def test_reverse_cumulative(self):
histo = Histogram(n_bins=5)
histo.histogram(self.data)
rev_cumulative = histo.reverse_cumulative(maximum=None)
assert_items_almost_equal(list(rev_cumulative.values()),
[10, 5, 5, 3, 2, 1])
rev_cumulative = histo.reverse_cumulative(maximum=1.0)
assert_items_almost_equal(list(rev_cumulative.values()),
[1.0, 0.5, 0.5, 0.3, 0.2, 0.1])
def test_compare_parameters(self):
assert self.hist_nbins.compare_parameters(None) is False
assert (self.hist_nbins_range.compare_parameters(
self.hist_binwidth_range) is True)
assert (self.hist_binwidth_range.compare_parameters(
self.hist_nbins_range) is True)
histo = Histogram(n_bins=5)
assert self.hist_nbins_range.compare_parameters(histo) is False
histo.histogram(self.data)
assert self.hist_nbins_range.compare_parameters(histo) is False
assert (self.hist_nbins_range.compare_parameters(self.hist_nbins) is
False)
assert histo.compare_parameters(self.hist_nbins) is False
assert self.hist_nbins.compare_parameters(histo) is False
def test_normalized(self):
histo = Histogram(n_bins=5)
_ = histo.histogram(self.data)
assert (list(histo.normalized().values()) ==
[1.0, 0.0, 0.4, 0.2, 0.2, 0.2])
assert (list(histo.normalized(raw_probability=True).values()) ==
[0.5, 0.0, 0.2, 0.1, 0.1, 0.1])
def test_cumulative(self):
histo = Histogram(n_bins=5)
_ = histo.histogram(self.data)
cumulative = list(histo.cumulative(None).values())
assert_items_almost_equal(cumulative, [5.0, 5.0, 7.0, 8.0, 9.0, 10.0])
assert_items_almost_equal(histo.cumulative(maximum=1.0),
[0.5, 0.5, 0.7, 0.8, 0.9, 1.0])
def test_cumulative(self):
histo = Histogram(n_bins=5)
hist = histo.histogram(self.data)
cumulative = list(histo.cumulative(None).values())
assert_items_almost_equal(cumulative, [5.0, 5.0, 7.0, 8.0, 9.0, 10.0])
assert_items_almost_equal(histo.cumulative(maximum=1.0),
[0.5, 0.5, 0.7, 0.8, 0.9, 1.0])
def test_normalized(self):
histo = Histogram(n_bins=5)
hist = histo.histogram(self.data)
assert_items_equal(list(histo.normalized().values()),
[1.0, 0.0, 0.4, 0.2, 0.2, 0.2])
assert_items_equal(list(histo.normalized(raw_probability=True).values()),
[0.5, 0.0, 0.2, 0.1, 0.1, 0.1])
def test_compare_parameters(self):
assert_equal(self.hist_nbins.compare_parameters(None), False)
assert_equal(
self.hist_nbins_range.compare_parameters(self.hist_binwidth_range),
True)
assert_equal(
self.hist_binwidth_range.compare_parameters(self.hist_nbins_range),
True)
histo = Histogram(n_bins=5)
assert_equal(self.hist_nbins_range.compare_parameters(histo), False)
histo.histogram(self.data)
assert_equal(self.hist_nbins_range.compare_parameters(histo), False)
assert_equal(self.hist_nbins_range.compare_parameters(self.hist_nbins),
False)
assert_equal(histo.compare_parameters(self.hist_nbins), False)
assert_equal(self.hist_nbins.compare_parameters(histo), False)
def test_xvals(self):
histo = Histogram(n_bins=5)
_ = histo.histogram(self.data) # need this to set the bins
assert histo.left_bin_edges == self.left_bin_edges
assert histo.bin_widths == self.bin_widths
assert all(histo.xvals("l") == [1.0, 1.5, 2.0, 2.5, 3.0, 3.5])
assert all(histo.xvals("r") == [1.5, 2.0, 2.5, 3.0, 3.5, 4.0])
