def test_get_hpo_from_omim(connection, hpo_terms, mim_terms): """docstring for test_get_description""" populate_disease( connection=connection, disease_terms=mim_terms, ) cursor = get_cursor(connection=connection) cursor.execute("SELECT * FROM disease WHERE mim_nr = '600920'") hpo_ids = set() for row in cursor.fetchall(): hpo_ids.add(row['mim_hpo']) assert hpo_ids == set([767, 3042,5280,1363,772,1195,2987])
def test_get_hpo_from_omim(connection, hpo_terms, mim_terms): """docstring for test_get_description""" populate_disease( connection=connection, disease_terms=mim_terms, ) cursor = get_cursor(connection=connection) cursor.execute("SELECT * FROM disease WHERE mim_nr = '600920'") hpo_ids = set() for row in cursor.fetchall(): hpo_ids.add(row['mim_hpo']) assert hpo_ids == set([767, 3042, 5280, 1363, 772, 1195, 2987])
def database(request, connection, hpo_terms, mim_terms, genes): """Return a populated database""" populate_hpo( connection=connection, hpo_terms=hpo_terms, ) populate_disease( connection=connection, disease_terms=mim_terms ) populate_genes( connection=connection, genes=genes ) return connection