def __init__(self, path=None, **keywords):
MatrixFile.__init__(self, path=path, **keywords)
self.familyID2MemberList= {}
self.familySize2SampleIDList = {}
self._pedigreeGraph = None
self._childNodeSet = None
def __init__(self, path=None, **keywords):
MatrixFile.__init__(self, path=path, **keywords)
self.header = None
self.col_name2index = None #key is sampleID, value is index of first haplotype
self.sampleIDList = []
self.sampleID2index = {} #same as col_name2index
self.locusIDList = []
self.haplotypeMatrix = []
self.snpData = None #to store everything above . SNPData type
def __init__(self, path=None, **keywords):
MatrixFile.__init__(self, path=path, **keywords)
#summary data
self.no_of_intervals = 0
self.interval_value_ls = []
self.interval_length_ls = []
self.chromosome_size = 0
self.min_interval_value = None
self.max_interval_value = None
self.median_interval_value = None
self.min_interval_length = None
self.max_interval_length = None
self.median_interval_length = None
self.interval_ls = []