def test_marshal_screens_plates(self, screens_plates):
screen_a, screen_b, screen_c, screen_d = screens_plates
expected = list()
perms_css = 'canEdit canAnnotate canLink canDelete isOwned canChgrp'
# The underlying query explicitly orders the Screens list by
# case-insensitive name.
for screen in sorted(screens_plates, cmp_name_insensitive):
expected.append({
'id': screen.id.val,
'name': screen.name.val,
'childCount': 4,
'permsCss': perms_css
})
# The underlying query explicitly orders the Plate list by
# case-insensitive name.
source = screen.linkedPlateList()
source.sort(cmp_name_insensitive)
plates = list()
for plate in source:
plates.append({
'id': plate.id.val,
'name': plate.name.val,
'permsCss': perms_css,
'plateAcquisitions': list(),
'plateAcquisitionCount': 0
})
expected[-1]['plates'] = plates
marshaled = marshal_screens(self.conn, self.conn.getUserId())
assert marshaled == expected
def test_marshal_screens_plates_runs(self, screens_plates_runs):
perms_css = 'canEdit canAnnotate canLink canDelete isOwned canChgrp'
expected = []
# The underlying query explicitly orders the Screens by name.
for screen in sorted(screens_plates_runs, cmp_name):
expected_screen = {
'id': screen.id.val,
'name': screen.name.val,
'permsCss': perms_css,
'childCount': 2,
'plates': list()
}
# The underlying query explicitly orders the Plates by name.
for plate in sorted(screen.linkedPlateList(), cmp_name):
expected_plates = expected_screen['plates']
expected_plates.append({
'id': plate.id.val,
'name': plate.name.val,
'plateAcquisitions': list(),
'plateAcquisitionCount': 2,
'permsCss': perms_css
})
# The underlying query explicitly orders the PlateAcquisitions
# by id.
plate_acquisitions = \
sorted(plate.copyPlateAcquisitions(), cmp_id)
for plate_acquisition in plate_acquisitions:
expected_plates[-1]['plateAcquisitions'].append({
'id': plate_acquisition.id.val,
'name': 'Run %d' % plate_acquisition.id.val,
'permsCss': perms_css
})
expected.append(expected_screen)
marshaled = marshal_screens(self.conn, self.conn.getUserId())
assert marshaled == expected
def test_marshal_screens(self, screens):
screen_a, screen_b, screen_c, screen_d = screens
perms_css = 'canEdit canAnnotate canLink canDelete isOwned canChgrp'
# Order is important to test desired HQL sorting semantics.
expected = [{
'id': screen_a.id.val,
'name': 'Apple',
'plates': list(),
'childCount': 0,
'permsCss': perms_css
}, {
'id': screen_c.id.val,
'name': 'atom',
'plates': list(),
'childCount': 0,
'permsCss': perms_css
}, {
'id': screen_b.id.val,
'name': 'bat',
'plates': list(),
'childCount': 0,
'permsCss': perms_css
}, {
'id': screen_d.id.val,
'name': 'Butter',
'plates': list(),
'childCount': 0,
'permsCss': perms_css
}]
marshaled = marshal_screens(self.conn, self.conn.getUserId())
assert marshaled == expected
def test_marshal_screens_plates(self, conn, screens_plates):
screen_a, screen_b, screen_c, screen_d = screens_plates
expected = list()
perms_css = 'canEdit canAnnotate canLink canDelete canChgrp'
# The underlying query explicitly orders the Screens list by
# case-insensitive name.
for screen in sorted(screens_plates, cmp_name_insensitive):
expected.append({
'id': screen.id.val,
'isOwned': True,
'name': screen.name.val,
'childCount': 4,
'permsCss': perms_css
})
# The underlying query explicitly orders the Plate list by
# case-insensitive name.
source = screen.linkedPlateList()
source.sort(cmp_name_insensitive)
plates = list()
for plate in source:
plates.append({
'id': plate.id.val,
'isOwned': True,
'name': plate.name.val,
'permsCss': perms_css,
'plateAcquisitions': list(),
'plateAcquisitionCount': 0
})
expected[-1]['plates'] = plates
marshaled = marshal_screens(conn, conn.getUserId())
assert marshaled == expected
def test_marshal_screen_plate_run(self, screen_plate_run):
screen_id = screen_plate_run.id.val
plate, = screen_plate_run.linkedPlateList()
plate_acquisition, = plate.copyPlateAcquisitions()
perms_css = 'canEdit canAnnotate canLink canDelete isOwned canChgrp'
expected = [{
'id': screen_id,
'childCount': 1,
'name': screen_plate_run.name.val,
'permsCss': perms_css,
'plates': [{
'id': plate.id.val,
'name': plate.name.val,
'plateAcquisitions': [{
'id': plate_acquisition.id.val,
'name': 'Run %d' % plate_acquisition.id.val,
'permsCss': perms_css
}],
'plateAcquisitionCount': 1,
'permsCss': perms_css
}],
}]
marshaled = marshal_screens(self.conn, self.conn.getUserId())
assert marshaled == expected
def test_marshal_screen_plate(self, conn, screen_plate):
plate, = screen_plate.linkedPlateList()
perms_css = 'canEdit canAnnotate canLink canDelete canChgrp'
expected = [{
'id':
screen_plate.id.val,
'name':
screen_plate.name.val,
'isOwned':
True,
'permsCss':
perms_css,
'childCount':
1,
'plates': [{
'id': plate.id.val,
'isOwned': True,
'name': plate.name.val,
'plateAcquisitions': list(),
'plateAcquisitionCount': 0,
'permsCss': perms_css
}],
}]
marshaled = marshal_screens(conn, conn.getUserId())
assert marshaled == expected
def test_marshal_screens_different_users_as_other_user(
self, screens_different_users):
screen_a, screen_b = screens_different_users
expected = list()
perms_css = ''
