def get_managed_repo(self, client):
"""
For the moment this assumes there's only one.
"""
from omero.grid import ManagedRepositoryPrx as MRepo
shared = client.sf.sharedResources()
repos = shared.repositories()
repos = zip(repos.descriptions, repos.proxies)
repos.sort(lambda a, b: cmp(a[0].id.val, b[0].id.val))
for idx, pair in enumerate(repos):
if MRepo.checkedCast(pair[1]):
return pair
def get_managed_repo(self, client):
"""
For the moment this assumes there's only one.
"""
from omero.grid import ManagedRepositoryPrx as MRepo
shared = client.sf.sharedResources()
repos = shared.repositories()
repos = zip(repos.descriptions, repos.proxies)
repos.sort(lambda a, b: cmp(a[0].id.val, b[0].id.val))
for idx, pair in enumerate(repos):
if MRepo.checkedCast(pair[1]):
return pair
def repos(self, args):
"""List all repositories.
These repositories are where OMERO stores all binary data for your
system. Most useful is likely the "ManagedRepository" where OMERO 5
imports to.
Examples:
bin/omero fs repos # Show all
bin/omero fs repos --managed # Show only the managed repo
# Or to print only the directory
# under Unix:
bin/omero fs repos --managed --style=plain | cut -d, -f5
"""
from omero.grid import ManagedRepositoryPrx as MRepo
client = self.ctx.conn(args)
shared = client.sf.sharedResources()
repos = shared.repositories()
repos = zip(repos.descriptions, repos.proxies)
repos.sort(lambda a, b: cmp(a[0].id.val, b[0].id.val))
tb = self._table(args)
tb.cols(["Id", "UUID", "Type", "Path"])
for idx, pair in enumerate(repos):
desc, prx = pair
path = "".join([desc.path.val, desc.name.val])
type = "Public"
is_mrepo = MRepo.checkedCast(prx)
if is_mrepo:
type = "Managed"
if args.managed and not is_mrepo:
continue
if desc.hash.val == "ScriptRepo":
type = "Script"
tb.row(idx, *(desc.id.val, desc.hash.val, type, path))
self.ctx.out(str(tb.build()))
def repos(self, args):
"""List all repositories.
These repositories are where OMERO stores all binary data for your
system. Most useful is likely the "ManagedRepository" where OMERO 5
imports to.
Examples:
bin/omero fs repos # Show all
bin/omero fs repos --managed # Show only the managed repo
# Or to print only the directory
# under Unix:
bin/omero fs repos --managed --style=plain | cut -d, -f5
"""
from omero.grid import ManagedRepositoryPrx as MRepo
client = self.ctx.conn(args)
shared = client.sf.sharedResources()
repos = shared.repositories()
repos = zip(repos.descriptions, repos.proxies)
repos.sort(lambda a, b: cmp(a[0].id.val, b[0].id.val))
tb = self._table(args)
tb.cols(["Id", "UUID", "Type", "Path"])
for idx, pair in enumerate(repos):
desc, prx = pair
path = "".join([desc.path.val, desc.name.val])
type = "Public"
is_mrepo = MRepo.checkedCast(prx)
if is_mrepo:
type = "Managed"
if args.managed and not is_mrepo:
continue
if desc.hash.val == "ScriptRepo":
type = "Script"
tb.row(idx, *(desc.id.val, desc.hash.val, type, path))
self.ctx.out(str(tb.build()))