Python GoRule26 예제들

예제 #1

파일: test_qc.py 프로젝트: deepakunni3/ontobio

def test_go_rule26():

    config = assocparser.AssocParserConfig(ontology=ontology,
                                           paint=True,
                                           rule_set=assocparser.RuleSet.ALL)
    assoc = make_annotation(goid="GO:1234567", evidence="IBA").associations[0]
    # Pass due to IBA in paint
    test_result = qc.GoRule26().test(assoc, config)
    assert test_result.result_type == qc.ResultType.PASS

    config = assocparser.AssocParserConfig(ontology=ontology,
                                           paint=False,
                                           rule_set=assocparser.RuleSet.ALL)
    assoc = make_annotation(goid="GO:1234567", evidence="IPI").associations[0]
    # Pass due to non IBA
    test_result = qc.GoRule26().test(assoc, config)
    assert test_result.result_type == qc.ResultType.PASS

    config = assocparser.AssocParserConfig(ontology=ontology,
                                           paint=False,
                                           rule_set=assocparser.RuleSet.ALL)
    assoc = make_annotation(goid="GO:1234567", evidence="IBA").associations[0]
    # Fail  due to non paint
    test_result = qc.GoRule26().test(assoc, config)
    assert test_result.result_type == qc.ResultType.ERROR

예제 #2

파일: test_qc.py 프로젝트: robertdigital/ontobio

def test_go_rule26():

    config = assocparser.AssocParserConfig(ontology=ontology, paint=True)
    a = make_annotation("GO:BLAHBLAH", "IBA")
    a[8] = "P"
    a[3] = ""
    assoc = gafparser.to_association(a).associations[0]
    # Pass due to IBA in paint
    test_result = qc.GoRule26().test(assoc, config)
    assert test_result.result_type == qc.ResultType.PASS

    config = assocparser.AssocParserConfig(ontology=ontology, paint=False)
    a = make_annotation("GO:BLAHBLAH", "IPI")
    a[8] = "P"
    a[3] = ""
    assoc = gafparser.to_association(a).associations[0]
    # Pass due to non IBA
    test_result = qc.GoRule26().test(assoc, config)
    assert test_result.result_type == qc.ResultType.PASS

    config = assocparser.AssocParserConfig(ontology=ontology, paint=False)
    a = make_annotation("GO:BLAHBLAH", "IBA")
    a[8] = "P"
    a[3] = ""
    assoc = gafparser.to_association(a).associations[0]
    # Pass due to non IBA
    test_result = qc.GoRule26().test(assoc, config)
    assert test_result.result_type == qc.ResultType.ERROR

예제 #3

파일: test_qc.py 프로젝트: lpalbou/ontobio

def test_go_rule26():

    config = assocparser.AssocParserConfig(ontology=ontology, paint=True)
    a = make_annotation("GO:BLAHBLAH", "IBA")
    # Pass due to IBA in paint
    test_result = qc.GoRule26().test(a, config)
    assert test_result.result_type == qc.ResultType.PASS

    config = assocparser.AssocParserConfig(ontology=ontology, paint=False)
    a = make_annotation("GO:BLAHBLAH", "ANY")
    # Pass due to non IBA
    test_result = qc.GoRule26().test(a, config)
    assert test_result.result_type == qc.ResultType.PASS

    config = assocparser.AssocParserConfig(ontology=ontology, paint=False)
    a = make_annotation("GO:BLAHBLAH", "IBA")
    # Pass due to non IBA
    test_result = qc.GoRule26().test(a, config)
    assert test_result.result_type == qc.ResultType.ERROR