# Get projects with medium curation level.
osb_projects = osb.get_projects('Medium')
for model_name in nml2_model_list:
print(model_name)
path = os.path.join(NEUROML2_PATH, model_name)
nml_files = glob.glob(path + "/*.nml")
if not len(nml_files):
qprint("No .nml files found for model %s" % model_name)
for nml_file in nml_files:
nml = loaders.NeuroMLLoader.load(nml_file)
for cell in nml.cells:
nlex_id = cell.neuro_lex_id
if nlex_id is None:
project = osb.get_project_with_identifier(
model_name, osb_projects)
if project:
nlex_id_list = project.NEUROLEX_IDS_CELLS
if len(nlex_id_list):
if ';' not in nlex_id_list:
nlex_id = nlex_id_list
else:
qprint("Multiple neurolex ids found; skipping...")
continue
else:
qprint("No neurolex id found; skipping...")
continue
qprint("Model %s had neurolex id %s" % (model_name, nlex_id))
# Specify reference data for this test.
reference_data = neuroelectro.NeuroElectroSummary(
# Get projects with medium curation level.
osb_projects = osb.get_projects('Medium')
for model_name in nml2_model_list:
print(model_name)
path = os.path.join(NEUROML2_PATH,model_name)
nml_files = glob.glob(path+"/*.nml")
if not len(nml_files):
qprint("No .nml files found for model %s" % model_name)
for nml_file in nml_files:
nml = loaders.NeuroMLLoader.load(nml_file)
for cell in nml.cells:
nlex_id = cell.neuro_lex_id
if nlex_id is None:
project = osb.get_project_with_identifier(model_name,osb_projects)
if project:
nlex_id_list = project.NEUROLEX_IDS_CELLS
if len(nlex_id_list):
if ';' not in nlex_id_list:
nlex_id = nlex_id_list
else:
qprint("Multiple neurolex ids found; skipping...")
continue
else:
qprint("No neurolex id found; skipping...")
continue
qprint("Model %s had neurolex id %s" % (model_name,nlex_id))
# Specify reference data for this test.
reference_data = neuroelectro.NeuroElectroSummary(
path = os.path.join(OSB_MODELS,brain_area,neuron_type,model_name,"neuroConstruct")
if not os.path.isdir(path):
continue
if model_name in ['korngreen-pyramidal',
'IzhikevichModel',
'RothmanEtAl_KoleEtAl_PyrCell']:
continue
#if models_tested not in [11,17]:
# models_tested += 1
# continue
print("\r\r*** %d: %s ***\r\r" % (models_tested,model_name))
models_tested += 1
identifier = model_name#.lower()
project = osb.get_project_with_identifier(identifier,projects=osb_projects)
if project is None:
print("No OSB project identifier found for model %s" % model_name)
continue
neurolex_ids = project.NEUROLEX_IDS_CELLS
if not neurolex_ids or not len(neurolex_ids):
print("No neurolex ids found for model %s" % model_name)
continue
if ';' not in neurolex_ids:
neurolex_id = neurolex_ids
else:
print("Multiple neurolex ids found; skipping...")
continue
print("Neurolex ID is %s" % neurolex_id)
if neurolex_id in nlex_ids:
