverage") / "{}.gii".format(k.replace("infl", "inflated"))
for k in keys
])
dataset = struct.fetch_surf_fsaverage(mesh, data_dir=str(tmp_path))
assert keys.issubset(set(dataset.keys()))
assert dataset.description != ''
def test_fetch_surf_fsaverage():
# for mesh in ['fsaverage5', 'fsaverage']:
for mesh in ['fsaverage']:
dataset = struct.fetch_surf_fsaverage(mesh, data_dir=tst.tmpdir)
keys = {
'pial_left', 'pial_right', 'infl_left', 'infl_right', 'sulc_left',
'sulc_right'
}
assert keys.issubset(set(dataset.keys()))
assert_not_equal(dataset.description, '')