def food_test(tab_name, filt_path_range, filt_frac_good):
database_name = 'control_experiments_Test_Food.db'
db_path = os.path.join(DATABASE_DIR, database_name)
db_obj = plot_db(db_path, filt_path_range, filt_frac_good, tab_name)
db_obj.plot(['length', 'Strain', 'Picker'])
db_obj.plot(['midbody_speed_pos', 'Strain', 'Food_Conc'], [])
db_obj.plot(['midbody_speed_pos', 'Strain', 'Food_Conc'], [0, 500])
return db_obj
def agar_test(tab_name, filt_path_range, filt_frac_good):
database_name = 'control_experiments_Agar_Test.db'
db_path = os.path.join(DATABASE_DIR, database_name)
db_obj = plot_db(db_path, filt_path_range, filt_frac_good, tab_name)
#% Agar_Screening_181116 seems to be wrongly labeled
db_obj.plot(['midbody_speed_pos', 'Strain', 'Old/New Agar', 'exp_name'],
[])
db_obj.plot(['length', 'Strain', 'Old/New Agar', 'exp_name'], [])
return db_obj
def first_test(tab_name, filt_path_range, filt_frac_good):
database_name = 'control_experiments_Test_20161027.db'
db_path = os.path.join(DATABASE_DIR, database_name)
db_obj = plot_db(db_path, filt_path_range, filt_frac_good, tab_name)
db_obj.plot(['length', 'Strain', 'Picker'])
db_obj.plot(['midbody_speed_pos', 'Strain', 'Picker'])
db_obj.plot(['midbody_speed_pos', 'N_Worms', 'Picker'])
return db_obj
def old_single_worm():
database_name = 'control_single.db'
db_path = os.path.join(DATABASE_DIR, database_name)
db_obj = plot_db(db_path,
filt_path_range,
filt_frac_good,
tab_name='features_means')
#select worms that are none
chg = (db_obj.feats['gene'] != db_obj.feats['gene'])
db_obj.feats.loc[chg, 'gene'] = 'N2'
db_obj.feats = db_obj.feats.sort_values(by='gene', ascending=False)
db_obj.feats = db_obj.feats.rename(columns={'gene': 'Strain'})
db_obj.plot(['length', 'Strain'])
db_obj.plot(['midbody_speed_pos', 'Strain'])
return db_obj
if __name__ == '__main__':
tab_name = 'features_medians_split'
filt_path_range = 0
filt_frac_good = 0
#%%
first_test(tab_name, filt_path_range, filt_frac_good)
food_test(tab_name, filt_path_range, filt_frac_good)
agar_test(tab_name, filt_path_range, filt_frac_good)
old_single_worm()
#%%
database_name = 'control_experiments_short_movies.db'
db_path = os.path.join(DATABASE_DIR, database_name)
db_obj = plot_db(db_path, filt_path_range, filt_frac_good, tab_name)
valid_rows = ~db_obj.feats['Vortex'].isnull(
) #db_obj.feats['exp_name'] == 'single_picking_011216'
feat_str = ['midbody_speed_pos', 'Strain', 'Vortex', 'exp_name']
db_obj.plot(feat_str, valid_rows=valid_rows)
valid_rows = db_obj.feats['exp_name'].str.contains('double')
valid_rows &= ~db_obj.feats['exp_name'].str.contains('after')
valid_rows &= db_obj.feats['Vortex'] != 1
feat_str = ['midbody_speed_pos', 'Food_Conc', 'Strain', 'exp_name']
db_obj.plot(feat_str, valid_rows=valid_rows)
#%%