def plant(expnums, ccd, rmin, rmax, ang, width, version='s'):
'''run the plant script on this combination of exposures'''
ptf = open('proc-these-files','w')
ptf.write("# Files to be planted and search\n")
ptf.write("# image fwhm plant\n")
for expnum in expnums:
fwhm = storage.get_fwhm(expnum,ccd)
filename = storage.get_image(expnum, ccd=ccd, version=version)
ptf.write("%s %3.1f YES\n" % ( filename[0:-5],
fwhm ))
for ext in ['apcor',
'obj.jmp',
'trans.jmp',
'psf.fits',
'mopheader',
'phot',
'zeropoint.used']:
apcor = storage.get_image(expnum, ccd=ccd, version='s',
ext=ext)
ptf.close()
cmd_args = ['plant.csh',os.curdir,
str(rmin), str(rmax), str(ang), str(width)]
util.exec_prog(cmd_args)
if args.dryrun:
# Don't push back to VOSpace
return
uri = storage.get_uri('Object',ext='planted',version='',
subdir=str(
expnums[0])+"/ccd%s" % (str(ccd).zfill(2)))
storage.copy('Object.planted',uri)
uri = os.path.join(os.path.dirname(uri), 'shifts')
storage.copy('shifts', uri)
for expnum in expnums:
uri = storage.get_uri(expnum,
ccd=ccd,
version=version,
ext='fits', prefix='fk')
filename = os.path.basename(uri)
storage.copy(filename, uri)
for ext in ['mopheader',
'psf.fits',
'fwhm',
'apcor', 'zeropoint.used', 'trans.jmp']:
storage.delete(expnum, ccd, 's', ext, prefix='fk')
storage.vlink(expnum, ccd, 'p', ext,
expnum, ccd, 's', ext, l_prefix='fk')
return
def scramble(expnums, ccd, version='p'):
'''run the plant script on this combination of exposures'''
mjds = []
fobjs = []
for expnum in expnums:
filename = storage.get_image(expnum, ccd=ccd, version=version)
fobjs.append(fits.open(filename))
# Pull out values to replace in headers.. must pull them
# as otherwise we get pointers...
mjds.append(fobjs[-1][0].header['MJD-OBS'])
order = [1, 0, 2]
for idx in range(len(fobjs)):
logging.info("Flipping %d to %d" %
(fobjs[idx][0].header['EXPNUM'], expnums[order[idx]]))
fobjs[idx][0].header['EXPNUM'] = expnums[order[idx]]
fobjs[idx][0].header['MJD-OBS'] = mjds[order[idx]]
uri = storage.get_uri(expnums[order[idx]],
ccd=ccd,
version='s',
ext='fits')
fname = os.path.basename(uri)
if os.access(fname, os.F_OK):
os.unlink(fname)
fobjs[idx].writeto(fname)
storage.copy(fname, uri)
# now make a link between files that the plant system will need
for ext in [
'apcor', 'obj.jmp', 'mopheader', 'phot', 'psf.fits',
'trans.jmp', 'zeropoint.used', 'fwhm'
]:
storage.delete(expnums[order[idx]], ccd, 's', ext)
storage.vlink(expnums[idx], ccd, 'p', ext, expnums[order[idx]],
ccd, 's', ext)
return
def plant(expnums, ccd, rmin, rmax, ang, width, version="s"):
"""run the plant script on this combination of exposures"""
ptf = open("proc-these-files", "w")
ptf.write("# Files to be planted and search\n")
ptf.write("# image fwhm plant\n")
for expnum in expnums:
fwhm = storage.get_fwhm(expnum, ccd, version=version)
filename = storage.get_image(expnum, ccd=ccd, version=version)
ptf.write("%s %3.1f YES\n" % (filename[0:-5], fwhm))
for ext in ["apcor", "obj.jmp", "trans.jmp", "psf.fits", "mopheader", "phot", "zeropoint.used"]:
apcor = storage.get_image(expnum, ccd=ccd, version=version, ext=ext)
ptf.close()
cmd_args = ["plant.csh", os.curdir, str(rmin), str(rmax), str(ang), str(width)]
util.exec_prog(cmd_args)
if args.dryrun:
# Don't push back to VOSpace
return
uri = storage.get_uri("Object", ext="planted", version="", subdir=str(expnums[0]) + "/ccd%s" % (str(ccd).zfill(2)))
storage.copy("Object.planted", uri)
uri = os.path.join(os.path.dirname(uri), "plant.shifts")
storage.copy("shifts", uri)
for expnum in expnums:
uri = storage.get_uri(expnum, ccd=ccd, version=version, ext="fits", prefix="fk")
filename = os.path.basename(uri)
storage.copy(filename, uri)
for ext in ["mopheader", "psf.fits", "fwhm", "apcor", "zeropoint.used", "trans.jmp"]:
storage.delete(expnum, ccd, "s", ext, prefix="fk")
storage.vlink(expnum, ccd, "s", ext, expnum, ccd, "s", ext, l_prefix="fk")
return
def scramble(expnums, ccd, version='p'):
'''run the plant script on this combination of exposures'''
mjds = []
fobjs = []
for expnum in expnums:
filename = storage.get_image(expnum, ccd=ccd, version=version)
fobjs.append(fits.open(filename))
