def LNKS_fobj(theta, stim, y, options):
'''
LNKS model objective function for using only firing rate as output
Returns objective value(J) and gradient(grad)
Inputs
------
theta: model parameters
stim: input data
y: output data (fr)
options (dictionary):
pathway: LNK pathway (1 or 2)
is_grad: bool (gradient on or off)
Outputs
-------
J: objective value
grad: gradient of objective
'''
J = LNKS_fobj_helper(LNKS_f, theta, stim, y, options)
if options['is_grad']:
grad = _obj.fobj_numel_grad(LNKS_fobj_helper, LNKS_f, theta, stim, y, options)
return J, grad
else:
return J
def LNKS_MP_fobj(theta, stim, y_data, options):
'''
LNKS model objective function for using both membrane potential and firing rate
Returns objective value(J) and gradient(grad)
Inputs
------
theta: model parameters
stim: input data
y_data: output data tuple (mp, fr)
options (dictionary):
pathway: LNK pathway (1 or 2)
is_grad: bool (gradient on or off)
Outputs
-------
J: objective value
grad: gradient of objective
'''
J = LNKS_MP_fobj_helper(LNKS_MP_f, theta, stim, y_data, options)
if options['is_grad']:
grad = _obj.fobj_numel_grad(LNKS_MP_fobj_helper, LNKS_MP_f, theta, stim, y_data, options)
return J, grad
else:
return J