def to_rtype(self, v):
if isinstance(v, unicode):
v = v.encode('utf-8')
return rtype(v)
def testConversionMethod(self):
assert None == rtype(None)
assert rlong(1) == rtype(rlong(1)) # Returns self
assert rbool(True) == rtype(True)
# Unsupported
# assert rdouble(0) == rtype(Double.valueOf(0))
assert rfloat(0) == rtype(float(0))
assert rlong(0) == rtype(int(0))
assert rint(0) == rtype(int(0))
assert rstring("string") == rtype("string")
# Unsupported
# assert rtime(time) == rtype(new Timestamp(time))
rtype(omero.model.ImageI())
rtype(omero.grid.JobParams())
rtype(set([rlong(1)]))
rtype(list([rlong(2)]))
rtype({})
# Unsupported
# rtype(array)
try:
rtype(())
assert False, "Shouldn't be able to handle this yet"
except omero.ClientError:
pass
def __init__(self,
name,
optional=True,
out=False,
description=None,
default=None,
**kwargs):
# Non-Param attributes
omero.grid.Param.__init__(self)
# Non-Param attributes
self._name = name
self._in = True
self._out = out
# Other values will be filled in by the kwargs
# Mostly leaving these for backwards compatibility
self.description = description
self.optional = optional
# Assign all the kwargs
for k, v in list(kwargs.items()):
if not hasattr(self, k):
TYPE_LOG.warn("Unknown property: %s", k)
setattr(self, k, v)
_DEF = self.__get(self.PROTOTYPE_DEFAULT, False)
_FUN = self.__get(self.PROTOTYPE_FUNCTION)
_MAX = self.__get(self.PROTOTYPE_MAX)
_MIN = self.__get(self.PROTOTYPE_MIN)
_VAL = self.__get(self.PROTOTYPE_VALUES)
# Someone specifically set the prototype, then
# we assume that useDefault should be True
# For whatever reason, inheritance isn't working.
if default is not None:
newfunc = _FUN
newdefault = default
if isinstance(self, List):
if isinstance(default, (list, tuple)):
newdefault = wrap(default).val
elif isinstance(default, omero.RCollection):
newfunc = lambda x: x
elif isinstance(default, omero.RType):
default = [default]
else:
newfunc = lambda x: x
newdefault = rlist([rtype(default)])
self.useDefault = True
self.prototype = newfunc(newdefault)
else:
if not callable(_FUN):
raise ValueError("Bad prototype function: %s" % _FUN)
# To prevent weirdness, if the class default is
# callable, we'll assume its a constructor and
# create a new one to prevent modification.
try:
_def = _DEF()
except TypeError:
_def = _DEF
self.prototype = _FUN(_def)
# The following use wrap to guarantee that an rtype is present
if self.min is not None:
if _MIN is None:
self.min = _FUN(self.min)
else:
self.min = _MIN(self.min)
if self.max is not None:
if _MAX is None:
self.max = _FUN(self.max)
else:
self.max = _MAX(self.max)
if self.values is not None:
if _VAL is None:
self.values = wrap(self.values)
else:
self.values = _VAL(self.values)
# Now if useDefault has been set, either manually, or
# via setting default="..." we check that the default
# value matches a value if present
if self.values is not None and self.values and self.useDefault:
if isinstance(self.prototype, omero.RCollection):
test = unwrap(self.prototype.val[0])
else:
test = unwrap(self.prototype)
values = unwrap(self.values)
if test not in values:
raise ValueError("%s is not in %s" % (test, values))
def run():
'''
'''
client = scripts.client(
'Edit_Object_Attribute.py',
'Edit the attributes of an object',
scripts.String('Data_Type', optional=False, grouping='1',
description='The data type you want to work with.'),
scripts.Long('ID', optional=False, grouping='2',
description='Object ID'),
scripts.String('Attribute', optional=False, grouping='3',
description='Attribute to set'),
scripts.String('Attribute_Type', optional=False, grouping='4',
description='Type of the attribute to set',
values=[
rstring('Bool'), rstring('Double'),
rstring('Float'), rstring('Int'),
rstring('Long'), rstring('Time'),
rstring('String')
], default='String'),
scripts.String('Value', optional=False, grouping='5',
description='Value to set'),
version='0.1',
authors=['Chris Allan'],
institutions=['Glencoe Software Inc.'],
contact='*****@*****.**',
)
try:
script_params = {}
for key in client.getInputKeys():
if client.getInput(key):
script_params[key] = client.getInput(key, unwrap=True)
session = client.getSession()
update_service = session.getUpdateService()
query_service = session.getQueryService()
value = script_params['Value']
if script_params['Attribute_Type'] == 'Bool':
value = rtype(bool(value))
elif script_params['Attribute_Type'] == 'Double':
value = rdouble(float(value))
elif script_params['Attribute_Type'] == 'Float':
value = rtype(float(value))
elif script_params['Attribute_Type'] == 'Int':
value = rtype(int(value))
elif script_params['Attribute_Type'] == 'Long':
value = rtype(long(value))
elif script_params['Attribute_Type'] == 'Time':
value = rtime(long(value))
else:
value = rtype(value)
ctx = {'omero.group': '-1'}
o = query_service.get(
script_params['Data_Type'], script_params['ID'], ctx)
setattr(o, script_params['Attribute'], value)
ctx = None
try:
ctx = {'omero.group': str(o.details.group.id.val)}
except AttributeError:
pass
update_service.saveObject(o, ctx)
client.setOutput('Message', rstring(
'Setting of attribute successful.'))