assert all(histo.xvals("m") == [1.25, 1.75, 2.25, 2.75, 3.25, 3.75])
def test_normalized(self):
histo = Histogram(n_bins=5)
hist = histo.histogram(self.data)
assert_items_equal(histo.normalized().values(),
[1.0, 0.0, 0.4, 0.2, 0.2, 0.2])
assert_items_equal(
histo.normalized(raw_probability=True).values(),
[0.5, 0.0, 0.2, 0.1, 0.1, 0.1])
def test_xvals(self):
histo = Histogram(n_bins=5)
hist = histo.histogram(self.data) # need this to set the bins
assert_equal(histo.left_bin_edges, self.left_bin_edges)
assert_equal(histo.bin_widths, self.bin_widths)
assert_items_equal(histo.xvals("l"), [1.0, 1.5, 2.0, 2.5, 3.0, 3.5])
assert_items_equal(histo.xvals("r"), [1.5, 2.0, 2.5, 3.0, 3.5, 4.0])
assert_items_equal(histo.xvals("m"),
[1.25, 1.75, 2.25, 2.75, 3.25, 3.75])
def test_reverse_cumulative(self):
histo = Histogram(n_bins=5)
hist = histo.histogram(self.data)
rev_cumulative = histo.reverse_cumulative(maximum=None)
assert_items_almost_equal(list(rev_cumulative.values()),
[10, 5, 5, 3, 2, 1])
rev_cumulative = histo.reverse_cumulative(maximum=1.0)
assert_items_almost_equal(list(rev_cumulative.values()),
[1.0, 0.5, 0.5, 0.3, 0.2, 0.1])
def test_xvals(self):
histo = Histogram(n_bins=5)
hist = histo.histogram(self.data) # need this to set the bins
assert_equal(histo.left_bin_edges, self.left_bin_edges)
assert_equal(histo.bin_widths, self.bin_widths)
assert_items_equal(histo.xvals("l"), [1.0, 1.5, 2.0, 2.5, 3.0, 3.5])
assert_items_equal(histo.xvals("r"), [1.5, 2.0, 2.5, 3.0, 3.5, 4.0])
assert_items_equal(histo.xvals("m"),
[1.25, 1.75, 2.25, 2.75, 3.25, 3.75])
def test_compare_parameters(self):
assert_equal(self.hist_nbins.compare_parameters(None), False)
assert_equal(
self.hist_nbins_range.compare_parameters(self.hist_binwidth_range),
True
)
assert_equal(
self.hist_binwidth_range.compare_parameters(self.hist_nbins_range),
True
)
histo = Histogram(n_bins=5)
assert_equal(self.hist_nbins_range.compare_parameters(histo), False)
histo.histogram(self.data)
assert_equal(self.hist_nbins_range.compare_parameters(histo), False)
assert_equal(
self.hist_nbins_range.compare_parameters(self.hist_nbins),
False
)
assert_equal(histo.compare_parameters(self.hist_nbins), False)
assert_equal(self.hist_nbins.compare_parameters(histo), False)
def test_left_bin_error(self):
histo = Histogram(bin_width=0.5, bin_range=(-1.0, 3.5))
histo.histogram([3.5])
assert histo.reverse_cumulative() != 0
class TestHistogram(object):
def setup(self):
self.data = [1.0, 1.1, 1.2, 1.3, 2.0, 1.4, 2.3, 2.5, 3.1, 3.5]
self.nbins = 5
hist_counts = [5, 0, 2, 1, 1, 1]
self.bins = [1.0, 1.5, 2.0, 2.5, 3.0, 3.5]
self.left_bin_edges = (1.0,)
self.bin_widths = (0.5,)
self.hist = collections.Counter({(0,): 5, (2,): 2, (3,): 1,
(4,): 1, (5,): 1})
self.default_hist = Histogram()
self.hist_nbins = Histogram(n_bins=5)
self.hist_nbins_binwidth = Histogram(n_bins=5, bin_width=1.0)
self.hist_nbins_range = Histogram(n_bins=5, bin_range=(1.0, 3.5))
self.hist_binwidth_range = Histogram(bin_width=0.5, bin_range=(1.0, 3.5))
def test_initialization(self):
assert_equal(self.default_hist.bins, 20)
