def setUp(self):
Robot.reset_for_tests()
self.robot = Robot.get_instance()
self.robot.connect()
self.trash = containers.load('point', 'A1', 'trash')
self.tiprack = containers.load('tiprack-200ul', 'B2', 'p200-rack')
self.trough = containers.load('trough-12row', 'B2', 'trough')
self.plate = containers.load('96-flat', 'A2', 'magbead')
self.p200 = instruments.Pipette(
name="p200",
trash_container=self.trash,
tip_racks=[self.tiprack],
min_volume=10, # These are variable
axis="b",
channels=1)
self.p1000 = instruments.Pipette(
name="p1000",
trash_container=self.trash,
tip_racks=[self.tiprack],
min_volume=100, # These are variable
axis="a",
channels=1)
def setUp(self):
Robot.reset_for_tests()
self.trash_box = containers.load('trash-box', 'A1')
self.wheaton_vial_rack = containers.load('wheaton_vial_rack', 'A2')
self.tube_rack_80well = containers.load('tube-rack-80well', 'A3')
self.T75_flask = containers.load('T75-flask', 'B1')
self.T25_flask = containers.load('T25-flask', 'B2')
def setUp(self):
Robot.reset_for_tests()
self.robot = Robot.get_instance()
self.robot.connect()
self.trash = containers.load('point', 'A1', 'trash')
self.tiprack = containers.load('tiprack-200ul', 'B2', 'p200-rack')
self.trough = containers.load('trough-12row', 'B2', 'trough')
self.plate = containers.load('96-flat', 'A2', 'magbead')
self.p200 = instruments.Pipette(
name="p200",
trash_container=self.trash,
tip_racks=[self.tiprack],
min_volume=10, # These are variable
axis="b",
channels=1
)
self.p1000 = instruments.Pipette(
name="p1000",
trash_container=self.trash,
tip_racks=[self.tiprack],
min_volume=100, # These are variable
axis="a",
channels=1
)
def test_all(self):
failures = []
for protocol_path, protocol_dict in self.get_protocols():
Robot.reset_for_tests()
try:
jpp = JSONProtocolProcessor(protocol_dict)
jpp.process()
except Exception as e:
failures.append((protocol_path, e, jpp.errors))
if failures:
print('The following protocols failed to parse')
for path, exc, reason in failures:
print("[{}]. Reason: {}".format(path, exc))
assert False
def setUp(self):
self.robot = Robot.reset_for_tests()
myport = self.robot.VIRTUAL_SMOOTHIE_PORT
self.robot.connect(port=myport)
self.robot.home()
self.trash = containers.load('point', 'A1')
self.tiprack1 = containers.load('tiprack-10ul', 'B2')
self.tiprack2 = containers.load('tiprack-10ul', 'B3')
self.plate = containers.load('96-flat', 'A2')
self.p200 = instruments.Pipette(
trash_container=self.trash,
tip_racks=[self.tiprack1, self.tiprack2],
max_volume=200,
min_volume=10, # These are variable
axis="b",
channels=1
)
self.p200.reset()
self.p200.calibrate_plunger(top=0, bottom=10, blow_out=12, drop_tip=13)
self.robot.home(enqueue=False)
_, _, starting_z = self.robot._driver.get_head_position()['current']
def test_all(self):
failures = []
for protocol_path, protocol_dict in self.get_protocols():
Robot.reset_for_tests()
try:
jpp = JSONProtocolProcessor(protocol_dict)
jpp.process()
except Exception as e:
failures.append(
(protocol_path, e, jpp.errors)
)
if failures:
print('The following protocols failed to parse')
for path, exc, reason in failures:
print("[{}]. Reason: {}".format(path, exc))
assert False
def setUp(self):
self.robot = Robot.reset_for_tests()
myport = self.robot.VIRTUAL_SMOOTHIE_PORT
self.robot.connect(port=myport)
self.robot.home()
self.trash = containers.load('point', 'A1')
self.tiprack1 = containers.load('tiprack-10ul', 'B2')
self.tiprack2 = containers.load('tiprack-10ul', 'B3')
self.plate = containers.load('96-flat', 'A2')
self.p200 = instruments.Pipette(
trash_container=self.trash,
tip_racks=[self.tiprack1, self.tiprack2],
max_volume=200,
min_volume=10, # These are variable
axis="b",
channels=1)
self.p200.reset()
self.p200.calibrate_plunger(top=0, bottom=10, blow_out=12, drop_tip=13)
self.robot.home(enqueue=False)
_, _, starting_z = self.robot._driver.get_head_position()['current']
def setUp(self):
Robot.reset_for_tests()
self.robot = Robot.get_instance()
self.robot.connect()
self.plate = containers.load('96-flat', 'A1', 'plate')
self.p200 = instruments.Pipette(name="p200", axis="b")
self.p200.delete_calibration_data()
well = self.plate[0]
pos = well.from_center(x=0, y=0, z=0, reference=self.plate)
self.location = (self.plate, pos)
well_deck_coordinates = well.center(well.get_deck())
dest = well_deck_coordinates + Vector(1, 2, 3)
self.robot.move_head(x=dest['x'], y=dest['y'], z=dest['z'])
self.p200.calibrate_position(self.location)
def setUp(self):
Robot.reset_for_tests()
self.robot = Robot.get_instance()
self.robot.connect()
self.plate = containers.load('96-flat', 'A1', 'plate')
self.p200 = instruments.Pipette(name="p200", axis="b")
self.p200.delete_calibration_data()
well = self.plate[0]
pos = well.from_center(x=0, y=0, z=0, reference=self.plate)
self.location = (self.plate, pos)
well_deck_coordinates = well.center(well.get_deck())
dest = well_deck_coordinates + Vector(1, 2, 3)
self.robot.move_head(x=dest['x'], y=dest['y'], z=dest['z'])
self.p200.calibrate_position(self.location)
def setUp(self):
self.robot = Robot.reset_for_tests()
options = {'limit_switches': False}
self.robot.connect(options=options)
self.robot.home()
self.plate = containers.load('96-flat', 'A2')
self.magbead = instruments.Magbead(mosfet=0, container=self.plate)
self.robot._driver.set_mosfet = mock.Mock()
self.robot._driver.wait = mock.Mock()
def setUp(self):
self.robot = Robot.reset_for_tests()
options = {
'limit_switches': False
}
self.robot.connect(options=options)
self.robot.home()
self.plate = containers.load('96-flat', 'A2')
self.magbead = instruments.Magbead(mosfet=0, container=self.plate)
self.robot._driver.set_mosfet = mock.Mock()
self.robot._driver.wait = mock.Mock()
def setUp(self):
Robot.reset_for_tests()
self.robot = Robot()
def setUp(self):
self.robot = Robot.reset_for_tests()
self.p200 = instruments.Pipette(axis='b', max_volume=200)
self.plate = containers.load('96-flat', 'C1')
def setUp(self):
Robot.reset_for_tests()
self.plate = containers.load("96-flat", "A2")
def setUp(self):
Robot.reset_for_tests()
self.robot = Robot.get_instance()
self.robot.connect()
self.protocol = None
def setUp(self):
Robot.reset_for_tests()
self.plate = containers.load('96-flat', 'A2')
def setUp(self):
Robot.reset_for_tests()
self.robot = Robot()
def setUp(self):
Robot.reset_for_tests()
self.robot = Robot.get_instance()
self.robot.connect()
self.protocol = None
def setUp(self):
Robot.reset_for_tests()
self.robot = Robot.get_instance()
def setUp(self):
Robot.reset_for_tests()
self.robot = Robot.get_instance()
