def uploadImage(path, gateway):
user = gateway.getLoggedInUser()
ctx = SecurityContext(user.getGroupId())
sessionKey = gateway.getSessionId(user)
config = ImportConfig()
config.email.set("")
config.sendFiles.set('true')
config.sendReport.set('false')
config.contOnError.set('false')
config.debug.set('false')
config.hostname.set(HOST)
config.sessionKey.set(sessionKey)
config.targetClass.set("omero.model.Dataset")
config.targetId.set(datasetId)
loci.common.DebugTools.enableLogging("DEBUG")
store = config.createStore()
reader = OMEROWrapper(config)
library = ImportLibrary(store,reader)
errorHandler = ErrorHandler(config)
library.addObserver(LoggingImportMonitor())
candidates = ImportCandidates (reader, path, errorHandler)
reader.setMetadataOptions(DefaultMetadataOptions(MetadataLevel.ALL))
success = library.importCandidates(config, candidates)
return success
def upload_image(gateway, path, host, dataset_id):
user = gateway.getLoggedInUser()
ctx = SecurityContext(user.getGroupId())
session_key = gateway.getSessionId(user)
str2d = Array.newInstance(String,[1])
str2d[0] = path
config = ImportConfig()
config.email.set("")
config.sendFiles.set('true')
config.sendReport.set('false')
config.contOnError.set('false')
config.debug.set('false')
config.hostname.set(host)
config.sessionKey.set(session_key)
config.targetClass.set("omero.model.Dataset")
config.targetId.set(dataset_id)
loci.common.DebugTools.enableLogging("DEBUG")
store = config.createStore()
reader = OMEROWrapper(config)
library = ImportLibrary(store,reader)
error_handler = ErrorHandler(config)
library.addObserver(LoggingImportMonitor())
candidates = ImportCandidates(reader, str2d, error_handler)
reader.setMetadataOptions(DefaultMetadataOptions(MetadataLevel.ALL))
print('Importing image: ' + str2d[0])
success = library.importCandidates(config, candidates)
return success