예제 #1
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 def testGetAttrSetAttrDetails(self):
     d = DetailsI()
     self.assert_(None == d.owner)
     d.owner = ExperimenterI()
     self.assert_(d.owner)
     d.owner = None
     self.assert_(None == d.owner)
     d.ice_preMarshal()
예제 #2
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 def testGetAttrSetAttrDetails(self):
     d = DetailsI()
     assert None == d.owner
     d.owner = ExperimenterI()
     assert d.owner
     d.owner = None
     assert None == d.owner
     d.ice_preMarshal()
예제 #3
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    def testGroupOwners(self):
        # this is the test of creating private group and updating it
        # including changes in #1434
        uuid = self.uuid()
        admin = self.root.sf.getAdminService()

        # create group1
        new_gr1 = ExperimenterGroupI()
        new_gr1.name = rstring("group1_%s" % uuid)
        new_gr1.ldap = rbool(False)
        p = PermissionsI()
        p.setUserRead(True)
        p.setUserWrite(True)
        p.setGroupRead(True)
        p.setGroupAnnotate(False)
        p.setGroupWrite(False)
        p.setWorldRead(False)
        p.setWorldAnnotate(False)
        p.setWorldWrite(False)
        new_gr1.details.permissions = p
        g1_id = admin.createGroup(new_gr1)
        gr1 = admin.getGroup(g1_id)

        # create user1
        new_exp1 = ExperimenterI()
        new_exp1.omeName = rstring("user1_%s" % uuid)
        new_exp1.firstName = rstring("New")
        new_exp1.lastName = rstring("Test")
        new_exp1.ldap = rbool(False)
        new_exp1.email = rstring("*****@*****.**")

        uuid = self.uuid()
        uuidGroup = ExperimenterGroupI()
        uuidGroup.name = rstring(uuid)
        uuidGroup.ldap = rbool(False)
        uuidGroupId = admin.createGroup(uuidGroup)
        uuidGroup = ExperimenterGroupI(uuidGroupId, False)
        listOfGroups = list()
        listOfGroups.append(admin.lookupGroup("user"))
        eid1 = admin.createExperimenterWithPassword(new_exp1, rstring("ome"),
                                                    uuidGroup, listOfGroups)
        exp1 = admin.getExperimenter(eid1)

        # set owner of the group (user is not a member of)
        admin.addGroupOwners(gr1, [exp1])
        # chech if is the leader
        leaderOfGroups = admin.getLeaderOfGroupIds(exp1)
        assert gr1.id.val in leaderOfGroups

        # remove group owner
        admin.removeGroupOwners(gr1, [exp1])
        # chech if no longer is the leader
        leaderOfGroups = admin.getLeaderOfGroupIds(exp1)
        assert gr1.id.val not in leaderOfGroups
        """
예제 #4
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    def test1109(self):
        uuid = self.uuid()
        admin = self.root.sf.getAdminService()

        # Replace defaultGroup with something new
        defaultGroup = self.new_group()

        # create data
        #group1
        new_gr1 = ExperimenterGroupI()
        new_gr1.name = rstring("group1_%s" % uuid)
        gid = admin.createGroup(new_gr1)

        #new user1
        new_exp = ExperimenterI()
        new_exp.omeName = rstring("user_%s" % uuid)
        new_exp.firstName = rstring("New")
        new_exp.lastName = rstring("Test")
        new_exp.email = rstring("*****@*****.**")

        listOfGroups = list()
        # defaultGroup = admin.lookupGroup("default") Removed in 4.2
        listOfGroups.append(admin.getGroup(gid))
        listOfGroups.append(admin.lookupGroup("user"))

        eid = admin.createExperimenter(new_exp, defaultGroup, listOfGroups)

        #test
        exp = admin.getExperimenter(eid)
        #print "exp: ", exp.id.val, " his default group is: ", admin.getDefaultGroup(exp.id.val).id.val

        gr1 = admin.getGroup(2)
        indefault = admin.containedExperimenters(gr1.id.val)
        # print "members of group %s %i" % (gr1.name.val, gr1.id.val)
        for m in indefault:
            if m.id.val == exp.id.val:
                self.assert_(m.copyGroupExperimenterMap()[0].parent.id.val ==
                             admin.getDefaultGroup(exp.id.val).id.val)
                # print "exp: id=", m.id.val, "; GEM[0]: ", type(m.copyGroupExperimenterMap()[0].parent), m.copyGroupExperimenterMap()[0].parent.id.val

        gr2 = admin.getGroup(gid)
        members2 = admin.containedExperimenters(gr2.id.val)
        # print "members of group %s %i" % (gr2.name.val, gr2.id.val)
        for m in members2:
            if m.id.val == exp.id.val:
                copied_id = m.copyGroupExperimenterMap()[0].parent.id.val
                got_id = admin.getDefaultGroup(exp.id.val).id.val
                contained = admin.containedGroups(m.id.val)
                self.assertEquals(copied_id, got_id,\
                """
                %s != %s. Groups for experimenter %s = %s (graph) or %s (contained)
                """ % ( copied_id, got_id, exp.id.val, [ x.parent.id.val for x in m.copyGroupExperimenterMap() ], [ y.id.val for y in contained ] ))
예제 #5
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    def testLinkViaLink(self):
        user = ExperimenterI()
        user.setFirstName(rstring("test"))
        user.setLastName(rstring("user"))
        user.setOmeName(rstring("UUID"))

        # possibly setOmeName() and setOmeName(string) ??
        # and then don't need omero/types.h

        group = ExperimenterGroupI()
        # TODOuser.linkExperimenterGroup(group)
        link = GroupExperimenterMapI()
        link.parent = group
        link.child = user
예제 #6
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    def testLinkGroupAndUser(self):
        user = ExperimenterI()
        group = ExperimenterGroupI()
        link = GroupExperimenterMapI()

        link.id = rlong(1)
        link.link(group, user)
        user.addGroupExperimenterMap(link, False)
        group.addGroupExperimenterMap(link, False)

        count = 0
        for i in user.iterateGroupExperimenterMap():
            count += 1

        self.assert_(count == 1)
예제 #7
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    def testThumbs(self):

        # root session is root.sf
        uuid = self.root.sf.getAdminService().getEventContext().sessionUuid
        admin = self.root.sf.getAdminService()

        group1name = "private_%s" % uuid
        group2name = "read-only_%s" % uuid
        group3name = "collaborative_%s" % uuid
        ownerName = "owner_%s" % uuid
        user1name = "user1_%s" % uuid
        user2name = "user2_%s" % uuid

        ### create three users in 3 groups
        listOfGroups = list()
        listOfGroups.append(admin.lookupGroup(
            "user"))  # all users need to be in 'user' group to do anything!

        #group1 - private
        new_gr1 = ExperimenterGroupI()
        new_gr1.name = rstring(group1name)
        p = PermissionsI('rw----')
        new_gr1.details.permissions = p
        gid = admin.createGroup(new_gr1)
        privateGroup = admin.getGroup(gid)
        self.assertEquals('rw----', str(privateGroup.details.permissions))
        listOfGroups.append(privateGroup)

        #group2 - read-only
        new_gr2 = ExperimenterGroupI()
        new_gr2.name = rstring(group2name)
        p2 = PermissionsI('rwr---')
        new_gr2.details.permissions = p2
        gid2 = admin.createGroup(new_gr2)
        readOnlyGroup = admin.getGroup(gid2)
        self.assertEquals('rwr---', str(readOnlyGroup.details.permissions))
        listOfGroups.append(readOnlyGroup)

        #group3 - read-annotate
        new_gr3 = ExperimenterGroupI()
        new_gr3.name = rstring(group3name)
        p = PermissionsI('rwra--')
        new_gr3.details.permissions = p
        gid3 = admin.createGroup(new_gr3)
        collaborativeGroup = admin.getGroup(gid3)
        self.assertEquals('rwra--',
                          str(collaborativeGroup.details.permissions))
        listOfGroups.append(collaborativeGroup)

        #new user (group owner)
        owner = ExperimenterI()
        owner.omeName = rstring(ownerName)
        owner.firstName = rstring("Group")
        owner.lastName = rstring("Owner")
        owner.email = rstring("*****@*****.**")

        ownerId = admin.createExperimenterWithPassword(owner, rstring("ome"),
                                                       privateGroup,
                                                       listOfGroups)
        newOwner = admin.getExperimenter(ownerId)
        admin.setGroupOwner(privateGroup, newOwner)
        admin.setGroupOwner(readOnlyGroup, newOwner)
        admin.setGroupOwner(collaborativeGroup, newOwner)

        #new user1
        new_exp = ExperimenterI()
        new_exp.omeName = rstring(user1name)
        new_exp.firstName = rstring("Will")
        new_exp.lastName = rstring("Moore")
        new_exp.email = rstring("*****@*****.**")

        eid = admin.createExperimenterWithPassword(new_exp, rstring("ome"),
                                                   privateGroup, listOfGroups)

        #new user2
        new_exp2 = ExperimenterI()
        new_exp2.omeName = rstring(user2name)
        new_exp2.firstName = rstring("User")
        new_exp2.lastName = rstring("Test2")
        new_exp2.email = rstring("*****@*****.**")

        eid2 = admin.createExperimenterWithPassword(new_exp2, rstring("ome"),
                                                    privateGroup, listOfGroups)