assert_equal(self.hist_nbins.bins, 5)
assert_equal(self.hist_nbins.bin_width, None)
assert_equal(self.hist_nbins_binwidth.bins, 5)
assert_equal(self.hist_nbins_binwidth.bin_width, None)
assert_items_equal(self.hist_nbins_range.bins, self.bins)
assert_items_equal(self.hist_binwidth_range.bins, self.bins)
def test_build_from_data(self):
hist = self.hist_nbins.histogram(self.data)
assert_equal(self.hist_nbins.count, 10)
assert_items_equal(hist, self.hist)
hist2 = self.hist_binwidth_range.histogram(self.data)
assert_equal(self.hist_binwidth_range.count, 10)
assert_items_equal(hist2, self.hist)
@raises(RuntimeError)
def test_build_from_data_fail(self):
histo = Histogram(n_bins=5)
histo.histogram()
def test_add_data_to_histogram(self):
histogram = Histogram(n_bins=5, bin_range=(1.0, 3.5))
hist = histogram.add_data_to_histogram(self.data)
assert_equal(histogram.count, 10)
assert_items_equal(hist, self.hist)
hist2 = histogram.add_data_to_histogram(self.data)
assert_items_equal(hist2, hist+hist)
assert_equal(histogram.count, 20)
def test_compare_parameters(self):
assert_equal(self.hist_nbins.compare_parameters(None), False)
assert_equal(
self.hist_nbins_range.compare_parameters(self.hist_binwidth_range),
True
)
assert_equal(
self.hist_binwidth_range.compare_parameters(self.hist_nbins_range),
True
)
histo = Histogram(n_bins=5)
assert_equal(self.hist_nbins_range.compare_parameters(histo), False)
histo.histogram(self.data)
assert_equal(self.hist_nbins_range.compare_parameters(histo), False)
assert_equal(
self.hist_nbins_range.compare_parameters(self.hist_nbins),
False
)
assert_equal(histo.compare_parameters(self.hist_nbins), False)
assert_equal(self.hist_nbins.compare_parameters(histo), False)
def test_xvals(self):
histo = Histogram(n_bins=5)
hist = histo.histogram(self.data) # need this to set the bins
assert_equal(histo.left_bin_edges, self.left_bin_edges)
assert_equal(histo.bin_widths, self.bin_widths)
assert_items_equal(histo.xvals("l"), [1.0, 1.5, 2.0, 2.5, 3.0, 3.5])
assert_items_equal(histo.xvals("r"), [1.5, 2.0, 2.5, 3.0, 3.5, 4.0])
assert_items_equal(histo.xvals("m"),
[1.25, 1.75, 2.25, 2.75, 3.25, 3.75])
def test_normalization(self):
histo = Histogram(n_bins=5)
hist = histo.histogram(self.data)
assert_equal(histo._normalization(), 5.0)
def test_normalized(self):
histo = Histogram(n_bins=5)
hist = histo.histogram(self.data)
assert_items_equal(list(histo.normalized().values()),
[1.0, 0.0, 0.4, 0.2, 0.2, 0.2])
assert_items_equal(list(histo.normalized(raw_probability=True).values()),
[0.5, 0.0, 0.2, 0.1, 0.1, 0.1])
def test_cumulative(self):
histo = Histogram(n_bins=5)
hist = histo.histogram(self.data)
cumulative = list(histo.cumulative(None).values())
assert_items_almost_equal(cumulative, [5.0, 5.0, 7.0, 8.0, 9.0, 10.0])
assert_items_almost_equal(histo.cumulative(maximum=1.0),
[0.5, 0.5, 0.7, 0.8, 0.9, 1.0])
def test_reverse_cumulative(self):
histo = Histogram(n_bins=5)
hist = histo.histogram(self.data)
rev_cumulative = histo.reverse_cumulative(maximum=None)
assert_items_almost_equal(list(rev_cumulative.values()),
[10, 5, 5, 3, 2, 1])
rev_cumulative = histo.reverse_cumulative(maximum=1.0)
