def install_neuroconstruct():
try:
install_root = os.environ['HOME']
with working_dir(install_root):
print(co(['git', 'clone', 'https://github.com/NeuralEnsemble/neuroConstruct.git']))
path = os.path.join(install_root,'neuroConstruct')
with working_dir(path):
print(co(['./updatenC.sh']))
print(co(['./nC.sh', '-make']))
m = 'Successfully installed neuroConstruct...'
except Exception as e:
m = 'ERROR installing neuroConstruct: ' + str(e)
finally:
inform(m)
def is_installed(version):
inform('Checking whether neuroConstruct is installed', indent=2)
ret = True
try:
with working_dir(PyneuroConstructEngine.get_nC_environment()['NC_HOME']):
print(co(['./nC.sh','-v']))
except Exception as err:
inform("Couldn't execute neuroConstruct:", err, indent=1)
ret = False
return ret
def is_installed(version):
nChome = PyneuroConstructEngine.get_nC_environment()['NC_HOME']
inform('Checking whether neuroConstruct is installed (in %s)'%nChome, indent=2, verbosity=2)
ret = True
try:
with working_dir(nChome):
r = co(['./nC.sh','-v'], verbosity=1)
ret = 'v%s'%r.split('neuroConstruct, version: ')[-1].split()[0]
except Exception as err:
inform("Couldn't execute neuroConstruct:", err, indent=1)
ret = False
return ret
def is_installed(version):
inform('Checking whether neuroConstruct is installed', indent=2, verbosity=2)
ret = True
try:
with working_dir(PyneuroConstructEngine.get_nC_environment()['NC_HOME']):
r = co(['./nC.sh','-v'], verbosity=1)
ret = 'v%s'%r.split()[-1]
except Exception as err:
inform("Couldn't execute neuroConstruct:", err, indent=1)
ret = False
return ret
def run(self):
try:
inform("Running file %s with Py_neuroConstruct" % trim_path(self.modelpath), indent=1)
nC_sh = os.path.join(PyneuroConstructEngine.get_nC_environment()['NC_HOME'], 'nC.sh')
self.stdout = co([nC_sh, '-python', self.modelpath, '-nogui'],
cwd=os.path.dirname(self.modelpath))
self.returncode = 0
except Exception as err:
inform("Error with running Py_neuroConstruct:", err, indent=1)
self.returncode = -1
self.stdout = "???"
def run(self):
try:
inform("Running file %s with Py_neuroConstruct" % trim_path(self.modelpath), indent=1)
nC_sh = os.path.join(PyneuroConstructEngine.get_nC_environment()['NC_HOME'], 'nC.sh')
self.stdout = co([nC_sh, '-python', self.modelpath, '-nogui'],
cwd=os.path.dirname(self.modelpath))
self.returncode = 0
except Exception as err:
inform("Error with running Py_neuroConstruct:", err, indent=1)
self.returncode = -1
self.stdout = "???"
def install_neuroconstruct():
try:
install_root = os.environ['HOME']
with working_dir(install_root):
print(
co([
'git', 'clone',
'https://github.com/NeuralEnsemble/neuroConstruct.git'
]))
path = os.path.join(install_root, 'neuroConstruct')
with working_dir(path):
print(co(['./updatenC.sh']))
print(co(['./nC.sh', '-make']))
m = 'Successfully installed neuroConstruct...'
except Exception as e:
m = 'ERROR installing neuroConstruct: ' + str(e)
finally:
inform(m)
def run(self):
try:
inform("Running file %s with %s" %
(trim_path(self.modelpath), self.name),
indent=1)
self.stdout = co([
'pynml' if os.name != 'nt' else 'pynml.bat', self.modelpath,
'-nogui'
],
cwd=os.path.dirname(self.modelpath))
self.returncode = 0
except sp.CalledProcessError as err:
self.returncode = err.returncode
self.stdout = err.output
raise EngineExecutionError