def test_getIntMap(self):
"""Alignment.getIntMap should return correct mapping."""
aln = Alignment({'seq1':'ACGU','seq2':'CGUA','seq3':'CCGU'})
int_keys = {'seq_0':'seq1','seq_1':'seq2','seq_2':'seq3'}
int_map = {'seq_0':'ACGU','seq_1':'CGUA','seq_2':'CCGU'}
im,ik = aln.getIntMap()
self.assertEqual(ik,int_keys)
self.assertEqual(im,int_map)
