def test_brunel_round_trip(self):
path = 'network/Brunel2000/SR'
brunel = lookup(path)
save(brunel, path)
reloaded_brunel = lookup(path)
# FIXME: Should check a modified version of the model and then resave
# the original
self.assertEqual(brunel, reloaded_brunel)
def test_brunel_round_trip(self):
path = 'network/Brunel2000/SR'
brunel = lookup(path)
save(brunel, path)
reloaded_brunel = lookup(path)
# FIXME: Should check a modified version of the model and then resave
# the original
self.assertEqual(brunel, reloaded_brunel)
def test_liaf_round_trip(self):
path = 'neuron/LeakyIntegrateAndFire'
name = 'LeakyIntegrateAndFire'
liaf_doc = lookup(path)
liaf = lookup(path, name)
save(liaf, path, name)
reloaded_doc = lookup(path)
# FIXME: Should check a modified version of the model and then resave
# the original
self.assertEqual(liaf_doc, reloaded_doc)
def test_liaf_round_trip(self):
path = 'neuron/LeakyIntegrateAndFire'
name = 'LeakyIntegrateAndFire'
liaf_doc = lookup(path)
liaf = lookup(path, name)
save(liaf, path, name)
reloaded_doc = lookup(path)
# FIXME: Should check a modified version of the model and then resave
# the original
self.assertEqual(liaf_doc, reloaded_doc)
if args.mode == 'print':
document = Document()
print(
etree.tostring(E.NineML(create_static().to_xml(document),
parameterise_static().to_xml(document)),
encoding="UTF-8",
pretty_print=True,
xml_declaration=True))
elif args.mode == 'compare':
if ninemlcatalog is None:
raise Exception("NineML catalog is not installed")
local_version = create_static()
catalog_version = ninemlcatalog.load(catalog_path, local_version.name)
mismatch = local_version.find_mismatch(catalog_version)
if mismatch:
print("Local version differs from catalog version:\n{}".format(
mismatch))
else:
print("Local version matches catalog version")
elif args.mode == 'save':
if ninemlcatalog is None:
raise Exception("NineML catalog is not installed")
dynamics = create_static()
ninemlcatalog.save(dynamics, catalog_path, dynamics.name)
params = parameterise_static(
ninemlcatalog.load(catalog_path, dynamics.name))
ninemlcatalog.save(params, catalog_path, params.name)
print("Saved '{}' and '{}' to catalog".format(dynamics.name,
params.name))
document = Document()
print(etree.tostring(
E.NineML(
create_static().to_xml(document),
parameterise_static().to_xml(document)),
encoding="UTF-8", pretty_print=True, xml_declaration=True))
elif args.mode == 'compare':
if ninemlcatalog is None:
raise Exception(
"NineML catalog is not installed")
local_version = create_static()
catalog_version = ninemlcatalog.load(catalog_path,
local_version.name)
mismatch = local_version.find_mismatch(catalog_version)
if mismatch:
print ("Local version differs from catalog version:\n{}"
.format(mismatch))
else:
print("Local version matches catalog version")
elif args.mode == 'save':
if ninemlcatalog is None:
raise Exception(
"NineML catalog is not installed")
dynamics = create_static()
ninemlcatalog.save(dynamics, catalog_path, dynamics.name)
params = parameterise_static(
ninemlcatalog.load(catalog_path, dynamics.name))
ninemlcatalog.save(params, catalog_path, params.name)
print("Saved '{}' and '{}' to catalog".format(dynamics.name,
params.name))