        ## get users
        user1 = admin.getExperimenter(eid)
        user2 = admin.getExperimenter(eid2)

        ## login as user1 (into their default group)
        client_share1 = self.new_client(user=user1, password="******")

        print len(client_share1.sf.activeServices())

        # create image in private group
        privateImageId = createTestImage(client_share1.sf)
        print len(client_share1.sf.activeServices())

        self.getThumbnail(
            client_share1.sf, privateImageId
        )  # if we don't get thumbnail, test fails when another user does
        print len(client_share1.sf.activeServices())

        # change user into read-only group. Use object Ids for this, NOT objects from a different context
        a = client_share1.sf.getAdminService()
        me = a.getExperimenter(a.getEventContext().userId)
        a.setDefaultGroup(me, omero.model.ExperimenterGroupI(gid2, False))

        self.set_context(client_share1, gid2)
        #print a.getEventContext()

        # create image and get thumbnail (in read-only group)
        readOnlyImageId = createTestImage(client_share1.sf)
        self.getThumbnail(client_share1.sf, readOnlyImageId)

        # change user into collaborative group. Use object Ids for this, NOT objects from a different context
        a.setDefaultGroup(me, omero.model.ExperimenterGroupI(gid3, False))
        self.set_context(client_share1, gid3)

        # create image and get thumbnail (in collaborative group)
        collaborativeImageId = createTestImage(client_share1.sf)
        self.getThumbnail(client_share1.sf, collaborativeImageId)

        # check that we can't get thumbnails for images in other groups
        self.assertEquals(None,
                          self.getThumbnail(client_share1.sf, privateImageId))
        self.assertEquals(None,
                          self.getThumbnail(client_share1.sf, readOnlyImageId))

        # now check that the 'owner' of each group can see all 3 thumbnails.
        ## login as owner (into private group)
        owner_client = self.new_client(user=newOwner, password="******")

        self.getThumbnail(owner_client.sf, privateImageId)
        # check that we can't get thumbnails for images in other groups
        self.assertEquals(None,
                          self.getThumbnail(owner_client.sf, readOnlyImageId))
        self.assertEquals(
            None, self.getThumbnail(owner_client.sf, collaborativeImageId))

        # change owner into read-only group.
        o = client_share1.sf.getAdminService()
        me = o.getExperimenter(o.getEventContext().userId)
        o.setDefaultGroup(me, omero.model.ExperimenterGroupI(gid2, False))
        self.set_context(owner_client, gid2)

        self.getThumbnail(owner_client.sf, readOnlyImageId)
        # check that we can't get thumbnails for images in other groups
        self.assertEquals(None,
                          self.getThumbnail(owner_client.sf, privateImageId))
        self.assertEquals(
            None, self.getThumbnail(owner_client.sf, collaborativeImageId))

        # change owner into collaborative group.
        o.setDefaultGroup(me, omero.model.ExperimenterGroupI(gid3, False))
        self.set_context(owner_client, gid3)

        self.getThumbnail(owner_client.sf, collaborativeImageId)
        # check that we can't get thumbnails for images in other groups
        self.assertEquals(None,
                          self.getThumbnail(owner_client.sf, privateImageId))
        self.assertEquals(None,
                          self.getThumbnail(owner_client.sf, readOnlyImageId))

        # now check that the 'user2' of each group can see all thumbnails except private.
        ## login as user2 (into private group)
        user2_client = self.new_client(user=user2, password="******")

        # check that we can't get thumbnails for any images in private group
        self.assertEquals(None,
                          self.getThumbnail(user2_client.sf, privateImageId))
        self.assertEquals(None,
                          self.getThumbnail(user2_client.sf, readOnlyImageId))
        self.assertEquals(
            None, self.getThumbnail(user2_client.sf, collaborativeImageId))

        # change owner into read-only group.
        u = user2_client.sf.getAdminService()
        me = u.getExperimenter(u.getEventContext().userId)
        u.setDefaultGroup(me, omero.model.ExperimenterGroupI(gid2, False))
        self.set_context(user2_client, gid2)

        self.getThumbnail(user2_client.sf, readOnlyImageId)
        # check that we can't get thumbnails for images in other groups
        self.assertEquals(None,
                          self.getThumbnail(user2_client.sf, privateImageId))
        self.assertEquals(
            None, self.getThumbnail(user2_client.sf, collaborativeImageId))