assert_items_almost_equal(list(rev_cumulative.values()),
[1.0, 0.5, 0.5, 0.3, 0.2, 0.1])
def test_build_from_data_fail(self):
histo = Histogram(n_bins=5)
histo.histogram()
def test_normalization(self):
histo = Histogram(n_bins=5)
_ = histo.histogram(self.data)
assert histo._normalization() == 5.0
def test_normalization(self):
histo = Histogram(n_bins=5)
hist = histo.histogram(self.data)
assert_equal(histo._normalization(), 5.0)
class TestHistogram(object):
def setup(self):
self.data = [1.0, 1.1, 1.2, 1.3, 2.0, 1.4, 2.3, 2.5, 3.1, 3.5]
self.nbins = 5
self.bins = [1.0, 1.5, 2.0, 2.5, 3.0, 3.5]
self.left_bin_edges = (1.0,)
self.bin_widths = (0.5,)
self.hist = collections.Counter({(0,): 5, (2,): 2, (3,): 1,
(4,): 1, (5,): 1})
self.default_hist = Histogram()
self.hist_nbins = Histogram(n_bins=5)
self.hist_nbins_binwidth = Histogram(n_bins=5, bin_width=1.0)
self.hist_nbins_range = Histogram(n_bins=5, bin_range=(1.0, 3.5))
self.hist_binwidth_range = Histogram(bin_width=0.5,
bin_range=(1.0, 3.5))
def test_initialization(self):
assert self.default_hist.bins == 20
assert self.hist_nbins.bins == 5
assert self.hist_nbins.bin_width is None
assert self.hist_nbins_binwidth.bins == 5
assert self.hist_nbins_binwidth.bin_width is None
assert self.hist_nbins_range.bins == self.bins
assert self.hist_binwidth_range.bins == self.bins
def test_build_from_data(self):
hist = self.hist_nbins.histogram(self.data)
assert self.hist_nbins.count == 10
assert hist == self.hist
hist2 = self.hist_binwidth_range.histogram(self.data)
assert self.hist_binwidth_range.count == 10
assert hist2 == self.hist
def test_build_from_data_fail(self):
histo = Histogram(n_bins=5)
with pytest.raises(RuntimeError, match="called without data"):
histo.histogram()
def test_add_data_to_histogram(self):
histogram = Histogram(n_bins=5, bin_range=(1.0, 3.5))
hist = histogram.add_data_to_histogram(self.data)
assert histogram.count == 10
assert hist == self.hist
hist2 = histogram.add_data_to_histogram(self.data)
assert hist2 == hist+hist
assert histogram.count == 20
def test_compare_parameters(self):
assert self.hist_nbins.compare_parameters(None) is False
assert (
self.hist_nbins_range.compare_parameters(self.hist_binwidth_range)
is True
)
assert (
self.hist_binwidth_range.compare_parameters(self.hist_nbins_range)
is True
)
histo = Histogram(n_bins=5)
assert self.hist_nbins_range.compare_parameters(histo) is False
histo.histogram(self.data)
assert self.hist_nbins_range.compare_parameters(histo) is False
assert (
self.hist_nbins_range.compare_parameters(self.hist_nbins)
is False
)
assert histo.compare_parameters(self.hist_nbins) is False
assert self.hist_nbins.compare_parameters(histo) is False
def test_compare_parameters_empty(self):
# regression test; this was preventing histograms from being added
hist = self.hist_binwidth_range
assert hist.compare_parameters(hist.empty_copy())
def test_xvals(self):
histo = Histogram(n_bins=5)
_ = histo.histogram(self.data) # need this to set the bins
assert histo.left_bin_edges == self.left_bin_edges
assert histo.bin_widths == self.bin_widths
assert all(histo.xvals("l") == [1.0, 1.5, 2.0, 2.5, 3.0, 3.5])