# Pull out values to replace in headers.. must pull them
# as otherwise we get pointers...
mjds.append(fobjs[-1][0].header['MJD-OBS'])
order = [1,0,2]
for idx in range(len(fobjs)):
logging.info("Flipping %d to %d" % ( fobjs[idx][0].header['EXPNUM'],
expnums[order[idx]]))
fobjs[idx][0].header['EXPNUM'] = expnums[order[idx]]
fobjs[idx][0].header['MJD-OBS'] = mjds[order[idx]]
uri = storage.get_uri(expnums[order[idx]],
ccd=ccd,
version='s',
ext='fits')
fname = os.path.basename(uri)
if os.access(fname, os.F_OK):
os.unlink(fname)
fobjs[idx].writeto(fname)
storage.copy(fname, uri)
# now make a link between files that the plant system will need
for ext in ['apcor', 'obj.jmp', 'mopheader', 'phot',
'psf.fits','trans.jmp', 'zeropoint.used', 'fwhm']:
if storage.exists(storage.get_uri(expnums[order[idx]], ccd, 's', ext)):
storage.delete(expnums[order[idx]], ccd, 's', ext)
storage.vlink(expnums[idx], ccd, 'p', ext,
expnums[order[idx]], ccd, 's', ext)
return
from ossos import storage
triples=storage.open_vos_or_local('vos:OSSOS/triplets/E_13A_discovery_expnums.txt').read()
for line in triples.split('\n'):
line = line.strip(' ')
if not len(line) > 0:
continue
for expnum in line.split(' ')[0:3]:
for ccd in range(36):
for ext in ['.apcor',
'.zeropoint.used',
'.psf.fits',
'.mopheader',
'.fwhm',
'.trans.jmp']:
storage.delete(expnum=expnum, ccd=ccd, version='s', ext=ext, prefix='fk')
storage.vlink(s_expnum=expnum,
s_ccd=ccd,
s_version='s',
s_prefix='',
s_ext=ext,
l_expnum=expnum,
l_ccd=ccd,
l_version='s',
l_prefix='fk',
l_ext =ext)
print expnum,ccd,"DONE"
sys.exit()
def plant(expnums, ccd, rmin, rmax, ang, width, version='s'):
'''run the plant script on this combination of exposures'''
ptf = open('proc-these-files', 'w')
ptf.write("# Files to be planted and search\n")
ptf.write("# image fwhm plant\n")
for expnum in expnums:
fwhm = storage.get_fwhm(expnum, ccd)
filename = storage.get_image(expnum, ccd=ccd, version=version)
ptf.write("%s %3.1f YES\n" % (filename[0:-5], fwhm))
for ext in [
'apcor', 'obj.jmp', 'trans.jmp', 'psf.fits', 'mopheader',
'phot', 'zeropoint.used'
]:
apcor = storage.get_image(expnum, ccd=ccd, version='s', ext=ext)
ptf.close()
cmd_args = [
'plant.csh', os.curdir,
str(rmin),
str(rmax),
str(ang),
str(width)
]
util.exec_prog(cmd_args)
if args.dryrun:
# Don't push back to VOSpace
return
uri = storage.get_uri('Object',
ext='planted',
version='',
subdir=str(expnums[0]) + "/ccd%s" %
(str(ccd).zfill(2)))
storage.copy('Object.planted', uri)
uri = os.path.join(os.path.dirname(uri), 'shifts')
storage.copy('shifts', uri)
for expnum in expnums:
uri = storage.get_uri(expnum,
ccd=ccd,
version=version,
ext='fits',
prefix='fk')
filename = os.path.basename(uri)
storage.copy(filename, uri)
for ext in [
'mopheader', 'psf.fits', 'fwhm', 'apcor', 'zeropoint.used',
'trans.jmp'
]:
storage.delete(expnum, ccd, 's', ext, prefix='fk')
storage.vlink(expnum,
ccd,
'p',
ext,
expnum,
ccd,
's',
ext,
l_prefix='fk')
return
