Python GoRule02 예제들

예제 #1

파일: test_qc.py 프로젝트: deepakunni3/ontobio

def test_go_rule02():

    assoc = make_annotation(qualifier="NOT", goid="GO:0005515").associations[0]

    test_result = qc.GoRule02().test(assoc, all_rules_config())
    assert test_result.result_type == qc.ResultType.WARNING

    assoc.negated = False
    test_result = qc.GoRule02().test(assoc, all_rules_config())
    assert test_result.result_type == qc.ResultType.PASS

    assoc.negated = True
    assoc.object.id = Curie.from_str("GO:0003674")
    test_result = qc.GoRule02().test(assoc, all_rules_config())
    assert test_result.result_type == qc.ResultType.PASS

예제 #2

파일: test_qc.py 프로젝트: geneontology/ontobio

def test_go_rule02():
    a = ["blah"] * 16
    a[3] = "NOT"
    a[4] = "GO:0005515"

    test_result = qc.GoRule02().test(a, assocparser.AssocParserConfig())
    assert test_result.result_type == qc.ResultType.WARNING

    a[3] = ""
    test_result = qc.GoRule02().test(a, assocparser.AssocParserConfig())
    assert test_result.result_type == qc.ResultType.PASS

    a[3] = "NOT"
    a[4] = "GO:0003674"
    test_result = qc.GoRule02().test(a, assocparser.AssocParserConfig())
    assert test_result.result_type == qc.ResultType.PASS

예제 #3

파일: test_qc.py 프로젝트: robertdigital/ontobio

def test_go_rule02():
    a = ["blah"] * 15
    a[3] = "NOT"
    a[4] = "GO:0005515"
    a[8] = "F"
    assoc = gafparser.to_association(a).associations[0]

    test_result = qc.GoRule02().test(assoc, assocparser.AssocParserConfig())
    assert test_result.result_type == qc.ResultType.WARNING

    assoc.negated = False
    test_result = qc.GoRule02().test(assoc, assocparser.AssocParserConfig())
    assert test_result.result_type == qc.ResultType.PASS

    assoc.negated = True
    assoc.object.id = "GO:0003674"
    test_result = qc.GoRule02().test(assoc, assocparser.AssocParserConfig())
    assert test_result.result_type == qc.ResultType.PASS