        # change owner into collaborative group.
        u.setDefaultGroup(me, omero.model.ExperimenterGroupI(gid3, False))
        self.set_context(user2_client, gid3)

        self.getThumbnail(user2_client.sf, collaborativeImageId)
        # check that we can't get thumbnails for images in other groups
        self.assertEquals(None,
                          self.getThumbnail(user2_client.sf, privateImageId))
        self.assertEquals(None,
                          self.getThumbnail(user2_client.sf, readOnlyImageId))
예제 #8
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#!/usr/bin/env python
# -*- coding: utf-8 -*-
from omero_model_EventI import EventI
from omero_model_ExperimenterI import ExperimenterI
from omero_model_GroupExperimenterMapI import GroupExperimenterMapI

assert (not EventI().isMutable())
assert ExperimenterI().isMutable()
assert ExperimenterI().isGlobal()
assert ExperimenterI().isAnnotated()
assert GroupExperimenterMapI().isLink()
예제 #9
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    def testFindAndCountAnnotationsForSharedData(self):
        uuid = self.root.sf.getAdminService().getEventContext().sessionUuid
        query = self.root.sf.getQueryService()
        update = self.root.sf.getUpdateService()
        admin = self.root.sf.getAdminService()
        ipojo = self.root.sf.getContainerService()

        ### create new users
        #group1
        new_gr1 = ExperimenterGroupI()
        new_gr1.name = rstring("group1_%s" % uuid)
        gid = admin.createGroup(new_gr1)

        #new user1
        new_exp = ExperimenterI()
        new_exp.omeName = rstring("user1_%s" % uuid)
        new_exp.firstName = rstring("New")
        new_exp.lastName = rstring("Test")

        defaultGroup = admin.getGroup(gid)
        listOfGroups = list()
        listOfGroups.append(admin.lookupGroup("user"))

        eid = admin.createExperimenterWithPassword(new_exp, rstring("ome"),
                                                   defaultGroup, listOfGroups)

        #new user2
        new_exp2 = ExperimenterI()
        new_exp2.omeName = rstring("user2_%s" % uuid)
        new_exp2.firstName = rstring("New2")
        new_exp2.lastName = rstring("Test2")

        defaultGroup = admin.getGroup(gid)
        listOfGroups = list()
        listOfGroups.append(admin.lookupGroup("user"))

        eid2 = admin.createExperimenterWithPassword(new_exp2, rstring("ome"),
                                                    defaultGroup, listOfGroups)

        ## get users
        user1 = admin.getExperimenter(eid)
        user2 = admin.getExperimenter(eid2)

        ## login as user1
        cl1 = self.new_client(user=user1, password="******")
        update1 = cl1.sf.getUpdateService()
        ipojo1 = cl1.sf.getContainerService()

        # create image
        img = ImageI()
        img.setName(rstring('test1154-img-%s' % (uuid)))
        img.setAcquisitionDate(rtime(0))

        # default permission 'rw----':
        img = update1.saveAndReturnObject(img)
        img.unload()

        ann1 = CommentAnnotationI()
        ann1.textValue = rstring("user comment - %s" % uuid)
        l_ann1 = ImageAnnotationLinkI()
        l_ann1.setParent(img)
        l_ann1.setChild(ann1)
        update1.saveObject(l_ann1)

        #user retrives the annotations for image
        coll_count = ipojo1.getCollectionCount(
            "Image", "ome.model.containers.Image_annotationLinks",
            [img.id.val], None)
        self.assertEquals(1, coll_count.get(img.id.val, []))
        #self.assertEquals(1, len(ipojo1.findAnnotations("Image", [img.id.val], None, None).get(img.id.val, [])))

        ## login as user2
        cl2 = self.new_client(user=user2, password="******")
        update2 = cl1.sf.getUpdateService()

        ann = CommentAnnotationI()
        ann.textValue = rstring("user2 comment - %s" % uuid)
        l_ann = ImageAnnotationLinkI()
        l_ann.setParent(img)
        l_ann.setChild(ann)
        update2.saveObject(l_ann)

        #do they see the same vals?
        #print ipojo1.getCollectionCount("Image", "ome.model.containers.Image_annotationLinks", [img.id.val], None)
        #print ipojo.getCollectionCount("Image", "ome.model.containers.Image_annotationLinks", [img.id.val], None)
        #print len(ipojo1.findAnnotations("Image", [img.id.val], None, None).get(img.id.val, []))
        #print len(ipojo.findAnnotations("Image", [img.id.val], None, None).get(img.id.val, []))
        coll_count = ipojo1.getCollectionCount(
            "Image", "ome.model.containers.Image_annotationLinks",
            [img.id.val], None)
        self.assertEquals(2, coll_count.get(img.id.val, []))
        #anns = ipojo1.findAnnotations("Image", [img.id.val], None, None).get(img.id.val, [])
        #self.assertEquals(2, len(anns))

        #self.assert_(anns[0].details.permissions == 'rw----')
        #self.assert_(anns[1].details.permissions == 'rw----')

        cl1.sf.closeOnDestroy()
        cl2.sf.closeOnDestroy()