finally:
client.closeSession()
def __init__(self, name, optional=True, out=False, description=None, default=None, **kwargs):
# Non-Param attributes
omero.grid.Param.__init__(self)
# Non-Param attributes
self._name = name
self._in = True
self._out = out
# Other values will be filled in by the kwargs
# Mostly leaving these for backwards compatibility
self.description = description
self.optional = optional
# Assign all the kwargs
for k, v in kwargs.items():
if not hasattr(self, k):
TYPE_LOG.warn("Unknown property: %s", k)
setattr(self, k, v)
_DEF = self.__get(self.PROTOTYPE_DEFAULT, False)
_FUN = self.__get(self.PROTOTYPE_FUNCTION)
_MAX = self.__get(self.PROTOTYPE_MAX)
_MIN = self.__get(self.PROTOTYPE_MIN)
_VAL = self.__get(self.PROTOTYPE_VALUES)
# Someone specifically set the prototype, then
# we assume that useDefault should be True
# For whatever reason, inheritance isn't working.
if default is not None:
newfunc = _FUN
newdefault = default
if isinstance(self, List):
if isinstance(default, (list, tuple)):
newdefault = wrap(default).val
elif isinstance(default, omero.RCollection):
newfunc = lambda x: x
elif isinstance(default, omero.RType):
default = [default]
else:
newfunc = lambda x: x
newdefault = rlist([rtype(default)])
self.useDefault = True
self.prototype = newfunc(newdefault)
else:
if not callable(_FUN):
raise ValueError("Bad prototype function: %s" % _FUN)
# To prevent weirdness, if the class default is
# callable, we'll assume its a constructor and
# create a new one to prevent modification.
try:
_def = _DEF()
except TypeError:
_def = _DEF
self.prototype = _FUN(_def)
# The following use wrap to guarantee that an rtype is present
if self.min is not None:
if _MIN is None:
self.min = _FUN(self.min)
else:
self.min = _MIN(self.min)
if self.max is not None:
if _MAX is None:
self.max = _FUN(self.max)
else:
self.max = _MAX(self.max)
if self.values is not None:
if _VAL is None:
self.values = wrap(self.values)
else:
self.values = _VAL(self.values)
# Now if useDefault has been set, either manually, or
# via setting default="..." we check that the default
# value matches a value if present
if self.values is not None and self.values and self.useDefault:
if isinstance(self.prototype, omero.RCollection):
test = unwrap(self.prototype.val[0])
else:
test = unwrap(self.prototype)
values = unwrap(self.values)
if test not in values:
raise ValueError("%s is not in %s" % (test, values))
def testConversionMethod(self):
assert None == rtype(None)
assert rlong(1) == rtype(rlong(1)) # Returns self
assert rbool(True) == rtype(True)
# Unsupported
# assert rdouble(0) == rtype(Double.valueOf(0))
assert rfloat(0) == rtype(float(0))
assert rlong(0) == rtype(long(0))
assert rint(0) == rtype(int(0))
assert rstring("string") == rtype("string")
# Unsupported
# assert rtime(time) == rtype(new Timestamp(time))
rtype(omero.model.ImageI())
rtype(omero.grid.JobParams())
rtype(set([rlong(1)]))
rtype(list([rlong(2)]))
rtype({})
# Unsupported
# rtype(array)
try:
rtype(())
assert False, "Shouldn't be able to handle this yet"
except omero.ClientError:
pass
def run():
'''
'''
client = scripts.client(
'Edit_Object_Attribute.py',
'Edit the attributes of an object',
scripts.String('Data_Type',
optional=False,
grouping='1',
description='The data type you want to work with.'),
scripts.Long('ID',
optional=False,
grouping='2',
description='Object ID'),
scripts.String('Attribute',
optional=False,
grouping='3',
description='Attribute to set'),
scripts.String('Attribute_Type',
optional=False,
grouping='4',
description='Type of the attribute to set',
