def test_add_range_check(self):
rc = ODM.RangeCheck(Comparator="EQ", SoftHard="Soft")
tt1 = ODM.TranslatedText(_content="invalid test code", lang="en")
tt2 = ODM.TranslatedText(_content="code de test invalide", lang="fr")
rc.CheckValue = [ODM.CheckValue(_content="DIABP")]
rc.FormalExpression = [
ODM.FormalExpression(Context="Python 3.7",
_content="print('hello world')")
]
rc.MeasurementUnitRef = ODM.MeasurementUnitRef(
MeasurementUnitOID="ODM.MU.UNITS")
attrs = {"Comparator": "GT", "SoftHard": "Soft"}
rc1 = ODM.RangeCheck(**attrs)
tt1 = ODM.TranslatedText(_content="invalid test code", lang="en")
rc1.ErrorMessage.TranslatedText = [tt1]
rc1.CheckValue = [ODM.CheckValue(_content="SYSBP")]
rc1.FormalExpression = [
ODM.FormalExpression(Context="Python 3.7",
_content="print('hello world')")
]
rc1.MeasurementUnitRef = ODM.MeasurementUnitRef(
MeasurementUnitOID="ODM.MU.UNITS")
self.item.RangeCheck = [rc, rc1]
self.assertEqual(self.item.RangeCheck[0].Comparator, "EQ")
self.assertEqual(self.item.RangeCheck[1].Comparator, "GT")
def test_add_formal_expression(self):
self.FormalExpression = [
ODM.FormalExpression(Context="Python 3.7",
_content="print('hello world')")
]
self.assertEqual(self.FormalExpression[0]._content,
"print('hello world')")
def test_to_xml(self):
attrs = self.set_item_attributes()
item = ODM.ItemDef(**attrs)
item.Description.TranslatedText = [
ODM.TranslatedText(_content="this is the first test description",
lang="en")
]
item.Question.TranslatedText = [
ODM.TranslatedText(_content="Any AEs?", lang="en")
]
item.ExternalQuestion = ODM.ExternalQuestion(Dictionary="SF36",
Version="12",
Code="Walks 1-mile")
item.CodeListRef = ODM.CodeListRef(
CodeListOID="CL.NY_SUB_Y_N_2011-10-24")
item.RangeCheck = [ODM.RangeCheck(Comparator="EQ", SoftHard="Soft")]
item.RangeCheck[0].CheckValue = [ODM.CheckValue(_content="DIABP")]
item.RangeCheck[0].FormalExpression = [
ODM.FormalExpression(Context="Python 3.7",
_content="print('hello world')")
]
item.RangeCheck[0].MeasurementUnitRef = ODM.MeasurementUnitRef(
MeasurementUnitOID="ODM.MU.UNITS")
item.RangeCheck[0].ErrorMessage.TranslatedText = [
ODM.TranslatedText(_content="invalid test code", lang="en")
]
item_xml = item.to_xml()
self.assertEqual(item_xml.attrib["OID"], "ODM.IT.AE.AEYN")
cv = item_xml.find("*/CheckValue")
self.assertEqual(cv.text, "DIABP")
dt = item_xml.findall("Description/TranslatedText")
self.assertEqual(len(dt), 1)
def test_no_description(self):
tt = ODM.TranslatedText(lang="en", _content="hello, world")
validator = METADATA.MetadataSchema()
results = tt.verify_conformance(validator)
self.methoddef.FormalExpression = [ODM.FormalExpression(Context="Python 3.7", _content="print('hello world')")]
self.assertEqual(self.methoddef.FormalExpression[0]._content, "print('hello world')")
with self.assertRaises(ValueError):
results = self.methoddef.verify_conformance(validator)
def test_to_dict(self):
attrs = self.set_attributes()
method = ODM.MethodDef(**attrs)
desc = ODM.Description()
tt1 = ODM.TranslatedText(_content="Age at Screening Date (Screening Date - Birth date)", lang="en")
desc.TranslatedText = [tt1]
method.Description = desc
fex = ODM.FormalExpression(Context="Python 3.7", _content="print('hello world')")
method.FormalExpression = [fex]
method_dict = method.to_dict()
self.assertEqual(method_dict["OID"], "ODM.MT.AGE")
self.assertDictEqual(method_dict, self.expected_dict())
def test_to_xml(self):
attrs = self.set_attributes()
cd = ODM.ConditionDef(**attrs)
cd.Description = ODM.Description()
