#!/usr/bin/env python
from opentreetesting import test_http_json_method, writable_api_host_and_oauth_or_exit
import datetime
import codecs
import json
import sys
import os
DOMAIN, auth_token = writable_api_host_and_oauth_or_exit(__file__)
study_id = '10'
SUBMIT_URI = DOMAIN + '/phylesystem/v1/study/' + study_id
data = {'output_nexml2json': '1.0.0'}
r = test_http_json_method(SUBMIT_URI,
'GET',
data=data,
expected_status=200,
return_bool_data=True)
if not r[0]:
sys.exit(0)
resp = r[1]
starting_commit_SHA = resp['sha']
SUBMIT_URI = DOMAIN + '/phylesystem/v1/study/{s}'.format(s=study_id)
n = resp['data']
# refresh a timestamp so that the test generates a commit
m = n['nexml']['^bogus_timestamp'] = datetime.datetime.utcnow().isoformat()
data = {
'nexson': n,
'auth_token': auth_token,
'starting_commit_SHA': starting_commit_SHA,
}
r = test_http_json_method(SUBMIT_URI,
'PUT',
#!/usr/bin/env python
import sys, os
from opentreetesting import test_http_json_method, writable_api_host_and_oauth_or_exit
DOMAIN, auth_token = writable_api_host_and_oauth_or_exit(__file__)
study = '10'
SUBMIT_URI = DOMAIN + '/phylesystem/v1/study/' + study
data = {'output_nexml2json':'1.2'}
r = test_http_json_method(SUBMIT_URI,
'GET',
data=data,
expected_status=200,
return_bool_data=True)
d = r[1]['data']
c = d['nexml'].get('^ot:testCount', 0)
if isinstance(c, list):
c = c[0]
c = c + 1
d['nexml']['^ot:testCount'] = c
starting_commit_SHA = r[1]['sha']
data = { 'nexson' : d,
'auth_token': auth_token,
'starting_commit_SHA': starting_commit_SHA,
}
r2 = test_http_json_method(SUBMIT_URI,
'PUT',
data=data,
expected_status=200,
return_bool_data=True)
PUSH_URI = DOMAIN + '/phylesystem/push/v1/' + study
r3 = test_http_json_method(PUSH_URI,