values=[
rstring('Bool'),
rstring('Double'),
rstring('Float'),
rstring('Int'),
rstring('Long'),
rstring('Time'),
rstring('String')
],
default='String'),
scripts.String('Value',
optional=False,
grouping='5',
description='Value to set'),
version='0.1',
authors=['Chris Allan'],
institutions=['Glencoe Software Inc.'],
contact='*****@*****.**',
)
try:
script_params = {}
for key in client.getInputKeys():
if client.getInput(key):
script_params[key] = client.getInput(key, unwrap=True)
session = client.getSession()
update_service = session.getUpdateService()
query_service = session.getQueryService()
value = script_params['Value']
if script_params['Attribute_Type'] == 'Bool':
value = rtype(bool(value))
elif script_params['Attribute_Type'] == 'Double':
value = rdouble(float(value))
elif script_params['Attribute_Type'] == 'Float':
value = rtype(float(value))
elif script_params['Attribute_Type'] == 'Int':
value = rtype(int(value))
elif script_params['Attribute_Type'] == 'Long':
value = rtype(int(value))
elif script_params['Attribute_Type'] == 'Time':
value = rtime(int(value))
else:
value = rtype(value)
ctx = {'omero.group': '-1'}
o = query_service.get(script_params['Data_Type'], script_params['ID'],
ctx)
setattr(o, script_params['Attribute'], value)
ctx = None
try:
ctx = {'omero.group': str(o.details.group.id.val)}
except AttributeError:
pass
update_service.saveObject(o, ctx)
client.setOutput('Message',
rstring('Setting of attribute successful.'))
finally:
client.closeSession()
def run():
"""
"""
client = scripts.client(
"Edit_Object_Attribute.py",
"Edit the attributes of an object",
scripts.String("Data_Type", optional=False, grouping="1", description="The data type you want to work with."),
scripts.Long("ID", optional=False, grouping="2", description="Object ID"),
scripts.String("Attribute", optional=False, grouping="3", description="Attribute to set"),
scripts.String(
"Attribute_Type",
optional=False,
grouping="4",
description="Type of the attribute to set",
values=[
rstring("Bool"),
rstring("Double"),
rstring("Float"),
rstring("Int"),
rstring("Long"),
rstring("Time"),
rstring("String"),
],
default="String",
),
scripts.String("Value", optional=False, grouping="5", description="Value to set"),
version="0.1",
authors=["Chris Allan"],
institutions=["Glencoe Software Inc."],
contact="*****@*****.**",
)
try:
script_params = {}
for key in client.getInputKeys():
if client.getInput(key):
script_params[key] = client.getInput(key, unwrap=True)
session = client.getSession()
update_service = session.getUpdateService()
query_service = session.getQueryService()
value = script_params["Value"]
if script_params["Attribute_Type"] == "Bool":
value = rtype(bool(value))
elif script_params["Attribute_Type"] == "Double":
value = rdouble(float(value))
elif script_params["Attribute_Type"] == "Float":
value = rtype(float(value))
elif script_params["Attribute_Type"] == "Int":
value = rtype(int(value))
elif script_params["Attribute_Type"] == "Long":
value = rtype(long(value))
elif script_params["Attribute_Type"] == "Time":
value = rtime(long(value))
else:
value = rtype(value)
ctx = {"omero.group": "-1"}
o = query_service.get(script_params["Data_Type"], script_params["ID"], ctx)
setattr(o, script_params["Attribute"], value)
ctx = None
try:
ctx = {"omero.group": str(o.details.group.id.val)}
except AttributeError:
pass
update_service.saveObject(o, ctx)
client.setOutput("Message", rstring("Setting of attribute successful."))
finally:
client.closeSession()
def to_rtype(self, v):
if isinstance(v, unicode):
v = v.encode('utf-8')
return rtype(v)