def overlapping_chars(ann1, annotations):
annotations = [ann2 for ann2 in annotations if is_overlapping(ann1, ann2)]
if len(annotations) == 0 or not isinstance(ann1, Annotation):
return 0
this_overlaps = zeros(ann1[TLEN], dtype=bool)
source_overlaps = zeros(ann1[SLEN], dtype=bool)
for ann2 in annotations:
mark_overlapping_chars(this_overlaps, ann1, ann2, TOFF, TLEN)
mark_overlapping_chars(source_overlaps, ann1, ann2, SOFF, SLEN)
return npsum(this_overlaps) + npsum(source_overlaps)
def overlapping_chars(self, ann1, annotations):
"""Returns the number of chars in ann1 that overlap with the annotations."""
annotations = [ann2 for ann2 in annotations if self.is_overlapping(ann1, ann2)]
if len(annotations) == 0 or not isinstance(ann1, self.Annotation):
return 0
this_overlaps = zeros(ann1[self.TLEN], dtype=bool)
source_overlaps = zeros(ann1[self.SLEN], dtype=bool)
for ann2 in annotations:
self.mark_overlapping_chars(this_overlaps, ann1, ann2, self.TOFF, self.TLEN)
self.mark_overlapping_chars(source_overlaps, ann1, ann2, self.SOFF, self.SLEN)
return npsum(this_overlaps) + npsum(source_overlaps)
def overlapping_chars(ann1, annotations):
"""Returns the number of chars in ann1 that overlap with the annotations."""
annotations = [ann2 for ann2 in annotations if is_overlapping(ann1, ann2)]
if len(annotations) == 0 or not isinstance(ann1, Annotation):
return 0
this_overlaps = zeros(ann1[TLEN], dtype=bool)
source_overlaps = zeros(ann1[SLEN], dtype=bool)
for ann2 in annotations:
mark_overlapping_chars(this_overlaps, ann1, ann2, TOFF, TLEN)
mark_overlapping_chars(source_overlaps, ann1, ann2, SOFF, SLEN)
return npsum(this_overlaps) + npsum(source_overlaps)
def overlapping_chars(ann1, annotations, xoff, xlen):
"""Returns the number of chars in ann1 that overlap with the annotations."""
annotations = [ann2 for ann2 in annotations if is_overlapping(ann1, ann2)]
if len(annotations) == 0 or not isinstance(ann1, Annotation):
return 0
overlaps = zeros(ann1[xlen], dtype=bool)
for ann2 in annotations:
mark_overlapping_chars(overlaps, ann1, ann2, xoff, xlen)
return npsum(overlaps)
def count_chars2(annotations, xref, xoff, xlen):
num_chars = 0
max_length = max((ann[xoff] + ann[xlen] for ann in annotations))
char_bits = zeros(max_length, dtype=bool)
xref_index = index_annotations(annotations, xref)
for xref in xref_index:
annotations = xref_index[xref]
char_bits[:] = False
for ann in annotations:
char_bits[ann[xoff]:ann[xoff] + ann[xlen]] = True
num_chars += npsum(char_bits)
return num_chars
def count_chars2(self, annotations, xref, xoff, xlen):
"""Returns the number of cvhars covered by the annotations with regard to
the keys xref, xoff, and xlen."""
num_chars = 0
max_length = max((ann[xoff] + ann[xlen] for ann in annotations))
char_bits = zeros(max_length, dtype=bool)
xref_index = self.index_annotations(annotations, xref)
for xref in xref_index:
annotations = xref_index[xref]
char_bits[:] = False
for ann in annotations:
char_bits[ann[xoff]:ann[xoff] + ann[xlen]] = True
num_chars += npsum(char_bits)
return num_chars
def count_chars2(annotations, xref, xoff, xlen):
"""Returns the number of cvhars covered by the annotations with regard to
the keys xref, xoff, and xlen."""
num_chars = 0
max_length = max((ann[xoff] + ann[xlen] for ann in annotations))
char_bits = zeros(max_length, dtype=bool)
xref_index = index_annotations(annotations, xref)
for xref in xref_index:
annotations = xref_index[xref]
char_bits[:] = False
for ann in annotations:
char_bits[ann[xoff]:ann[xoff] + ann[xlen]] = True
num_chars += npsum(char_bits)
return num_chars
#! /usr/bin/python
