def prepProcDir(param,baseDir,targetDir=None):
if targetDir!=None:
procPath=targetDir
else:
procPath=os.path.join(baseDir,param.targetDir)
if os.path.exists(procPath):
try:
shutil.rmtree(procPath)
except:
print "Process Directory %s exists. Having trouble removing it"%procPath
os.mkdir(procPath,0777)
param.write2file(procPath)
return os.path.abspath(procPath)
def genRunModel(param,origSpec,basePath):
currentNode=pyfica.launcher2.getNodeName()
fica_bin=pyfica.launcher2.machineConf[currentNode]['fica_bin']
ficaWorkDir=os.path.join(basePath,param.targetDir)
try:
os.makedirs(ficaWorkDir)
except:
shutil.rmtree(ficaWorkDir)
os.makedirs(ficaWorkDir)
param.write2file(ficaWorkDir)
#print "Running %s on %s in dir %s"%(fica_bin,currentNode,ficaWorkDir)
proc=subprocess.Popen([fica_bin],stdout=-1,cwd=ficaWorkDir,close_fds=True)
#Saving Log File:
file(os.path.join(ficaWorkDir,'fica.log'),'w').write(proc.stdout.read())
proc.stdout.close()
#print "tested %s"%proc.stdout.read()
#return "I have run %s on %s"%(basePath,getNodeName())
model=pyfica.read.model(param,ficaWorkDir,origSpec)
model.fitness=fitFunc(model)
return model
