out.write('0\n')
out.close()
except locket.LockError:
return HTTP(102, "Conversion to NexSON still running")
if output in ['nexson', 'ot:nexson']:
response.view = 'generic.json'
nex = json.load(codecs.open(NEXSON_FILEPATH, 'rU', encoding='utf-8'))
num_trees = count_num_trees(nex, NEXSON_VERSION)
r = {'data': nex}
bundle_properties = json.load(
codecs.open(RETURN_ATT_FILEPATH, 'rU', encoding='utf-8'))
try:
dd = bundle_properties.get('dataDeposit')
if dd:
n = nex.get('nex:nexml') or nex['nex']
add_resource_meta(n, "ot:dataDeposit", dd, NEXSON_VERSION)
except:
pass
r.update(bundle_properties)
r['numberOfTrees'] = num_trees
r['nexml2json'] = NEXSON_VERSION
read_inp_format = bundle_properties.get('inputFormat', '')
read_filename = bundle_properties.get('filename', '')
# Since import was successful, we should copy the original data to a file in the supporting-files area
if request.vars.file is not None:
file_data = request.vars.file.file
else:
# mimic the expected upload file field by coercing pasted text to a file-like object
import StringIO
file_data = StringIO.StringIO()
out = open(NEXSON_DONE_FILEPATH, 'w')
out.write('0\n')
out.close()
except locket.LockError:
return HTTP(102, "Conversion to NexSON still running")
if output in ['nexson', 'ot:nexson']:
response.view = 'generic.json'
nex = json.load(codecs.open(NEXSON_FILEPATH, 'rU', encoding='utf-8'))
num_trees = count_num_trees(nex, NEXSON_VERSION)
r = {'data': nex}
bundle_properties = json.load(codecs.open(RETURN_ATT_FILEPATH, 'rU', encoding='utf-8'))
try:
dd = bundle_properties.get('dataDeposit')
if dd:
n = nex.get('nex:nexml') or nex['nex']
add_resource_meta(n, "ot:dataDeposit", dd, NEXSON_VERSION)
except:
pass
r.update(bundle_properties)
r['numberOfTrees'] = num_trees
r['nexml2json'] = NEXSON_VERSION
read_inp_format = bundle_properties.get('inputFormat', '')
read_filename = bundle_properties.get('filename', '')
# Since import was successful, we should copy the original data to a file in the supporting-files area
if request.vars.file is not None:
file_data = request.vars.file.file
else:
# mimic the expected upload file field by coercing pasted text to a file-like object
import StringIO
file_data = StringIO.StringIO()