def do_import(self, project_name, dataset_name, ext, image_dir, image_num):
image_files = []
p_id = -1
d_id = -1
if os.path.isfile(image_dir): # target = file
image_files.append(image_dir)
elif os.path.isdir(image_dir): # target = dir
search_command = '*' + ext
image_files = glob.glob(os.path.join(image_dir, search_command))
else:
print "Cannot find file or dir:", image_dir
return -1
if len(image_files) != int(image_num):
raise Exception(
"Number of images does not match: %s <> %s in %s" %
(str(len(image_files)), str(int(image_num)), dataset_name))
image_files.sort() # ソート
for image_file in image_files:
if os.path.isfile(image_file):
cli = omero.cli.CLI()
cli.loadplugins()
cli.invoke([
"login", "-s", self.HOST, "-p", self.PORT, "-u", self.USER,
"-w", self.PASSWORD, "-C"
],
strict=True)
cli.invoke(["sessions", "group", self.GROUP], strict=True)
try:
p_id, d_id = self.create_containers(
project_name, dataset_name)
title = os.path.basename(image_file) # OMEROで見えるファイル名
cli.invoke(
["import", "-d",
str(d_id), "-n", title, image_file],
strict=True)
print p_id, d_id
except:
print "Import failed for %s : %s" % (image_file, str(
cli.rv))
cli.close()
return p_id, d_id
def close_remote_connection(c, cli, remote_conn):
remote_conn.close()
c.closeSession()
cli.close()
