def _wait_for_history(ctx, gi, history_id):
def has_active_jobs(gi):
if has_jobs_in_states(gi, history_id, ["new", "upload", "waiting", "queued", "running"]):
return True
else:
return None
wait_on(lambda: _retry_on_timeouts(ctx, gi, has_active_jobs), "active jobs", timeout=60 * 60 * 24)
def state_func():
return _retry_on_timeouts(ctx, gi, lambda gi: gi.histories.show_history(history_id))
return _wait_on_state(state_func)
def _wait_for_history(ctx, gi, history_id):
def has_active_jobs(gi):
if has_jobs_in_states(gi, history_id, ["new", "upload", "waiting", "queued", "running"]):
return True
else:
return None
wait_on(lambda: _retry_on_timeouts(ctx, gi, has_active_jobs), "active jobs", timeout=60 * 60 * 24)
def state_func():
return _retry_on_timeouts(ctx, gi, lambda gi: gi.histories.show_history(history_id))
return _wait_on_state(state_func)
def wait_for_all_installed(self):
def status_ready(repo):
status = repo["status"]
if status in ["Installing", "New"]:
return None
if status == "Installed":
return True
raise Exception("Error installing repo status is %s" % status)
def ready():
repos = self.tool_shed_client.get_repositories()
ready = all(map(status_ready, repos))
return ready or None
wait_on(ready, "galaxy tool installation", timeout=60 * 60 * 1)
def wait_for_all_installed(self):
def status_ready(repo):
status = repo["status"]
if status in ["Installing", "New"]:
return None
if status == "Installed":
return True
raise Exception("Error installing repo status is %s" % status)
def ready():
repos = self.tool_shed_client.get_repositories()
ready = all(map(status_ready, repos))
return ready or None
wait_on(ready, "galaxy tool installation", timeout=60 * 60 * 1)
def _wait_on_state(state_func):
def get_state():
response = state_func()
state = response["state"]
if str(state) not in ["running", "queued", "new", "ready"]:
return state
else:
return None
final_state = wait_on(get_state, "state", timeout=100)
return final_state
def _wait_on_state(state_func):
def get_state():
response = state_func()
state = response["state"]
if str(state) not in ["running", "queued", "new", "ready"]:
return state
else:
return None
final_state = wait_on(get_state, "state", timeout=100)
return final_state
def _wait_on_state(state_func, polling_backoff=0):
def get_state():
response = state_func()
state = response["state"]
if str(state) not in ["running", "queued", "new", "ready"]:
return state
else:
return None
timeout = 60 * 60 * 24
final_state = wait_on(get_state, "state", timeout, polling_backoff)
return final_state