cd.Description.TranslatedText = [
ODM.TranslatedText(
_content="Skip the BRTHMO field when BRTHYR length NE 4",
lang="en")
]
cd.FormalExpression = [
ODM.FormalExpression(Context="Python 3.7", _content="BRTHYR != 4")
]
cd_xml = cd.to_xml()
self.assertEqual(cd_xml.attrib["OID"], "ODM.CD.BRTHMO")
fex_xml = cd_xml.find("FormalExpression")
self.assertEqual(fex_xml.attrib["Context"], "Python 3.7")
def test_to_dict(self):
attrs = self.set_attributes()
cd = ODM.ConditionDef(**attrs)
cd.Description = ODM.Description()
cd.Description.TranslatedText = [
ODM.TranslatedText(
_content="Skip the BRTHMO field when BRTHYR length NE 4",
lang="en")
]
cd.FormalExpression = [
ODM.FormalExpression(Context="Python 3.7", _content="BRTHYR != 4")
]
cd_dict = cd.to_dict()
print(cd_dict)
self.assertEqual(cd_dict["OID"], "ODM.CD.BRTHMO")
self.assertDictEqual(cd_dict, self.expected_dict())
def test_ConditionDef(self):
attrs = {"OID": "ODM.CD.BRTHMO", "Name": "Skip BRTHMO when no BRTHYR"}
cd = ODM.ConditionDef(**attrs)
cd.Description = ODM.Description()
cd.Description.TranslatedText = [
ODM.TranslatedText(
_content="Skip the BRTHMO field when BRTHYR length NE 4",
lang="en")
]
cd.FormalExpression = [
ODM.FormalExpression(Context="Python 3.7", _content="BRTHYR != 4")
]
cd_dict = cd.to_dict()
print(cd_dict)
is_valid = self.validator.verify_conformance(cd_dict, "ConditionDef")
self.assertTrue(is_valid)
def test_RangeCheck(self):
rc = ODM.RangeCheck(Comparator="EQ", SoftHard="Soft")
tt1 = ODM.TranslatedText(_content="invalid test code", lang="en")
tt2 = ODM.TranslatedText(_content="code de test invalide", lang="fr")
rc.ErrorMessage.TranslatedText = [tt1, tt2]
rc.CheckValue = [ODM.CheckValue(_content="DIABP")]
rc.FormalExpression = [
ODM.FormalExpression(Context="Python 3.7",
_content="print('hello world')")
]
rc.MeasurementUnitRef = ODM.MeasurementUnitRef(
MeasurementUnitOID="ODM.MU.UNITS")
rc_dict = rc.to_dict()
print(rc_dict)
is_valid = self.validator.verify_conformance(rc_dict, "RangeCheck")
self.assertTrue(is_valid)
def test_set_invalid_description(self):
rc = ODM.RangeCheck(Comparator="EQ", SoftHard="Soft")
tt1 = ODM.TranslatedText(_content="invalid test code", lang="en")
tt2 = ODM.TranslatedText(_content="code de test invalide", lang="fr")
rc.ErrorMessage.TranslatedText.append(tt1)
rc.ErrorMessage.TranslatedText.append(tt2)
rc.CheckValue = [ODM.CheckValue(_content="DIABP")]
rc.FormalExpression = [
ODM.FormalExpression(Context="Python 3.7",
_content="print('hello world')")
]
rc.MeasurementUnitRef = [
ODM.MeasurementUnitRef(MeasurementUnitOID="ODM.MU.UNITS")
]
self.item.RangeCheck = [rc]
# Description requires a Description object, not a RangeCheck object
with self.assertRaises(TypeError):
self.item.Description = rc
def test_MethodDef(self):
attrs = {
"OID": "ODM.MT.AGE",
"Name": "Algorithm to derive AGE",
"Type": "Computation"
}
method = ODM.MethodDef(**attrs)
method.Description = ODM.Description()
method.Description.TranslatedText.append(
ODM.TranslatedText(
_content="Age at Screening Date (Screening Date - Birth date)",
lang="en"))
method.FormalExpression.append(
ODM.FormalExpression(Context="Python 3.7",
_content="print('hello world')"))
is_valid = self.validator.verify_conformance(method.to_dict(),
"MethodDef")
self.assertTrue(is_valid)
def test_add_formal_expression(self):
fex = ODM.FormalExpression(Context="Python 3.7",
_content="BRTHYR != 4")
self.cond_def.FormalExpression = [fex]
self.assertEqual(self.cond_def.FormalExpression[0]._content,
"BRTHYR != 4")