assert all(histo.xvals("r") == [1.5, 2.0, 2.5, 3.0, 3.5, 4.0])
assert all(histo.xvals("m") == [1.25, 1.75, 2.25, 2.75, 3.25, 3.75])
def test_normalization(self):
histo = Histogram(n_bins=5)
_ = histo.histogram(self.data)
assert histo._normalization() == 5.0
def test_normalized(self):
histo = Histogram(n_bins=5)
_ = histo.histogram(self.data)
assert (list(histo.normalized().values()) ==
[1.0, 0.0, 0.4, 0.2, 0.2, 0.2])
assert (list(histo.normalized(raw_probability=True).values()) ==
[0.5, 0.0, 0.2, 0.1, 0.1, 0.1])
def test_cumulative(self):
histo = Histogram(n_bins=5)
_ = histo.histogram(self.data)
cumulative = list(histo.cumulative(None).values())
assert_items_almost_equal(cumulative, [5.0, 5.0, 7.0, 8.0, 9.0, 10.0])
assert_items_almost_equal(histo.cumulative(maximum=1.0),
[0.5, 0.5, 0.7, 0.8, 0.9, 1.0])
def test_cumulative_all_zero_warn(self):
histo = Histogram(bin_width=0.5, bin_range=(1.0, 3.5))
histo._histogram = collections.Counter({(0,): 0, (1,): 0})
with pytest.warns(UserWarning, match=r"No non-zero"):
cumul = histo.cumulative()
assert cumul(2.13) == 0
for val in cumul.values():
assert val == 0
def test_reverse_cumulative(self):
histo = Histogram(n_bins=5)
histo.histogram(self.data)
rev_cumulative = histo.reverse_cumulative(maximum=None)
assert_items_almost_equal(list(rev_cumulative.values()),
[10, 5, 5, 3, 2, 1])
rev_cumulative = histo.reverse_cumulative(maximum=1.0)
assert_items_almost_equal(list(rev_cumulative.values()),
[1.0, 0.5, 0.5, 0.3, 0.2, 0.1])
def test_reverse_cumulative_all_zero_warn(self):
histo = Histogram(bin_width=0.5, bin_range=(1.0, 3.5))
histo._histogram = collections.Counter({(0,): 0, (1,): 0})
with pytest.warns(UserWarning, match=r"No non-zero"):
rcumul = histo.reverse_cumulative()
assert rcumul(3.12) == 0
for val in rcumul.values():
assert val == 0
def test_left_bin_error(self):
histo = Histogram(bin_width=0.5, bin_range=(-1.0, 3.5))
histo.histogram([3.5])
assert histo.reverse_cumulative() != 0
def test_normalization(self):
histo = Histogram(n_bins=5)
hist = histo.histogram(self.data)
assert_equal(histo._normalization(), 5.0)
def test_build_from_data_fail(self):
histo = Histogram(n_bins=5)
histo.histogram()
def test_build_from_data_fail(self):
histo = Histogram(n_bins=5)
with pytest.raises(RuntimeError, match="called without data"):
histo.histogram()
class testHistogram(object):
def setup(self):
self.data = [1.0, 1.1, 1.2, 1.3, 2.0, 1.4, 2.3, 2.5, 3.1, 3.5]
self.nbins = 5
hist_counts = [5, 0, 2, 1, 1, 1]
self.bins = [1.0, 1.5, 2.0, 2.5, 3.0, 3.5]
self.left_bin_edges = (1.0, )
self.bin_widths = (0.5, )
self.hist = collections.Counter({
(0, ): 5,
(2, ): 2,
(3, ): 1,
(4, ): 1,
(5, ): 1
})
self.default_hist = Histogram()
self.hist_nbins = Histogram(n_bins=5)
self.hist_nbins_binwidth = Histogram(n_bins=5, bin_width=1.0)
self.hist_nbins_range = Histogram(n_bins=5, bin_range=(1.0, 3.5))
self.hist_binwidth_range = Histogram(bin_width=0.5,
bin_range=(1.0, 3.5))
def test_initialization(self):
assert_equal(self.default_hist.bins, 20)
assert_equal(self.hist_nbins.bins, 5)
assert_equal(self.hist_nbins.bin_width, None)