# The underlying query explicitly orders the Screens list by
# case-insensitive name.
for screen in sorted(screens_different_users, cmp_name_insensitive):
expected.append({
'id': screen.id.val,
'name': screen.name.val,
'childCount': 0,
'permsCss': perms_css,
'plates': list()
})
self.conn.SERVICE_OPTS.setOmeroGroup(screen_a.details.group.id.val)
marshaled = marshal_screens(self.conn, None)
assert marshaled == expected
def test_marshal_screens_plates_runs(self, conn, screens_plates_runs):
perms_css = 'canEdit canAnnotate canLink canDelete canChgrp'
expected = []
# The underlying query explicitly orders the Screens by name.
for screen in sorted(screens_plates_runs, cmp_name):
expected_screen = {
'id': screen.id.val,
'name': screen.name.val,
'isOwned': True,
'permsCss': perms_css,
'childCount': 2,
'plates': list()
}
# The underlying query explicitly orders the Plates by name.
for plate in sorted(screen.linkedPlateList(), cmp_name):
expected_plates = expected_screen['plates']
expected_plates.append({
'id': plate.id.val,
'isOwned': True,
'name': plate.name.val,
'plateAcquisitions': list(),
'plateAcquisitionCount': 2,
'permsCss': perms_css
})
# The underlying query explicitly orders the PlateAcquisitions
# by id.
plate_acquisitions = \
sorted(plate.copyPlateAcquisitions(), cmp_id)
for plate_acquisition in plate_acquisitions:
expected_plates[-1]['plateAcquisitions'].append({
'id':
plate_acquisition.id.val,
'name':
'Run %d' % plate_acquisition.id.val,
'isOwned':
True,
'permsCss':
perms_css
})
expected.append(expected_screen)
marshaled = marshal_screens(conn, conn.getUserId())
assert marshaled == expected
def test_marshal_screens_different_users_as_other_user(
self, conn, screens_different_users):
screen_a, screen_b = screens_different_users
expected = list()
perms_css = ''
# The underlying query explicitly orders the Screens list by
# case-insensitive name.
for screen in sorted(screens_different_users, cmp_name_insensitive):
expected.append({
'id': screen.id.val,
'isOwned': False,
'name': screen.name.val,
'childCount': 0,
'permsCss': perms_css,
'plates': list()
})
conn.SERVICE_OPTS.setOmeroGroup(screen_a.details.group.id.val)
marshaled = marshal_screens(conn, None)
assert marshaled == expected
def test_marshal_screen_plate(self, screen_plate):
plate, = screen_plate.linkedPlateList()
perms_css = 'canEdit canAnnotate canLink canDelete isOwned canChgrp'
expected = [
{
'id': screen_plate.id.val,
'name': screen_plate.name.val,
'permsCss': perms_css,
'childCount': 1,
'plates': [{
'id': plate.id.val,
'name': plate.name.val,
'plateAcquisitions': list(),
'plateAcquisitionCount': 0,
'permsCss': perms_css
}],
}
]
marshaled = marshal_screens(self.conn, self.conn.getUserId())
assert marshaled == expected
def test_marshal_screen_plate_run(self, conn, screen_plate_run):
screen_id = screen_plate_run.id.val
plate, = screen_plate_run.linkedPlateList()
plate_acquisition, = plate.copyPlateAcquisitions()
perms_css = 'canEdit canAnnotate canLink canDelete canChgrp'
expected = [{
'id':
screen_id,
'childCount':
1,
'isOwned':
True,
'name':
screen_plate_run.name.val,
'permsCss':
perms_css,
'plates': [{
'id':
plate.id.val,
'isOwned':
True,
'name':
plate.name.val,
'plateAcquisitions': [{
'id': plate_acquisition.id.val,
'name': 'Run %d' % plate_acquisition.id.val,
'isOwned': True,
'permsCss': perms_css
}],
'plateAcquisitionCount':
1,
'permsCss':
perms_css
}],
}]
marshaled = marshal_screens(conn, conn.getUserId())
assert marshaled == expected
def test_marshal_screens(self, conn, screens):
screen_a, screen_b, screen_c, screen_d = screens
perms_css = 'canEdit canAnnotate canLink canDelete canChgrp'
# Order is important to test desired HQL sorting semantics.
expected = [{
'id': screen_a.id.val,
'isOwned': True,
'name': 'Apple',
'plates': list(),
'childCount': 0,
'permsCss': perms_css
}, {
'id': screen_c.id.val,
'isOwned': True,
'name': 'atom',
'plates': list(),
'childCount': 0,
'permsCss': perms_css
}, {
'id': screen_b.id.val,
'isOwned': True,
'name': 'bat',
'plates': list(),
'childCount': 0,
'permsCss': perms_css
}, {
'id': screen_d.id.val,
'isOwned': True,
'name': 'Butter',
'plates': list(),
'childCount': 0,
'permsCss': perms_css
}]
marshaled = marshal_screens(conn, conn.getUserId())
assert marshaled == expected
def test_marshal_screens_no_results(self):
assert marshal_screens(self.conn, -1L) == []