def get_fasta_file_names(self):
fa_files = []
pipelne_utils = PipelneUtils()
files = pipelne_utils.get_all_files(self.fasta_dir)
for full_name in files.keys():
if (files[full_name][1] == ".unique") and ((files[full_name][0].split(".")[-1].strip() == "fa") or (files[full_name][0].split("_")[-1] == "FILTERED")):
fa_files.append(full_name)
return fa_files
def get_fasta_file_names(self):
fa_files = []
pipelne_utils = PipelneUtils()
files = pipelne_utils.get_all_files(self.in_file_path)
for full_name in files.keys():
if (files[full_name][1] == ".unique") and (files[full_name][0].split(".")[-1].strip() == "fa"):
print full_name
fa_files.append(full_name)
return fa_files
def get_fasta_file_names(self):
fa_files = []
pipelne_utils = PipelneUtils()
files = pipelne_utils.get_all_files(self.fasta_dir)
for full_name in files.keys():
# if (files[full_name][1] == ".unique") and ((files[full_name][0].split(".")[-1].strip() == "fa") or (files[full_name][0].split("_")[-1] == C.filtered_suffix)):
if (full_name.endswith(self.nonchimeric_suffix)):
fa_files.append(full_name)
print full_name
self.suffix_used = self.nonchimeric_suffix
next
elif (full_name.endswith(self.fa_unique_suffix)):
fa_files.append(full_name)
print full_name
self.suffix_used = self.fa_unique_suffix
return fa_files