def main():
'''main method.'''
filename = os.path.realpath(__file__)
with open(filename) as protocol_file:
runlog, _ = simulate.simulate(protocol_file, filename)
print(simulate.format_runlog(runlog))
def simulate_program(self):
"""
This will run an Opentrons simulation on the program.
"""
# If we have a critical error then don't do anything else.
if self.critical_error:
return
# Select program file if not located where we think it is.
if not os.path.isfile(self.path_to_program):
self.path_to_program, _ = \
QtWidgets.QFileDialog.getOpenFileName(self, self.tr("Select Program File"),
self.tr("C:{0}Users{0}{1}{0}Documents{0}"
.format(os.sep, os.getlogin())))
self.info_report('If you do not get a "Success" notice then the simulation failed.\nSee the terminal window '
'for the reason')
protocol_file = open(self.path_to_program)
labware_location = "{}{}custom_labware".format(os.path.dirname(self.path_to_program), os.sep)
run_log, __bundle__ = simulate(protocol_file, custom_labware_paths=[labware_location], propagate_logs=False)
# Write the simulation steps to a file
simulation_date = datetime.datetime.today().strftime("%a %b %d %H:%M %Y")
outfile = open("C:{0}Users{0}{1}{0}Documents{0}{2}_Simulation.txt"
.format(os.sep, os.getlogin(), self.selected_program), 'w', encoding="UTF-16")
step_number = 1
t = format_runlog(run_log).split("\n")
outstring = "Opentrons OT-2 Steps.\nDate: {}\nProgram File: {}\nTSV File: {}\n\nStep\tCommand\n"\
.format(simulation_date, self.selected_program, self.path_to_tsv)
for line in t:
outstring += "{}\t{}\n".format(step_number, line)
step_number += 1
outfile.write(outstring)
outfile.close()
# Write the simulation steps to the GUI
self.run_simulation_output.insertPlainText(format_runlog(run_log))
protocol_file.close()
water_aspirated += right_dispensed_vol
water_tip_height = res_tip_height(initial_water_volume-water_aspirated, water_res_well_dia, cone_vol)
count += 1
left_pipette.drop_tip()
right_pipette.drop_tip()
if __name__ == "__main__":
protocol_file = open('Dispensing_Test.py')
labware_path = "{}{}custom_labware".format(os.getcwd(), os.sep)
run_log, __bundle__ = simulate(protocol_file, custom_labware_paths=[labware_path])
run_date = datetime.datetime.today().strftime("%a %b %d %H:%M %Y")
i = 1
t = format_runlog(run_log).split("\n")
outstring = "Opentrons OT-2 Steps for {}.\nDate: {}\nProgram File: Dispensing_Test.py\n\nStep\tCommand\n" \
.format(metadata['protocolName'], run_date)
for l in t:
outstring += "{}\t{}\n".format(i, l)
i += 1
if platform.system() == "Windows":
outfile = open("C:{0}Users{0}{1}{0}Documents{0}Dispensing_Simulation.txt"
.format(os.sep, os.getlogin()), 'w', encoding="UTF-16")
outfile.write(outstring)
outfile.close()
protocol_file.close()
#SV200907 - module for simulating opentrons protocols
# Import statements
from opentrons.simulate import simulate, format_runlog
# Read file
protocol_file = open(
"C:/Users/svreugdenhil/Documents/GitHub/OT2/mollab_protocols/primer_aliquots/illu_primer.py"
)
# Simulate protocol
runlog, _bundle = simulate(protocol_file)
# Print runlog
print(format_runlog(runlog))
# -*- coding: utf-8 -*-
"""
Created on Mon May 25 18:43:58 2020
@author: Trevor Ho
"""
#%% Simulation
from opentrons.simulate import simulate, format_runlog
protocol_filename = 'Test_script.py' # TODO: change this for a new file
protocol_file = open(protocol_filename)
runlog = simulate(protocol_file, file_name='')
print(format_runlog(runlog[0])) # Line modified compared to Opentrons Doc
#%% Export simulated log file for documentation
simulated_log_filename = protocol_filename.split('.py')[0] + '_log.txt'
simulated_log = open(simulated_log_filename, 'w+')
simulated_log.write(format_runlog(runlog[0]))
simulated_log.close()
from opentrons import simulate, robot
filepath = "tpeng/OneDrive/OD__Universität/BA__Axmann/PlateScripts/"
outpath = "tpeng/OneDrive/OD__Universität/BA__Axmann/protocol_simulations/"
filename = "P03_OTV1_GlcGradientONECELL_BigFalconRack"
PC = False
print_output = False
if PC:
header = "D:/"
else:
header = "C:/Users/"
protocol_file = open(header + filepath + filename + ".py")
robot.reset()
runlog = simulate.simulate(protocol_file, file_name=filename + ".py")
protocol_file.close()
if print_output:
print(simulate.format_runlog(runlog[0]))
else:
file = open(header + outpath + filename + "_out.txt", "w")
file.write(simulate.format_runlog(runlog[0]))
file.close()
robot.reset()
