Python resolve_scatter_tool_contract 예제들

예제 #1

파일: test_resolver.py 프로젝트: pb-cdunn/pbcommand

 def test_sanity(self):
     d = get_temp_dir("resolved-tool-contract")
     tc = load_tool_contract_from(get_data_file(self.FILE_NAME))
     rtc = resolve_scatter_tool_contract(tc, self.INPUT_FILES, d, d, self.MAX_NPROC, self.TOOL_OPTIONS, self.MAX_NCHUNKS, self.CHUNK_KEYS)
     self.assertIsInstance(rtc, ResolvedToolContract)
     self.assertIsInstance(rtc.task, ResolvedScatteredToolContractTask)
     self.assertEqual(rtc.task.max_nchunks, 7)

예제 #2

 def test_sanity(self):
     d = get_temp_dir("resolved-tool-contract")
     tc = load_tool_contract_from(get_tool_contract(self.FILE_NAME))
     rtc = resolve_scatter_tool_contract(tc, self.INPUT_FILES, d, d, self.MAX_NPROC, self.TOOL_OPTIONS, self.MAX_NCHUNKS, self.CHUNK_KEYS, False)
     self.assertIsInstance(rtc, ResolvedToolContract)
     self.assertIsInstance(rtc.task, ResolvedScatteredToolContractTask)
     self.assertEqual(rtc.task.max_nchunks, 7)
     self.assertEqual(rtc.task.is_distributed, False)

예제 #3

파일: pb_io.py 프로젝트: pb-cdunn/pbsmrtpipe

def static_scatter_meta_task_to_rtc(static_meta_task, task, task_options, task_dir, tmp_dir, max_nproc, max_nchunks, chunk_keys, is_distributed):
    rtc = resolve_scatter_tool_contract(static_meta_task.tool_contract, task.input_files, task_dir, tmp_dir, max_nproc, task_options, max_nchunks, chunk_keys, is_distributed)
    # See the above comment for this
    rtc.task.output_files = task.output_files
    rtc.task.nproc = task.nproc
    task.resources = task.resources

    return rtc

예제 #4

파일: pb_io.py 프로젝트: skinner/pbsmrtpipe

def static_scatter_meta_task_to_rtc(static_meta_task, task, task_options, task_dir, tmp_dir, max_nproc, max_nchunks, chunk_keys):
    rtc = resolve_scatter_tool_contract(static_meta_task.tool_contract, task.input_files, task_dir, tmp_dir, max_nproc, task_options, max_nchunks, chunk_keys)
    # See the above comment for this
    rtc.task.output_files = task.output_files
    rtc.task.is_distributed = static_meta_task.is_distributed
    rtc.task.nproc = task.nproc
    task.resources = task.resources

    return rtc

예제 #5

 def _to_rtc(self, tc, output_dir, tmp_dir):
     return resolve_scatter_tool_contract(tc, self.INPUT_FILES, output_dir,
                                          tmp_dir, self.MAX_NPROC,
                                          self.TASK_OPTIONS,
                                          self.MAX_NCHUNKS, self.CHUNK_KEYS,
                                          self.IS_DISTRIBUTED)

예제 #6

파일: core.py 프로젝트: pb-cdunn/pbcommand

 def _to_rtc(self, tc, output_dir, tmp_dir):
     return resolve_scatter_tool_contract(tc, self.INPUT_FILES, output_dir, tmp_dir, self.MAX_NPROC, self.TASK_OPTIONS, self.MAX_NCHUNKS, self.CHUNK_KEYS)