assert_equal(self.hist_nbins_binwidth.bins, 5)
assert_equal(self.hist_nbins_binwidth.bin_width, None)
assert_items_equal(self.hist_nbins_range.bins, self.bins)
assert_items_equal(self.hist_binwidth_range.bins, self.bins)
def test_build_from_data(self):
hist = self.hist_nbins.histogram(self.data)
assert_equal(self.hist_nbins.count, 10)
assert_items_equal(hist, self.hist)
hist2 = self.hist_binwidth_range.histogram(self.data)
assert_equal(self.hist_binwidth_range.count, 10)
assert_items_equal(hist2, self.hist)
@raises(RuntimeError)
def test_build_from_data_fail(self):
histo = Histogram(n_bins=5)
histo.histogram()
def test_add_data_to_histogram(self):
histogram = Histogram(n_bins=5, bin_range=(1.0, 3.5))
hist = histogram.add_data_to_histogram(self.data)
assert_equal(histogram.count, 10)
assert_items_equal(hist, self.hist)
hist2 = histogram.add_data_to_histogram(self.data)
assert_items_equal(hist2, hist + hist)
assert_equal(histogram.count, 20)
def test_compare_parameters(self):
assert_equal(self.hist_nbins.compare_parameters(None), False)
assert_equal(
self.hist_nbins_range.compare_parameters(self.hist_binwidth_range),
True)
assert_equal(
self.hist_binwidth_range.compare_parameters(self.hist_nbins_range),
True)
histo = Histogram(n_bins=5)
assert_equal(self.hist_nbins_range.compare_parameters(histo), False)
histo.histogram(self.data)
assert_equal(self.hist_nbins_range.compare_parameters(histo), False)
assert_equal(self.hist_nbins_range.compare_parameters(self.hist_nbins),
False)
assert_equal(histo.compare_parameters(self.hist_nbins), False)
assert_equal(self.hist_nbins.compare_parameters(histo), False)
def test_xvals(self):
histo = Histogram(n_bins=5)
hist = histo.histogram(self.data) # need this to set the bins
assert_equal(histo.left_bin_edges, self.left_bin_edges)
assert_equal(histo.bin_widths, self.bin_widths)
assert_items_equal(histo.xvals("l"), [1.0, 1.5, 2.0, 2.5, 3.0, 3.5])
assert_items_equal(histo.xvals("r"), [1.5, 2.0, 2.5, 3.0, 3.5, 4.0])
assert_items_equal(histo.xvals("m"),
[1.25, 1.75, 2.25, 2.75, 3.25, 3.75])
def test_normalization(self):
histo = Histogram(n_bins=5)
hist = histo.histogram(self.data)
assert_equal(histo._normalization(), 5.0)
def test_normalized(self):
histo = Histogram(n_bins=5)
hist = histo.histogram(self.data)
assert_items_equal(histo.normalized().values(),
[1.0, 0.0, 0.4, 0.2, 0.2, 0.2])
assert_items_equal(
histo.normalized(raw_probability=True).values(),
[0.5, 0.0, 0.2, 0.1, 0.1, 0.1])
def test_cumulative(self):
histo = Histogram(n_bins=5)
hist = histo.histogram(self.data)
cumulative = histo.cumulative(None).values()
assert_items_almost_equal(cumulative, [5.0, 5.0, 7.0, 8.0, 9.0, 10.0])
assert_items_almost_equal(histo.cumulative(maximum=1.0),
[0.5, 0.5, 0.7, 0.8, 0.9, 1.0])
def test_reverse_cumulative(self):
histo = Histogram(n_bins=5)
hist = histo.histogram(self.data)
rev_cumulative = histo.reverse_cumulative(maximum=None)
assert_items_almost_equal(rev_cumulative.values(), [10, 5, 5, 3, 2, 1])
rev_cumulative = histo.reverse_cumulative(maximum=1.0)
assert_items_almost_equal(rev_cumulative.values(),
[1.0, 0.5, 0.5, 0.3, 0.2, 0.1])