from kruskal_mann_whitney_U import KMWU
pathname = "/Volumes/LaCie/Projects/aDN/imaging/OR83b_Chrimson_aDN_GCaMP6f/Results/"
labels = ["female", "matedFemale", "male"]
genders = ["female", "_matedFemale", "_male"]
identifiers = [".mat", "10ms", "40Hz", "0uMPTX"]
neuronparts = ["medial", "lateral"]
barylim = [-32, 220]
ylim = [-0.1, 0.5]
barcols = ["#ff4cff", "#cc00cc", "#00cc00"]
optoPlot(genders=genders,
labels=labels,
pathname=pathname,
identifiers=identifiers,
neuronparts=neuronparts,
barylim=barylim,
ylim=ylim,
barcols=barcols)
print("Stats:")
print("5s pulse:")
KMWU(pathname=pathname,
genders=genders,
compareOn="genders",
pulsedurs=[5],
identifiers=identifiers,
neuronparts=neuronparts)
labels = ["female", "mated female", "male"]
genders = ["_female", "matedFemale", "_male_fly"]
neuronparts = ["medial", "lateral"]
ylim = [-0.1, 0.5]
barylim = [-2, 250]
barcols = ["#ff4cff", "#cc00cc", "#00cc00"]
identifiers0 = [".mat", "10ms", "40Hz", "s0uMPTX"]
identifiers150 = [".mat", "10ms", "40Hz", "150uMPTX"]
identifiers300 = [".mat", "10ms", "40Hz", "300uMPTX"]
optoPlot(genders=genders,
labels=labels,
pathname=pathname,
identifiers=identifiers0,
neuronparts=neuronparts,
ylim=ylim,
barylim=barylim,
barcols=barcols,
expname='mean_pulse_5s_0uMPTX.eps')
print("Stats:")
print("0uM PTX:")
KMWU(pathname=pathname,
genders=genders,
neuronparts=neuronparts,
compareOn="genders",
pulsedurs=[5],
identifiers=identifiers0)
import optogenetic_plot
from optogenetic_plot import optoPlot
import mann_whitney_U
from mann_whitney_U import MWU
pathname =\
"/Volumes/LaCie/Projects/aDN/imaging/LC10_Chrimson_AL5a_GCaMP6f/Results/"
labels = ["female", "male", "female no r", "male no r"]
genders = ["_female", "_male"]
neuronparts = ["AOTu_", "AOTuNoRetinal"]
optoPlot(genders=genders,
labels=labels,
pathname=pathname,
neuronparts=neuronparts,
ylim=[-0.1, 2.2],
barylim=[0, 230],
pulsedur=5,
expname='mean_pulse_5s.eps',
allonerow=True)
optoPlot(genders=genders,
labels=labels,
pathname=pathname,
neuronparts=neuronparts,
ylim=[-0.1, 2.2],
barylim=[0, 230],
pulsedur=1,
expname='mean_pulse_1s.eps',
allonerow=True)
import optogenetic_plot
from optogenetic_plot import optoPlot
pathname = "/Volumes/LaCie/Projects/aDN/imaging/LC10_Chrimson_AL5a_GCaMP6f/Results/"
labels = ["8", "10", "12", "20"]
genders = ["_male"]
neuronparts = ["8ms", "10ms", "12ms", "20ms"]
identifiers = [".mat", "40Hz"]
optoPlot(genders=genders,
labels=labels,
pathname=pathname,
neuronparts=neuronparts,
ylim=[-0.1, 2.2],
barylim=[0, 230],
pulsedur=5,
expname='pulselength_5s.eps',
allonerow=True,
identifiers=identifiers)
optoPlot(genders=genders,
labels=labels,
pathname=pathname,
neuronparts=neuronparts,
ylim=[-0.1, 2.2],
barylim=[0, 230],
pulsedur=1,
expname='pulselength_1s.eps',
allonerow=True,
identifiers=identifiers)
import kruskal_mann_whitney_U
from kruskal_mann_whitney_U import KMWU
import mann_whitney_U_multicomp
from mann_whitney_U_multicomp import MWU_multi
pathname = "/Volumes/LaCie/Projects/aDN/imaging/LC10_Chrimson_AL5a_GCaMP6f/Results/"
labels = ["female", "male"]
genders = ["_female", "_male"]
neuronparts = ["AOTu_", "AOTuNoRetinal"]
identifiers = ["0uMPTX", ".mat", "40Hz", "10ms"]
optoPlot(genders=genders,
labels=labels,
pathname=pathname,
neuronparts=neuronparts,
ylim=[-0.1, 2.4],
barylim=[-2, 1500],
pulsedur=5,
expname='mean_pulse_5s.eps',
identifiers=identifiers,
ytickrange=np.arange(0, 1500, step=500))
print("Stats 5s:")
_ = MWU_multi(genders=genders,
neuronparts=neuronparts,
identifiers=identifiers,
pathname=pathname,
pulsedurs=[5])
optoPlot(genders=genders,
labels=labels,
import optogenetic_plot
from optogenetic_plot import optoPlot
import mann_whitney_U
from mann_whitney_U import MWU
pathname =\
"/Volumes/LaCie/Projects/aDN/imaging/ppk23-lexA_aDN-GCaMP6f/Results/"
labels = ["female"]
genders = ["_female"]
neuronparts = ["medial", "lateral"]
optoPlot(genders=genders,
labels=labels,
pathname=pathname,
neuronparts=neuronparts,
ylim=[-0.1, 1],
barylim=[0, 30],
pulsedur=5,
expname='mean_pulse_5s.eps')
print("Stats:")
print("5s suppl figure:")
MWU(pathname=pathname,
genders=genders,
neuronparts=neuronparts,
compareOn="genders",
pulsedurs=[5])
pathname =\
"/Volumes/LaCie/Projects/aDN/imaging/GH146_chrimson_aDN_GCaMP6f/Results/"
labels = ["matedFemale"]
genders = ["_matedFemale_NonRetinal"]
identifiers = [".mat", "10ms", "40Hz", "0uMPTX"]
neuronparts = ["medial", "lateral"]
barylim = [-32, 220]
ylim = [-0.1, 0.5]
barcols = ["#ff4cff", "#cc00cc", "#00cc00"]
optoPlot(genders=genders,
labels=labels,
pathname=pathname,
identifiers=identifiers,
neuronparts=neuronparts,
barylim=barylim,
barcols=barcols,
ylim=ylim,
figuresize=(3, 4),
expname='mean_non_retinal.eps')
print("Stats:")
print("5s pulse:")
KMWU(pathname=pathname,
genders=genders,
compareOn="neuronparts",
pulsedurs=[5],
identifiers=identifiers,
neuronparts=neuronparts)